| mature miRNA: GGCAGAGCATGGATGGAGCTA species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|293544753|gb|FS329731.1|FS329731 FS329731 LjFL3 Lotus japonicus cDNA clone LjFL3-035-AA07 5', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GCGCCACGCATCGCATCAAACAACACAAAAGAGAGAGAAACTTACAAACAAACAAACACACAAAACTTGCCTCTCTCTGCACAAGTTAACTAACTAACTCGTGGTGGTGGTGGTAGTGGTGGCGATGAACTATTGTGAGACGAAAAGCGTGGCGGTGGTGAAGAAGCGGAAAGGCGGCAGAGAAGAAACACTCTCACCTTCTTCCAACAAAACCACCACCGCCATGTTGTCGTCTCACCAGGATCGGAATCGGAACAACAGATCACCACCGAAACGCTACCCTCTCTTGTCGTTTTGGGAGCTTCCGGAATACATGAAGGACAACGAGTACATCTTGCGTTATTACAGAGCCAATTGGCCTCTTAAACAAGCTTTCTTCAGCCTCTTTCGTTGGCATAACGAAACCTTAAACGTTTGGACGCATTTGATTGGATTTTTTCTGTTTCTCGGATTGACTCTGGCGAATTTGATGAAGCCTCATGTGGTGGATCTGTTAGACCAAATTACCAGGTCTTTTTCTTCAAGTGCAGACAAAAATGTTTCTGATAACATCAAAGATCTGTTCCTGGGGACAGCATTACTCTTCGATTTAAAACATCAGCTACCTCTGAAAATGGAACTCAAATCCATAGAGATGATCACAGAAAGGTGGCCCTTCTTCATTTTCCTAGCTGGAGCCATGTTCTGCCTCATCTCTAGCAGC | |||||||||
gi|9278377|gb|AU088853.1|AU088853 AU088853 Lotus japonicus flower bud cDNA Lotus japonicus cDNA clone Ljfb-c65, mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): CACGAGGTGGAGCGATTATTGCATCCATGCTCTGCCTTCTGGCTGTAGCAGTGGTGGCTGAAGACCCTTATATCTATTACACATGGAATGTGACCTACGGTACCATTTCACCTCTTGGAATCCCCCAACAGGGTATCCTCATCAATGGTTTGTTCCCAGGACCTGAAATCAACTCCACCAAGCAACAACAACATTGTCATCAACGTGTTCAACAACCTTGACAANCCATTTGTTGTTCACATGGAANCGGGTTCCAGCAAAAGAAAAAACTCNTGGCAAAATGGTANTTTNGGNAACTCCANTGCCCCCATCCCNANCCCANGNAACCCACTTNCCCCTTCCAATTTCCNNGGTTTNAAGGGAACNNAATTCGGTAANCTTATTTCTNTNAACCCCCTAAACCGGGCCNCCCAAAAAAACCCCCCGGGTNNNAATCCNGGTGGTTTTNAAAAATCNNCCCCCNNTTTNTTTAATCCCTTTTNCCCTTTTNCTNANCCCCTCTAANAAAAAATTGGGNTCCCCCTNGGTTNANGGGTTTNCCCAANCCCCCCANCTCCT | |||||||||
gi|223430087|gb|GO023610.1|GO023610 LJMCE77TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): TTTTTCCTCTGTACCAGAAATTTATCCTTAATGATGTCCCTCCTTTAATAACTATATCCATGCTCTGCCTTTCATGGCCATTCTTTTATCCAACCTTGCCATTTCCAATCCTAAACCCTTCTTCTCCATCACCTCAAAACCCATAACTTGTGCCACCAACCTCACTTCCAAACGCAACCTCCTTCTCCAAACTTCTCTGCTCTGCGTTACCATTGGTCTCAGTCCTCAACTCCCAGCTGCCTTATCTTCACCTCAAAATCCACCGTCCAAATCGCTTCTCTCTAGCATTGAAAACACCAAGTCTGGTACCAGTTCTCCGGTGATGGCTTTGCTATTCGAGTCCCACCAGAGTTTGAAGATATCACAGAACCTGAAGATTTGAATGCTGGACTGACTCTTTATGGGGACAGGGCAAAGACACCGCCTTTTGCGGCACAGTTTGCATCTTCCGATAGGAATGAGGTTCTGAGTGTGGTTACTAAGCCAACTAATCAACTTAAAATCACCTTCTTAGAGGCTAAGGATATAACTGATTTAGGCTCCTTGAGGGAAGCAGCAAAAA | |||||||||
gi|293545575|gb|FS339824.1|FS339824 FS339824 LjFL3 Lotus japonicus cDNA clone LjFL3-066-AH05 5', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GACATTTCCCCCTACCTACTTCCAAACCCACATGAGTGATACCACCATGACTGCTGCTACTACAGACCAGTGGATGCAGATGCAGATGCAGATGCAATTCTATCAGCAGCAACCTCACATGAATGGCTCTGTTCATGCTCTACCTCCACCAAACTCCACTCCCACCATCCCATCAGAAAACACCATCTTGAGCCCAACCAATTCACTGTCTCCAAAGGGGAGTTTATCCAAACCAATAAGAAGGAGGTCTAGATCTTCTAAGAAAACCCCAACCACACTCCTCAATGCCAACACCACCAATTTTAGGGCACTAGTGCAGCAATTTACAGGGTGCCCTAGCACCACAACCATGCCATCACCATCACTCTATAAAGGGCCTATTACCTTAAACTTCCAACAAGGCAGCAGACACCAGATTCAACACAACACAGAAACTAGGATAATGCAACCTTCAAGCACAAGAAACAACAACCAGATTTATCATCAACTGCAAGAGCAGCAGAGTGGTTACTCAAGGCCTAGCACTACTACTAGGATGGATGATGTCTCTGGTGGCTTGCTAGTGGATCATGATTTTAGTTTGCATGATCTAACTGTGAATTCGTTCTCCAATGATGATTTTTAAGAATGGACTATGTTTAGCTATGTTTCATGGGATGAAAATGTTTGATCATGAAGGAATCAGTGATTGAATCCTGTTTATATTAGATGGTGGAATTTCCTTAGGTATATTTGGTTCTTAGTTGTATCATGTATGGATGCTATTATAAGACAATAATTCATAAGGTTTTTCATGTAATGCTTTAATTTCTGTAAATTCAATTTACCTGCTTTCTCTCCTTTTTT | |||||||||
