| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|223418396|gb|GO010670.1|GO010670 LJGBM55TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GTAATGTAATGGTACATGATGTACCAAATGGTTTACCAACTAATTTTGATGCACGTGAACAATGGCCAAATTGTGCATCAATTAAAGAAGTACGAGATCAAGGAAGTTGTGGAAGTTGTTGGACTTTTGGTGCAGTTGAAGCTATGTCTGATCGTATTTGTATTGCATCAAGTGGTCAAAAAAATGCACATATTTCAGCTGAAGATCTTGTTTCATGTTGTTTATTATGTGGACAAGGTTGTAATGGTGGTTATCCAACTGCTGCTTGGGAACATTATAAATTAACTGGCTTAGTTACTGGAGGAAACTATAATACAAGTCAAGGTTGTGAACCATATTCAATTCCATCATGTGATCATCATGTCAATGGAACACGTCAACCATGTCAAGGTGAACAACCAACACCACATTGTCGTCATAGTTGTATTTCTGGTTACCCAACACCATTTGAACAAGATAAACATCATGGTGAAAGTGTTTATTCAGTTCGATCACAAGAACAAATTCAAACTGAAATACAAAAAAATGGTCCAGTTGAAGCTGCTTTTTCAGTTTATGAAGATTTTCTTCCATACAAATCTGGTGTTTATCAACATACAACCGGAGATTTTCTTGGTGGTCATGCAATTAAAATCCTTGGTTGGGGTGTA | |||||||||
gi|223434717|gb|GO024620.1|GO024620 LJMC661TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGAATCTTTGCGTCTCTCTCTCACTGTGCATCGAAAGAATTGAAAGATGGGTCAAGCATTGGGATGTGTTCAGGTGGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAGTTTTCTGAGATTCTGGAACCTGGATGTCATTGCTTGCCTTGGTGTCTTGGGTACCAGATAGCTGGGGGACTTTCACTACGTGTGCAGCAACTTGATGTTCGCTGTGAGACAAAAACCAAGGATAATGTTTTTGTCACTGTGGTTGCGTCTGTGCAATACCGAGCTGTGGCTGACAAAGCATCTGATGCCTTCTATAGGCTCACCAACACAAGGGAACAGATCCAATCATATGTTTTTGATGTTATCAGGGCCAGTGTGCCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAGAATGACATTGCCAAGTCTGTTGAAGAGGAGCTGGAGAAGGCTATGTCAACCTACGGATATGAGATAGTCCAGACCCTCATTGTTGATATCGAGCCTGATGTTAATGTCAAGAGAGCCATGAACGAGATCAACGCAGCTGCCAGAATGAGGTTAGCTGCAAATGAGAAAGCTGAAGCTGAAAAGATTCTGCAGATTAAGAAAGCTGAGGAGAGGCAGAGTCCAAGTATCTGTCAGACTCGGTATTGCTCGCCAGCGCCAGGCCATTGTGGATGGGC | |||||||||
gi|93648320|gb|BW596823.1|BW596823 BW596823 Lotus japonicus suspension-cultured cells Lotus japonicus cDNA clone LjCa-008-DH12 5 TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CCGTGCGCGCTCAGACTGTGGACCCCGGGCTGCAGAATCGGCCTCCGTAGGGGGAAGACAATGGTCTTGCTTTTGCGCAAACTCTAGAACTCCTTTCTCCCAAAATTTTGGCCTATGGATCAACTGATATTGCCTTTGCTCCATATGGTGATTACTGGAGACAGATGAGGAAGATATGTACATTGGAGCTTCTGAGCGCCAAAAGGGTTCAGTCTTTCTCCTTTATTCGAGAAGATGAGGTGGCTAAGCTCATACAATCCATTCACTTGTCTGCATCTGCTGGTTCACCATTCAATCTTTCTAAGAGTGTTTTCTCTTTGGTGAACACCTTTCTTTCAAGGGTTGTGTTTGGTAAAAAATCTGAATGTGAAGATGAACTTTTGTCCTTGATCAAGAAAGCAGTGGAACTGACTGCAGGTTTTGATGTTGCTGAGTTGTTCCCATCATTTAAACCGCTTCATCTCATAACACGGATGGAAGCTAAATTGGAGAACATGCACAAGAAGTTGGACAAGATTTTCGAC | |||||||||
