| mature miRNA: TGAGCCAAGGATGACTTGTCG species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|223421750|gb|GO015062.1|GO015062 LJGAL50TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence TGAGCCAAGGATGACTTGTCG EST sequence (targeted fragment marked with yellow): TTTCGGGACGTATAATGCTGCCACTTAACATGACAACCGATGAAGGACCAATTTACGTTAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCTCGTGCCAAAGCTGTGCTTGATCGCAAAATGACTAAACGTCGTAAGCCCTATTTGCATGAGTCCCGCCATCTCCATGCACTGCGACGACCAAGAGGATGTGGTGGTCGTTTCTTGAACACAAAGGTTTCTGCTAATGGAAATGGCAAAACTGGAAGGGACGTGAAGAAAACTGGTGGTGAACAGCTACAGTCCAGTGGTTCTCAGGGTTCTGATGTCTTTCAATCTGAGGTTGGAACTTTAAACTCTTCGAAAGAGACTAATGGGAGCAGTCCAAATGTTTCTGGTTTAGAGGTGACTAGCATGTATTCAAGGGGAGGTTTTGACACCTTTTCTTTCAACCATCTTGGATCTTCTGTCTACCCTCTGGCAGACATGGTCGATTGTGGGCGTGGCATCATGCCCACAAAATGGGTTGCAGCGGGAGGTAACAGCTGCAACCTTAACACTTGATCGGCAAAGAATCAAGTGCAGGCTTGGCGCAATGTTGTACCAAACCCTGTCCTTGATGAGGCCAGATAGCAGTGGGCTTGTCTCCGCATCTGGTCTTAAGGCAATCCATCCTTGGCTCATTCTTTGGCAGTTCATCCTTGGCTCATTGTACTATAGGTATCATCTGTCTTACTGTTCAGGAATGTCTCAGTATGATATCCTGATACAGAAGGCAATTGTGTGTCTGTCTTTGTGTGAAAATAAAAAAGCACAGACATTCTAGTTATGTGTGCTTTCATTAACGCCTGAATCTGGTGTTTTGTTC | |||||||||
gi|223421750|gb|GO015062.1|GO015062 LJGAL50TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA sequence TGAGCCAAGGATGACTTGTCG EST sequence (targeted fragment marked with yellow): TTTCGGGACGTATAATGCTGCCACTTAACATGACAACCGATGAAGGACCAATTTACGTTAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCTCGTGCCAAAGCTGTGCTTGATCGCAAAATGACTAAACGTCGTAAGCCCTATTTGCATGAGTCCCGCCATCTCCATGCACTGCGACGACCAAGAGGATGTGGTGGTCGTTTCTTGAACACAAAGGTTTCTGCTAATGGAAATGGCAAAACTGGAAGGGACGTGAAGAAAACTGGTGGTGAACAGCTACAGTCCAGTGGTTCTCAGGGTTCTGATGTCTTTCAATCTGAGGTTGGAACTTTAAACTCTTCGAAAGAGACTAATGGGAGCAGTCCAAATGTTTCTGGTTTAGAGGTGACTAGCATGTATTCAAGGGGAGGTTTTGACACCTTTTCTTTCAACCATCTTGGATCTTCTGTCTACCCTCTGGCAGACATGGTCGATTGTGGGCGTGGCATCATGCCCACAAAATGGGTTGCAGCGGGAGGTAACAGCTGCAACCTTAACACTTGATCGGCAAAGAATCAAGTGCAGGCTTGGCGCAATGTTGTACCAAACCCTGTCCTTGATGAGGCCAGATAGCAGTGGGCTTGTCTCCGCATCTGGTCTTAAGGCAATCCATCCTTGGCTCATTCTTTGGCAGTTCATCCTTGGCTCATTGTACTATAGGTATCATCTGTCTTACTGTTCAGGAATGTCTCAGTATGATATCCTGATACAGAAGGCAATTGTGTGTCTGTCTTTGTGTGAAAATAAAAAAGCACAGACATTCTAGTTATGTGTGCTTTCATTAACGCCTGAATCTGGTGTTTTGTTC | |||||||||
