| mature miRNA: TTACTCCCTCCGTTCCAATTT species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45402244|gb|AV778587.1|AV778587 AV778587 Lotus japonicus Pods (20-30 mm in length) Lotus japonicus cDNA clone MPDL041f01_f 3' TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): CTCAATGCTGGTCTTGGAATTGTTTTATACTCCCTCCGCTCCTATTTATAAGCAACCAACACAAAATTCACATACTTTAAGAAATGTAGTTAAAGTAGATAAAATGCATTAAATTTGTCTTAAATCAAAATAAACTTCCAAAATTACCCTTTGCCTATTAGTGTTGGAAAGTGGGAAAGAGAGAGAATAATTAATGAAACACATTCTACCAGTTAGAATTAATAAGGGCATCATTGGCAAAAATTAATTAATATAGCTCAAACTCTCATTTGGTTCTTATAAAAAGGACCATGCTTCTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATTGGGTTGGCTTGTTTCAATTCCTCACTTGAGGGAGTTGTCCACTAATAACATGCACGTATGATTGCTTTATTATGATGTAACGTTGTGTGAGTAACTATTATAGGCAACAC | |||||||||
gi|223430397|gb|GO024100.1|GO024100 LJMCN26TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): GGAAAACACTATTGTGCAAGTACTTCAAACGCAGACACAGAGACAGACAGCGAAATGGCTTGCAGACAATTGTGGGCTTCAAGAGCTGCGTCGTACCTGAGGATCTCTGTCTTCAACAGAGCCTTCTCCAGTGTTGTTAAAGATTTGAAGTATGCCGATTCTCATGAGTGGGTGAAAGTTGATGGAAATTCTGCAACTGTTGGCATAACTGATCATGCCCAAGATCATTTGGGTGATGTTGTGTATGTTGAATTGCCAGAAGTGGGGACAGAAGTAACACAAGGAGGTGGTTTTGGCGCAGTTGAAAGTGTGAAGGCAACTAGCGATATCAACTCTCCTGTTTCAGGAAAAGTGGTTGAAGTTAATGAGGAGCTTAACAGCTCTCCCGCTAAGGTCAACTCAAGCCCTTATAGAGATGGATGGATAATTAAAGTAGAATTGAGTGACAGCAGTGAACTAAGCAACTTGACGGATTCAGAACAATACTCCAAATTCTGTGAAGAAGAAGATTCCAAGCATTGATAGGTTCGCCAGTATCTTTTAGCTCTCTCCATGAGTAGATGATGTCAAATTGGAAGTACTTCTAAAAAGGGACGGAGGGAGTATTATAAAGGTGGAACATACCAAGACATAAAACGCGGTACACTTTGGTTTCGTTGTAAATGATGGAACGAATGAGACATAACATACACTTTCTTATACTT | |||||||||
gi|45401135|gb|AV777471.1|AV777471 AV777471 Lotus japonicus Pods (20-30 mm in length) Lotus japonicus cDNA clone MPDL019f02_f 3' TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): AAGGGAGTAAGCTCTGACTCTGAAGTATGTTACAAGAAAACTATCTGGTAAATCTTTTAAGAAATATTTTGATTCAATTGATCTGTATTTAGACATAAATTTTGATATACTCCCTCCGGTCCTATTTATAAGTAACAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATTTGTCTTAAATTAAAATGAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGAAAAGAAAGAGAATAATTAAAGAGACCCCTTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTCATTTGGTTTTTATAAAAAGGACCAAGATTTTTTTTTTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATATGATATTCTGTATTCATGTAGCTCCTACCAATGGGGAAAAAGCCCTGGTGTATTTGTTAAGAATAATGACTATTCATAAATACCACATGCAATCAATTAGATTGTTGGAAG | |||||||||
gi|27553576|gb|AU251911.1|AU251911 AU251911 Lotus japonicus immature flower bud cDNA Lotus japonicus cDNA clone LjImfb-F94 5', m TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): TAATGCTTTTCCACACTATTCAATACATTAATTAAGGGTAAATGTGGAAGATTGTATAATTTTTTAATTAACGTCATTACATGTTTTCTTAATAAGTGTAATTGGTTTAAGAGGGTCTTATAATTAGGGACGGAGGGAGTAATAATTTACATTTACATTCATCTATTAGTCTACTCTCTGCGTGTTATCTGTCATATCAATTTATCGATCTGCCATATGTTGGAAGACATTATAGGAAGGCAAGAAACTTACTATTTTGTGCACTAAGT | |||||||||
