| mature miRNA: ATATAGCATCGTGAGCAATCA species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45402101|gb|AV778444.1|AV778444 AV778444 Lotus japonicus Pods (20-30 mm in length) Lotus japonicus cDNA clone MPDL038g02_f 3' ATATAGCATCGTGAGCAATCA EST sequence (targeted fragment marked with yellow): AAATTGAAAAAGAAAATATGGGTTGGGTATGTGAATAGTAAGAAAGATGTGAAAAAAGTGATTTTATTTTAATTGGTACCTATCCAGCCCGTAGAATGAAACATTCAAGTTGACCTAATAGTAAAATAACCAGAAGAAAAGGGAAGTGAGAGAGGTCATTGCACACGATGCTTTATCTGTTTGTCTATGACTTGTATTAGTTGGATTTATTGTGATATTC | |||||||||
gi|45605789|gb|BP049109.1|BP049109 BP049109 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c ATATAGCATCG-TGAGCAATCA EST sequence (targeted fragment marked with yellow): AATGCTGTATTTCCTGAGGACCCCGGTCAGCTGTTAAATGATTCTGGCCTGAAAAGAAAGGGAGGCTCCCAACCCCGGATGGAGATAGGCCCCAAAGACNTTGAGGAGGTAAAGGNGTTGTGTCTTGGTTCACCGTCTTCTTGTACCCCACCACTGTNTGGAGAAATGAAAAATGGAGGCTGAATTATCTGGGCCACCCTGGATATTGGCCGTTCGCGTGGAGTTTTAACCACTTCCTCTTTTAAGAGATATAAGAAAGGAGAGAAATATTTAAGAATGAATATAAACCTCGTGAGCACGTCACCTTCTAAAGTATATGAAAAAGGCTGATTGCTCACCGATGCTATATATGCACTCACTGTATTGTCCCTAATTCTAATTAGGTTGAACTTAAATAAGTTGTGAAAACCTTAATTAATTTGTAATTTTAATTAGTTTTTAAGTAAGCACTTTAATGAGGTGGTGCCATTAT | |||||||||
gi|45629439|gb|BP072730.1|BP072730 BP072730 Lotus corniculatus var. japonicus nodulating root Lotus japonicus cDNA clone GNf072h ATATAGCATCGTGAGCAATCA EST sequence (targeted fragment marked with yellow): TTGAGGAGTAGAGGGTTGTGCTTGGTTCCAGTCTCTTGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCTGGATATGGCGTCGGTGGATTTTAACATTCCTTTTTAGAATAAAGAAGGAAGAAATATTAAGATGATATAACATCGTGAGCAGTCACTCCTCAAGTAATGAAAAGGGCTGATTGCTCACGATGCTATATATGCATCATGTATTGTCCCTAATCTAATTAGGTTGACTTAAATAAGTTGTGAAAACATTAACTAATTTGTAATTTTAATTAGTTTCTAAGTATGCATTTAATGAGGTGGTGCAATTATTCCTCCTTTGGTTCAGAAGGATGATTATTACTGGTAATTAATGTTCTGTTTAAGATCATACTATATCAACTTTAACTGTT | |||||||||
gi|45629127|gb|BP072415.1|BP072415 BP072415 Lotus corniculatus var. japonicus nodulating root Lotus japonicus cDNA clone GNf068e ATATAGCATCGTGAGCAATCA EST sequence (targeted fragment marked with yellow): CAACCACGGATGGAGATAGGCCAAAAGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCAGTCTCTTGTACCCACACTGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCTGGATATGGCGTCGGTGGATTTTAACATTCCCTTTTAGAATAAAGAAGGAAGAAATATTAAGATGATATAACATCGTGAGCAGTCACTCTAAAGTAATGAAAAGGCTGATTGCTCACGATGCTATATATGCATCATGTATTGTCCCTTATCTAATTAGGTTGACTTAAATAAGTTGTGAATACATTCAACTAATTTGTAATTTTAATTAGTTTCTAAGTATGCATTTAATGAGGTG | |||||||||
gi|45397655|gb|AV773977.1|AV773977 AV773977 Lotus japonicus Pods (20-30 mm in length) Lotus japonicus cDNA clone MPD059g08_f 3', ATATAGCATCGTGAGCAATCA EST sequence (targeted fragment marked with yellow): ATATGTACATGGAGAAAGAAATGCTGTATTTCCTGAGGACCCCGGTCAGCTGTTAAATGATTCTGGCCTGAAAAGAAAGGGAGCTCCCAACCCGGATGGAGATAGGCCAAAAGACTTGAGGAGTAGAGGGTTGTGCTTGGTTCCAGTCTCTTGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCTGGATATGGCGTCGGTGGATTTTAACATTCCCTTTTAGAATAAAGAAGGAAGAAATATTAAGATGATATAACATCGTGAGCAGTCACTCTCAAGTAATGAAAAGGCTGATTGCTCACGATGCTATATATGCATCATGTATTGTCCCTAATCTAATTAGGTTGACTTAAATAAGTTGTGAAAACATTAACTTAATTTGTAATTTTAATTAGTTTCTAAGTATGCATTTAATGAGGTGGTGCA | |||||||||
gi|45608003|gb|BP051323.1|BP051323 BP051323 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c ATATAGCATCGTGAGCAATCA EST sequence (targeted fragment marked with yellow): TCCTTTTTAGAATAAAGAAGAGAAGAAATATTAAGATGATATAACATCGTGAGCAGTCACTCTAAAGTAATGAAAAGGCTGATTGCTCACGATGCTATATATGCATCATGTATTGTCCCTAATCTAATTAGGTTGACTTAAATAAGTTGTGAAAACATTAATTAATTTGTAATTTTAATTAGTTTCTAAGTATGCCTTTAATGAGGTGGTGCCATTATTCCTCCTTTGGTTCAGAAGGATGATTATTACTGGTAATTAATGTTCTGTTTAAG | |||||||||