| mature miRNA: GTATAACATCATGAGCAATCA species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45637515|gb|BP080854.1|BP080854 BP080854 Lotus japonicus roots Lotus japonicus cDNA clone MR063f09_f 3', mRNA sequence GTATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): AGGGTTGTGTCTGGTTCCAGTTTCATGCACACTCCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCTTTTGGAGGGGAATTTCGTTAATTAGATCTGGTTTTAGCCTATTAACTGATGCAGCATATATACATATATCTATCTAGCTATATATATGTGGGCAGCATTTAGAGAGAAAATTGATGGAAATTGTATAACATCATGAGCAGTCAATCTGCAACAAGATCCAAGGCTGATTGCTCATGATGCTATATATGCACACCATTCCTCATGAATAATTTGTGTGTTGCTCGCTGCAGTCAACTATACATTTGCAAACCCTTGTTAATTAGCAGTCTTCAATTTATGCAAATCAAGCTTTTACTT | |||||||||
gi|45402074|gb|AV778417.1|AV778417 AV778417 Lotus japonicus Pods (20-30 mm in length) Lotus japonicus cDNA clone MPDL038c07_f 3' GTATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TCCAAGCTCTTTATTTTTTTATTCAAGAGTTTTGCAGGTACTCTTTTTAACTACACTTTGTCTGTATTCAACCTGATCACCTATTCTTCAAACGCTCCAACCATATCAGATGATTCTGTTGCTTTGCACTAGTTTTTCTCATTGTATGCTGGCTTGGTTTACTAACAGCCATTATTGCAGATGATGTTGTACTAGTGCTGTCTTTGGGGAATGAAGGCACCCAGCATGCTGAGAGCTTCTAGTCCTTTCAGAATCTTGAATCAGTTCGGCTCTTCCACAGAAGCAGGAAGTAATATCTGCCTGCCACAGATATTAATGTTTATATTACAATTACACATAACCACTCTTGATTTTATGCAGAGGCTATGTACTGAAAGTCCCTATTAAACCTTTGGAAGAGCACTGAAGGCAATATGGGAATTACGTTTAAAAGATGTATGAATTTGGAGAGCTTACTGTGCACCCAACCATCACTTCTTTTAATAATTGGTCCCCTTCCTATTTGATATGAAATGAATTATTTCATATTTTTTCAGTT | |||||||||
gi|179637200|gb|DC597421.1|DC597421 DC597421 Lotus japonicus pod (20-30 mm in length) Lotus japonicus cDNA clone MPD089a10_r 5', GTATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGTAGCCTTATTTCTGAAATTATCATTGATCATGATGTTGTACAAAAAGGAATTGGTTATTCTCCTCAGGAGGTCACTGCAGCTCTTTCTTCTACTGACATGAAAACAGTCCAAAACATGAAGGAGACAATGCGTAAATTCCAAGCTTTTTTGGCAAACTTTGAGGTAATAAAAATATTTCTTCTACTGCAAGTCAAATGCAGTTGTTAACTATGAGTGGTTGGCAACAAATTAATAGTTGTTTCATCATTCTTTTAGTTTACATCTTGTTTTTTTTTCTCTCTCTAGGGAATAATTCGAGTAGAATTCAATAGGAAATCTCCCATTCCACTTGCCCTAGAGATGAATCAAGGCTGTCCTCAATCTGATGCATGGTTACTCATGAGAAGGCTGAAGTCTCTTGACCCTGCACAAGTTCAAAATCATTCTCCTTTGGATCCAATTTATTTATCCCCGTAATTATCAGTTACCTGAACGGCTAAAATTTCATAATTTGGCTTAACAGAGTTGGGCTCANAATTGCTACACCAACCAAACATAATTGAATGTCAGTATCTATTGCAGCCGTTGTATATT | |||||||||
gi|45628438|gb|BP071722.1|BP071722 BP071722 Lotus corniculatus var. japonicus nodulating root Lotus japonicus cDNA clone GNf059a GTATAACATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GTTGGGAGTGACAATGGAGCAGACTATTGGGCTCCTGCCTTTGGAGGGGGCTTTCAGTAAATCAACTTAACGATTGGGGGCAGCAGCATATACATACAAATATGGTGGCATATTGTGCGTGCAGAAGGTAAATTCAAGGAAATGATATAACATCATGAGCAGTCCATCTGCCTAAAAAAATTAAGGCTGATTGCTCATGATGTTATACTTCATTATTCCTGAATAAATTGTATGCAAGCCAGCCATGATGATAAGTATAAGATGGTGGTGTCAATATTGCGCTATATTTCAATGTATATGCAATATCTGTATCATTAATTATCATTTGAATGCTACATTTTTAGCAGCATTAACCAATATTATTTGTATTATTGCTAGTACTTTTTTT | |||||||||