gi|45576259|gb|BP042921.1|BP042921 BP042921 Lotus corniculatus var. japonicus flower bud Lotus japonicus cDNA clone MFBL033e07_f TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): CAGTCCCACTTATTGCGGGAAAGCTGGGAAAGGATATGATGAAGTTTATATATTAGCACCAGTCTAAATGCTGGTCTTGGAATTGTTTTATACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAAGTAGATAAAATGCATTAAATTTGTCTTAAATCAAAATAAACTTCCAAAATTACCCTTTGCTATTAGTGTTGGAAAGTGGGAAAGAGAGAGAATAATTAATGAAACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAATGTTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATTGGGTTGGCTTGTTTCAATTCCTCACTTGAGGGAGTTGTCCACTAATAACATGCATGTATGATTGCTTTATTATGATGTAACGTTGTGTGAGTAACTATTATTAGGC | |||||||||
gi|293520679|gb|FS362371.1|FS362371 FS362371 LjFL3 Lotus japonicus cDNA clone LjFL3-054-CH10.r0 3', mRNA sequence TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): ACCCCTATTTATGATAACACTTTTTCATCATTGTACTACTAATGGTGGTGCTCCACTACCAATAAATGCAAGGGTGAATATGGAAAGAAATATTAACTTTTGCAAGGTTAGCTTATATTTAGTGACACAAAAAAAGTCTCAATGTTAGCTTATAATTAGGGACGGAGGGAGTATTTCACTTTATCTATCTTTTCCACTTATATGTATATTGACCTTCTGTTTGATTGAAGTTCATAAATTGACATAATGAGCTGCTATAGTAATCTGATCCTATATTGTTTTTAACTGACAACTTTGGCTTTACAGTTATGATATCCAATGCGGCACTTATGACCCATATGAAGATAGTATTTCTGCAATGAGGCTGTATAAGAGAATGCGAGGTCAAAATCATCAGGGGAAAAACTGCGGAACATTGACTCCAAATAACAACTTTGTCGGCAAGTTTGATGGTTGGATATCTAAGGAACTTGACAACCTCACACCAGATGAACTCTTTGACATGTCAAAATCAGACTACAAGTGTTGGTGTTTGGATTTGAAACCAAGATTGGCAGCCTGATCTATTGATCATTGCTTCTGTTCATAGCATCATGTTGTAGTTCATATTTCTTTAGAAACTATGGAAATTGGAAGGGGGAAATTGTTTCACAAAAAAAAAAAAAAAA | |||||||||
gi|45413888|gb|BP036728.1|BP036728 BP036728 Lotus corniculatus var. japonicus flower bud Lotus japonicus cDNA clone MFB037f12_f TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): CAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGGAAAGAGAGAGAATAATTAATGAGACACATTTTACAAGCTAGAATTAATAAGGGCATCATTGGAAAAAAATAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGGTTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATTTTGGATGACCAGTGATGCAGAATTTCGTCACCATGTCATGTGCTTCTCCCATCGATTTTCAAAGTGCTTGAAATTTCATCACAGAGGTGTACGATGTTGTAGTTGGCTGTTCAGTAGCTAATGTTTCAGTTTGAACTTGAAGTTGATCGCCCACTTTTTTTTTTGGTCCTGTCTAGCGGGCCATGTTTAGATGAAGTTGTTTTTGTTGCTCACTTTTATGATATCATGTTTATGTTGGATCTTTGTTAGTTTGCTAACTAGCATTTGTGGGTGATATCTTTTTGAATTATTATGTATCCAGTGTCATGTAATGTTCTTATCATCACTGTGACGAATGATTGTGTTATTTATTTATTTATTGTG | |||||||||
gi|179646888|gb|DC598673.1|DC598673 DC598673 Lotus japonicus pod (20-30 mm in length) Lotus japonicus cDNA clone MPDL092f10_r 5' TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): TCCAAACATACATGTAGTTCATTTTAATGTAAATCTCTCTCTCTCTCTCTCATATTCGCAACATTATTGGCAGTTGGTTTTGAAACCGATAATAGGGTATTCAAAACTTTACTCCCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATTTGTCTTAAATTAAAATGAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGTGGATAAGAGAGAGAATAATTAATGAGACACATTTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAATTAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATTTCATTTTCTGTTGACCTAAAATCAGTATAAGGGTATTGGAAATTCATTGTTAGTGTCTTAGACTCTTAGTGACACTGAAAATTGCAGGGTAAGGAAAATTGTCCCCGTAAACCTGTTCATAGTTCCTTACGATCACAGCACTGCT | |||||||||
