miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GCGTATGAGGAGCCAAGCATA
species: Lotus japonicus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|223446322|gb|GO036373.1|GO036373 LJNBY85TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA sequence

GCGTATGAGGAGCCAAGCATA
.||||||||||. |||.||||
TGCATACTCCTTTGTTTGTAT

EST sequence (targeted fragment marked with yellow):
GGAAGCAACGGGAGCAGCTCCATGCGATTTAAAGCAGGCATATGTACATACTTCTCCAAATCAGATTATTAGGCTACATGCGTATCAAGCTGCTTATCCTATGTTTGTTTCCTCATACGTTCAGCAGCAGCTTACTCCTCCTCTTCTTTGTGATGTGCCTGCTGCCCCTGCTTCACCAGTTGTAGACTCTACTCCACTATCTAATTCATCACAAAAATTAAAGCTCACAAAGGGGGCGTCCGAAAGGGAGTAAGAATAAGCCACACCCGCTGCCGGTTGATTTCTTGGAGCCAGTACCGGGGGAAGATGGCGTGACGACTCGTGCCCAAAGAGCGTGGTTGTTGGGTAAGGAATTGGGTTTGAAGCCAAGAGGGTCAGAAGCTTTGATGCTTAGAGGATTAGAGGCGCAGATCCGTCAAAACCATCCTCATCTCCGTTGATATGTCGGCTGCATCAAATTGAGGTAATTTTTATGGGCCATGTGGTGGGGTGTCTTTTTTTAGCCATG