gi|293517531|gb|FS352315.1|FS352315 FS352315 LjFL3 Lotus japonicus cDNA clone LjFL3-023-BG06.r0 3', mRNA sequence TGAGCCAAGGATGACTTGTCG EST sequence (targeted fragment marked with yellow): ACATGCAATGAAAAGAGCTAGAGGTTCTGGCGGACGTTTCCTGAACACAAAAAAGCTCCAAGAGTCAAAGCTCACTTCAAAGAACCATGGCTTTGGTGCGTCCAATTGTACTCAGTTGAATCTGAGCGGAAACATGTCAGAATCTGAGGTCGGTCGAGTGGAAAACTACGGAGATGGTGTTTCCGCAACCACCTGTTCTGATGTTACAAGTGGATCTAACAGTGACTGCATCCTCAAGCAACAGGAATTAGAGTTCAGACTGTGTGGTTACCCTTCTCATATTGGAAGAAATATGCAGGGTTACGCGGCAAACATGGGTAGTGGTGGTGGTGGGAATCCACACCATCTATCAGTTCTTCTCTGAAAAAGTGGCACATTGTAGCTAGTTATTCCTCTGCATTCAGTTGGAGAAGGTAACTGCTTGTGTTCCATTGGGAAGTCATCCTTGGCTCATTTATATTATGTCTTACTAGTTTGTTTTCATGTTAATTGTTCAAGAACAAGGATAGGAACCTTTGCCAGATATTATGTTTTGTTAATTGTCCAAGAATAAGGATAGGGACCTTTGCTATATATTATGTATTATGTATTACTACTCTGAAAATGTTTGGTCAAAGAAGAACATTGCAAAAAAAAAAAAAAAAATGA | |||||||||
gi|293535013|gb|FS315966.1|FS315966 FS315966 LjFL2 Lotus japonicus cDNA clone LjFL2-034-CG05 5', mRNA sequence TGAGCCAAGGATGACTTGTCG EST sequence (targeted fragment marked with yellow): TACTGGGCTGAATCTTTACACTATTCAACACAGAGATCGAAGATGGATAGGCTTCTACTACAATCCCCTTCTCTCAACACCGCTATTCGCCGCAAACCCTTCACTCCGACCACCACTCGTTCTCATTCCACCGCTAGATTCAAATCATCTTCTTCCCCTTTCAGTTTCAGGATGATTTGCAAGCATCAAAACCCATCTCCATTTTCCTCTTCCACCACTCCCTGCTTCGCCTCATCGGTTCCACTCGAAGATTCTTCTGATGCCCACATACCCAAATCCCAACCCCTCAATCAGATCACTGATGGGGACTCGAAAAACCCAAAGGCAATAACAGCTCGGACATTTGTATTACTCTCTGCTCTTGTTATGCTTTTAATTCAACCAGCTTTTGCACCAGCAGCTTTTGCAACCTTCCAAAATGCGGCCAAGACCGGTGGTCCTGCACTAATCCGCAATGAGCTTGTAAGTAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTGCACACGCTATCGGGGCCTGACCACCTTGCAGCTTTGGCTCCATTGTCAATTGGCCGTACCCGGATGGAGAGTGCTGCTGTTGGAGCCCTTTGGGGTTGCGGCCATGATGCTGGACAGGTTATCTTTGGCTTAATATTTTTGCTCCTGAAAGAT | |||||||||
gi|293533962|gb|FS317161.1|FS317161 FS317161 LjFL2 Lotus japonicus cDNA clone LjFL2-038-AB12 5', mRNA sequence TGAGCCAAGGATGACTTGTCG EST sequence (targeted fragment marked with yellow): TACTGGTCCTTCCCATGACTAGTTCTTGAGACAACAACACTTTATCCAAATCCCACTGTTTCTCTTCTCCGCCGCTGAATCTTTACACTATTCAACACAGAGATCGAAGATGGATAGGCTTCTACTACAATCCCCTTCTCACAACACCGCTATTCGCCGCAAACCCTTCACTCCGACCACCACTCGTTCTCATTCCACCGCTAGATTCAAATCATCTTCTTCCCCTTTCAGTTTCAGGATGATTTGCAAGCATCAAAACCCATCTCCATTTTCCTCTTCCACCACTCCCTGCTTCGCCTCATCGGTTCCACTCGAAGATTCTTCTGATGCCCACATACCCAAATCCCAACCCCTCAATCAGATCACTGATGGGGACTCGAAAAACCCAAAGGCAATAACAGCTCGGACATTTGTATTACTCTCTGCTCTTGTTATGCTTTTAATTCAACCAGCTTTTGCACCAGCAGCTTTTGCAACCTTCCAAAATGCGGCCAAGACCGGTGGTCCTGCACTAATCCGCAATGAGCTTGTAAGTAGTGCTTGGACTGGTTTCTTTGCTGGTTGCTTGCACACGCTATCGGGGCCTGACCACCTTGCAGCTTTGGCTCCATTGTCAATTGGCCGTACCCGGATGGAGAGTGCTGCTGTTGGAGCCCTTTGGGGTTGCGGCCATGATGCTGGACAGGTTATCTTTGGCTTAATATTTTTGCTCCTGAAAGATCGACTTCACATTGAAATTATTCAAACTTGGGGCACTCGA | |||||||||