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mature miRNA: TGCCTGGCTCCCTGTATGCCA
species: Lotus japonicus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|179637802|gb|DC595011.1|DC595011 DC595011 Lotus japonicus nodulating root har1-3 Lotus japonicus cDNA clone GNr030d08 5', mRN 

TGCCTGGCTCCCTGTATGCCA
||| ||||||| ||||.||||
ACGAACCGAGGAACATGCGGT

EST sequence (targeted fragment marked with yellow):
AGTGTCCCTAGAGTCACAATAGCTAGCTCTCCTTATTACCCTGCACCTTCATCCCCTTCTAATAATCTCTCCAAAGTCATGATCCTATCCTTGAGGGAGTTTGAAAAAGATCACTTCATGTGGAAGCAAGCATCACAGATTCACATATGATGAATGAAGATCTATTGGTTAGCTCTACTAATCTTACTACCATCTTCTGTGTTGTGGTTATTGGTCAAGGAAGTAGCAATAATGAGTAATTATTTACTCATTTTTGGTATTTTGTTATTTGTTTATTAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCACATCACCACGGTGATGGCCTAATGAATGGCGTACAAGGAGCCAAGCATGCTGTGTGTTGCTATTTAGCTTCTACAAATTTCTTATTGAATGTTCTCTTAATTCAGTTTTAATCTTCTTTTGATCTTTTTGCTTGTTTCTACTTGCCTTTTGTTAGCTGAAATTGTGGAGCATGCAGTGTTGTTAAAGCTGTCCGAATCTCCTTGCTTTTGATGTCTATTTAGTTGTTTATTAAT


gi|293564297|gb|FS344717.1|FS344717 FS344717 LjFL3 Lotus japonicus cDNA clone LjFL3-081-AB06 5', mRNA sequence 

TGCCTGGCTCCCTGTATGCCA
||| ||||||| ..||.||||
ACGAACCGAGGAGTATGCGGT

EST sequence (targeted fragment marked with yellow):
GAGGGTGCAATTCCAACCCCACATCTTCCTCCTTTCTCTCTGAAAACAAACCCTATTATTAGCCACACCTTAACTCGTCCTCTATGTGTTAGCCCACTGCTTTGCTTGTTTTATGCCAATTTTTCAGTTTGTGGGGCTCTCTCAAACCCCATTTATTTGATTATGACCTAGTTCTATTCTATAGATCTCCCTTCATCCTCACTATATACCTCCTCTCCTTCCCTCCCCCTTCACTCTTACTCTCTAGTACTACTCACTTTCTCTCCTTCATTCTCTTCCTCTCTCTTTTTTGTCCCTTACTCACTTCTTTCTTTCCCTACCACCAATTCCACCTTCATCTTCATACAACAATTATCATCTAGGTTTGATCACTTACATATATAGAAAGAATTTTTCTCACCACAAATCATGTGCATTACATTTATGTAGCCAAAGCTAGCTCTTTTGTTTTCACACACATATACACACACAAATTCTATAGCCTTTGGATGTGGGGAGAGATTTGTGGAGGCTAATTAGGAATTTGGAAGAGAAAATATTCATTTGATCTGAATATTTTTCTTCCTTTTTTAAATTTTGTTGCTATTCTAATTGTATTTAATTTATAGTCATATGTCATCATGCATACATATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGGAGAGCTCATCGAAACATCAATGATCTCTTTGGATGGCGTATGAGGAGCCAAGCATATTCCATGTTTCATACATGGAGATGATCATGATCAAATTTAATTATCTACTTATGTTGAATGATCTAAATTGA


gi|45626702|gb|BP069972.1|BP069972 BP069972 Lotus corniculatus var. japonicus nodulating root Lotus japonicus cDNA clone GNf036c 

TGCCTGGCTCCCTGTATGCCA
||||||||||| |||||. |
ACGGACCGAGGAACATATTGA

EST sequence (targeted fragment marked with yellow):
CTATTTGAATGGATCTCAAATCCTCAAGAGTGCCTCCAGGGAGTGTGAAGGGGTTTTCAATTCAAGGTTGTGCTATGTATTTTGGCAGTTTTCTAGTTTATTCGGTGGCTGCTGAGAGTTATACAAGGAGCCAGGCAATTAAGTCACATCTTTTTTGGGTATTAGTATCTTATTTACTGGTCTTTAGTAGCTTTGGGGTGCTAGCTTTCTATACTTCTGTGATGCTAGCATTAAGCTAGGACCTTAGTTTTTCATTTGTTGTTTCTAGTCTCTTTTAGAGGACAGTCTTTACCTCTTTTATTAGTCTCTTTTTCCTCTCTTTGTATTTTGGGTTGGGCACCCTTGTGCTCCCTTAATATATTTCTTTGGCTTAT


gi|29968647|gb|CB828581.1|CB828581 LjNEST88b9r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA seq 

TGCCTGGCTCCCTGTATGCCA
|||||||||||||||||||
ACGGACCGAGGGACATACGAA

EST sequence (targeted fragment marked with yellow):
GTGGTTGGTTGAATTGGTATCGAACATGCCAGCCATCCATTTCACACCCTTCTCTCCACCGAGAAAGAAGCTGCGGTTTCCGCAGCACCCCGACTTCCCCCTTGATGTTCGTTTTCCGACACCAACGTTTTCAGGCAACCAGCTCGGGCCAAACGTGCCCTTGATCTGTTTATCTGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTATCAGATATCCACCTTAGCAATAAACTACAGTTGGGGTTGTTTCCAACTAACATCCAGCTTCATAGTGGGATTTCAAATGGCAACATGACCAACCATGATGAGAGCAAGGAAAGCTTATCATGCTTGCTGACCATGGGAAAATCTATTAAAAGTTTGGAGAAATCTGTTGATGTTAAGAAACACCAATTTTTGCTTTTCGGTCAACCGATACTCACTGAGCAACAAATCTCTAATAGCTGCTCTAGAGAAGTGTTGTCTCATAATAATTCAGGAAAAAATTCACTAGCTGTGAATGAGGACAAAGA