gi|293528749|gb|FS347492.1|FS347492 FS347492 LjFL3 Lotus japonicus cDNA clone LjFL3-008-BD07.r0 3', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GAAGGAATCAGCTCCTCATCTTGAAGTTCTCGAGATGAGTGGAAATGAAATTTCAGTTGAGGCTGCTCCTGCAATAGCAGCCTTCATAGCAGGAAAACAGTGTCTTGCCAAGTTGAACTTCTCTGAGAATGAACTCAAGGATGAAGGTGCCATCAAAATAAGTAAGGCACTGGAAGGCCTTGTCCAGTTAAAGGAAATTGATCTGAGTAGCAACCAAATAACTGGGGCTGGGGCCCGAGAATTGGCTCTGACTGTGGTGCAGAAGGCTGATTTCAAATCTCTGAACATCAATGGAAACTTCATTTCCAATGAAGGCATTGATGAGTTGACGGATATATTAAAAAATTCTCCTGACGTTCTTGGTCCATTAAATGACAATGATCCTGATGGAGAAGACAATGATGAAGAATCTGATGAAGAAGACGGTGAGGATGAACTGGAATCCAAAATGAAAAGCCTTTCAGTTGACTGAACTGGCGCATTTGTTATCTCCTTTCATGTTCTGCTGCTGAAATAACTCTTACGACGGTAGCTAGATCATTTTATTCCATGTTGTTTATGTAGGCATCAGTTACAGACAGCAGTTAATCTTGTTTTCAATGTTTCATTTCTCTTCGTAGCACGAGAACGAGAATGTATTATTTGCAGTTGCAACACTGTAGTCTATAGTCTTATTGTTTTTCAAACATGGTTCTGCTTGTAGAAGTTTTCTTTGGGGTACAATTAGTACTGAGATTTGAAGTTATTCTTTTTTCTGGTCAAAAAAAAAAAAAAAA | |||||||||
gi|293536088|gb|FS316420.1|FS316420 FS316420 LjFL2 Lotus japonicus cDNA clone LjFL2-036-AA09 5', mRNA sequence GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GCCTACTGGATAACTACATCTCCAATCTCTCAACAACAACTAGCCACGCATCGCATCAAACAACACAAAAGAGAGAGAAACTTACAAACAAACAAACACACAAAACTTGCCTCTCTCTGCACAAGTTAACTAACTAACTCGTGGTGGTGGTGGTAGTGGTGGCGATGAACTATTGTGAGACGAAAAGCGTGGCGGTGGTGAAGAAGCGGAAAGGCGGCAGAGAAGAAACACTCTCACCTTCTTCCAACAAAACCACCACCGCCATGTTGTCGTCTCACCAGGATCGGAATCGGAACAACAGATCACCACCGAAACGCTACCCTCTCTTGTCGTTTTGGGAGCTTCCGGAATACATGAAGGACAACGAGTACATCTTGCGTTATTACAGAGCCAATTGGCCTCTTAAACAAGCTTTCTTCAGCCTCTTTCGTTGGCATAACGAAACCTTAAACGTTTGGACGCATTTGATTGGATTTTTTCTGTTTCTCGGATTGACTCTGGCGAATTTGATGAAGCCTCATGTGGTGGATCCGTTAGACCAAATTACCAGGTCTTTTTCTTCAAGTGCAGACAAAAATGTTTCTGATAACATCAAAGATCTGTTCCTGGGGACAGCATTACTCTTCGATTTAAAACATCAGCTACCTCTGAAAATGGAACTCAAATCCATAGAGATGATCACAGAAAGGTGGCCCTTCTTCATTTTCCTAGCTGGAGCCATGTTCTGCCTCATCTCTAGCAGCATTTGCCACCTCTTCTCTTGTCACTCCCACGAC | |||||||||
gi|93664055|gb|BW599365.1|BW599365 BW599365 Lotus japonicus suspension-cultured cells Lotus japonicus cDNA clone LjCa-017-DG04 5 GGCAGAGCATGGATGGAGCTA EST sequence (targeted fragment marked with yellow): GCATTGACAAGACAATGGCAGGAAAGAGGCAGAGCATGGATGGAGCTATCAACAAAATAAATTGAGAATGGGAGATGTTTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGCCACGTCTCAGTCTCCATTTCTCATGAGAGCATGTTAGGATACACAGTAGAAAAAATACGGTAAGCTAAAATTACAGTGGATAGAAGCAAATCGCCTTAGTTTTTATGGTTGTCTGATTTCGGTTTCACCATCCGTGTACTCAAACATGGTTGTCTTATTTCTTCAACTTATGTTTTATACAGCAATTTGTAGATTGAACATCTTATTTCTTAATTCCATATTTGATTCAATGCAACCAAACTAGTAAGGAGAGTTTATTTGGTTGAATTTTAAGGTCATAAGGATTCTCATACATGCATTCTATTCAGGACATGATGCCGGGCTTGCCACACTTCAATAAGCAGTTCAGAACCACATCAACTGG | |||||||||