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mature miRNA: TCGCTTGGTGCAGGTCGGGAA
species: Lotus japonicus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|293561432|gb|FS341041.1|FS341041 FS341041 LjFL3 Lotus japonicus cDNA clone LjFL3-069-DD02 5', mRNA sequence

TCGCTTGGTGCAGGTCGGGAA
| ||||||||||| ||||||
AACGAACCACGTCGAGCCCTC

EST sequence (targeted fragment marked with yellow):
TTTTCACTCCAAACCAAACACTATTCATTGCTCTTTTTCTCTTCATCTCTCTCACTTCGCTCTCTCTGCTACTCAGAGCAAAATCAACCTTGCTCTTCTCCTTTTCTTCTCGTCTCTGCTCTTCTTCTAGGGTTCATCATGGTTAGGAAGAGGAGAACTGATGGACCTAGTGGGGGTGAAGGTTCTGAGGGCCAACACTCTCATTCTACTGAGAGGAGTGCTCCGCCTCCCCAACAGGCTGCTGCTGCACCGGGAGGAGGAGGACCGGGACCCCAAGGGGGTAGAGGTTATGGTGGTCCACCACAAGGTGGACGTGGCGGCGGCTATGGTGGTGGTGGTGGGCCGGGTTATGGTGGTGGGGGGCGCGGTGGCCATGGGGTGCCACAACAGCAGTATGGCGGCCCTCCTGAGTATCAAGGTAGGGGGAGGGGAGGCCCTTCTCAGCAAGGAGGGCGCGGTGGATATAGTGGTGGCGGCGGAGGATATGGTGGTGGCGGAGGCCGGGGAGGTGGTGGTATGGGCAGTGGCCGTGGCGTAAGTCCCTCACATGGTGGCCCACCATCTAGGCCACCAGCTCCCGAGCTGCACCAAGCAACCCCAGTTCCATATCAAGCTGGGGTGACTCCTCAGCCTCCACCATATGAGGCGAGTTCATCATCATCTCAGCCTGACGTGTCTGAAGTTGAGAAGCAGATGTCCCAG