miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GCGTACAAGGAGCCAAGCATG
species: Lotus japonicus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|45625114|gb|BP068371.1|BP068371 BP068371 Lotus corniculatus var. japonicus nodulating root Lotus japonicus cDNA clone GNf014c

GCGTACAAGGAGCCAAGCATG
||.|||||||.| ||.||||
AGCGTGTTCCTTGTTTTGTAC

EST sequence (targeted fragment marked with yellow):
GGTTCCCAGCCACACCACCCGTGCTCAGAAACCAGAACCCTGACCCCACCTTCAAGAGCCTCCACACTTTTGGTTCCTGGCAGCGGCTACCCAATATAGGCATTTCCACAGTGAGATCAGTGAGTGTTGGAATGTAACCAGACTCTGAATCTGCTACATGCAATTCAATAGGTGTCCCAATCTTAGAAGGGTCACGGATTATATCAAGTGGGCATGTTTTGTTCCTTGTGCGACCCAGTGTGAGGCCTCCCTTGTCAGCCCAGACTGGCCAAGCATAGTACCCTACTCCTGGTTCTAGAGGGTTACCTTGCTTATCAACCACTGGTTCTGGTTCTGGTTCAGCTGCTAGAAGTGGCTGAGTGTTGAGGATTAAAAGAGAAAGGAAGAACATGGAAGGATTGAACATGCTAGCTGCAACCTTCAGTTTTACTTTTTTGGGGGCC