gi|293520805|gb|FS362609.1|FS362609 FS362609 LjFL3 Lotus japonicus cDNA clone LjFL3-055-BG01.r0 3', mRNA sequence TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): GTATTATATGTAAAAATATTATTTAATGCTCTCTTGAAATGCTAAGTGGACAATTAAATATGAACAAAAAATTTTCTTCAAAGTGGACAGTTAAATAGAAACGGAGGGAGTATTTAGATAATAGATAAAAGGTGAGTAAAATGGAACTCTAATGCTAACCTAACCTTCTTCAATCTCAGGTTTTAGTTCCAGTTTTTTTTTTATAAAAATGCATAATTATAACAAAAATTACTTAAAATTGAAATGATGCGGCTGTTTTATCCATTTGCTTTGGTTTTTCATGTTATTCAACACTGCAACTCCTCCATCGATTAATTTTTTTAGGTTGTTTGCAGATGACTTCCCTCTACTCTCAGACCTTTTGCTCATTAAAACAGTTGCTAAACATGCATGCTTTCCAACAACAACCTTAGGGTCAGAGCTCCCAAAATAATAAAATTCACTACAATGGTTTTGAAACTTTAAGAGCTTAATGTGTCTTTCATGAGTGTCTTTGCATTCAGCAATTGAGTTTGTGCCTGTCTTTTGTGCTGAAACATATTTGCAGGAAAAGTCCAATGATTTCCTTTTTGGGACGCATACTAAAGGATTGGTGTATATGATACTGGCTGAGACGAGACACATACCGTAATCTGAAGCTTGCCGATTTTTATTGTCACAATCATTTTTTAATGAGTTAATGCAAACCTTATAAAAATTGTGGATTCTCTTTCGGAATCTTATGAAGGTTGGTGTTGCTATGATTTACATAAAAGAGCCCTTTGATTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|293561891|gb|FS359607.1|FS359607 FS359607 LjFL3 Lotus japonicus cDNA clone LjFL3-046-AH05.r0 3', mRNA sequence TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): TATATTTAGGAACGGAGGGAGTAGCAATTTCTGTTTAGACAACACAACTGCTAAATATTCCTTACAAAGAACCTTTTTTTCCATGAAACTAAACATATAACTGTCAGGGTAGCTAACTAGCTATGATCTAGGTCTAACTGCCTTCCATGACTTGTTGCAACACGTGACAAGAGGAAAACATTGGCCTGATATCTCCTGCCCCCTAAAAAGGCATAATGAAAGTTGCTCTTATGCTGTATTCTGAAAATGACAGTGTTCTGAAAATTTATTCCTGAGTCATTTTGATATTTTCTTTTGCAGCATGGATTTCTGGCCTAGTTCAAACACTGCTCTATGCTGACTTCTTCTATTACTATTTCCAAAGCTGGAAGAACAACCAAAAGCTTCATTTGCCAGCATGAAACCCAAGGTTCTCATTTGGAGAATTTTACAATGAGCAGAGAGGATCCAAACTATTTGTCTGGACACAGTGGTTTCTGAATTACGATTCAATATTTGTTCGTTCTTGCTCCCTCATATACTACTGTACTAATTACTAGGAATGTTAGACAAAAAATCATGAAATTGTTGGTAACGCTACTCAATGCAATCTTAACTTGAAAAGTTATTGATATCTAGATGAGAGATTGGAGGTACAAAAAAAAAAAAAAAA | |||||||||
gi|45577850|gb|BP043956.1|BP043956 BP043956 Lotus corniculatus var. japonicus flower bud Lotus japonicus cDNA clone MFBL053b07_f TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): TTCCAACACGAATAACAAAGGGTAATTTTGGATGTTTATTTTGATTCAAGACAAATTTAATGCATTTTATCTAGTTTTACTACATTTCTTAAACTATGTGAATTTTTTTTTGTTGCTTATAAATAGGACCGGAGGGAGTATTCTATAAATGAGCGGTAACTTCCATACCTTGTGTATTGAGACATCATCCCTCACTCACAAGCAAATACCATTTTCATTCGACCAAAAAAAAAAAGCAAAAATACCAACCCTCCAAAAGAAAACATGAAGAGGGAAAAAGAAATTAAACCNAAGCTCTGATCTAAAATTCACCCTCACAACAATTGAAACCCCGAAATACTCTTTGATGCCGCCTCGTGCTCCTCGTGCTTGCTTCATATTATTTTGGTAGGTTATCGTAATATATACTTTTGTCAGGATATTATGCGAGTATATTAAAACAACATAGAGCACTGACAAGTGATATATTGAAAGTAGATAAACCTTTACCTCAAGAACAATATTAATAA | |||||||||
gi|7775116|gb|AV421454.1|AV421454 AV421454 Lotus japonicus young plants (two-week old) Lotus japonicus cDNA clone MWM195d01_r 5' TTACTCCCTCCGTTCCAATTT EST sequence (targeted fragment marked with yellow): AATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTATTATTCAAAACAACGTGTACCATTAACAGAAGAACATGACATTAGAAAAATGCATCCAAAATTATTTTGTTCACGTGATTTTTTCAAACCACTATTATATATTTGGTGAAAAAAGTGGGACTCAAATATAAATATGGCAGTGTACATCTATGGAAAGAAAAGATAAGAACCAGAACTTTTTAGGAGCAAATATCTCACATTAATTAGGACCCTTGTGTACTTGCTACTTCATCTGCATTTCCATAATAATCACTACCATAATCATCATCACTCTAGTTCCCTTTCTTCATTTGGTATGTCTACGACAGGTTGACC | |||||||||