gi|45620891|gb|BP064145.1|BP064145 BP064145 Lotus japonicus mature nodule Lotus japonicus cDNA clone GENLf034g02 3', mRNA sequen TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTAATGGGAAGNTTNTGGAGTGGGGACCACAAGAGGGCTCCAAGTCACAAGAGGGTGCTCACCTCCCCCTATTGGTGGACCTCATTGTGACCCNAATGAAGGACTTGATATCTAGTGNCATGAGGTCTGTTTGGGAAAGCTGTGGGGACAGCAACAGCCTGGTTGTGGATAGTATTGTCAGAAAAGAGGTTGTGGGGAAAGGNTGGNTTGAGATTATGGGACTGGAGGTGGATATTTTGGTGAAGGAAGTGGAGGGGAAGTTGCTTGAGGAACTTGTGGAGGATGCAGTGNTTGATTTGACAGGCAGGGTCTGAATTGGTTAGAATCCCTCATGTGGCTTTCTGCTTTGTTTTTGCAATATTGTAAGTTGTAACTCTATTATTGTTGTATTTGATCATCAACACTGGCCCTACATACCTAATTTATAAAGCAACT | |||||||||
gi|293529722|gb|FS341250.1|FS341250 FS341250 LjFL3 Lotus japonicus cDNA clone LjFL3-070-BH06 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGTTGTCCGTTGTCGGTTTTGCCTCAGGTTGAGAATCCTTTGCCACGCCGCTTTCATCAGCCCATTCCTTCACAATGCGATATACGGAAGCCTTCATGCCAGAAAAACCGCGAGACAGCTTGGACACTCTGTTCTCGCGCATCAAGAAGGCGAAAACGATCAAAAGAGTTGGCCGACTACTTCAGAGAACGAGCTGCCATCGAAGATCTCCATGCAAAGCAGTTACTGAAACTATCGAAAAAGACTTTCATTACCGATAAAGCAGCTTTGGGGACACTGTCGTCGGTATGCGACCGGCTGTTTGGGGAAATTTTAGAGACGGCTGCTGCTCACACGTTGCATGCCCAAAAAATCGTCGAGGCAGTCGAAAAACCCTTGCGAGAATTCTGGAATACGCAGTCGGAATGGAACGACTTGAAGCAGGTGAGTCGCCGACAAGGCCGATGCCATATTTCAGGAAACGCTACTATATAAAACACCAAAGGAATATGAAGAAAAGCTAGGGAAGATCGCCAAGTATAAGAAAGCGGTGGAAAAAGCTTCCGGCAAAAAGTCAGAAGCCGCAGAAAGCAAACTGTCCGCCGCAAATATGGCATTGAATGACTGCCGAACAGCTTGGGAGGCGGAAGCAGCTCCCGTATTTGATAAACTACAAAAGGTCGATGAAGCTCGCCTTGAAAATTTAAAAGATGTGATTTCCAAGTATCATGCAACTAGCTCTGAGCTCGCTCAAGCTCAAATAGACTCTGCGAATCGCATTGCCGGCGACATCTCTGCATTTGACATCCAAGCAGAAATTGATCATTTT | |||||||||
gi|293522296|gb|FS346830.1|FS346830 FS346830 LjFL3 Lotus japonicus cDNA clone LjFL3-006-AH05.r0 3', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAGCTGCTGGACTTGATGATCAAGTGCAGCCTGATTCATTTTACTCTAGATGGCATTCCCTTGAAAGCCCATTGAATCCATCGTTGAGGGACAAATATGCCAATCTCAATGACAAAGAGCCCCAGCCTCTCCATGAAGCCAAGAGAAGGCAGAGGAGATCTAATCAGAAGCTTGTATTTGATTGTGTCAACCTTACCCTTGTAGAAATCACTGGTTACAAATCAGAAAGTCACTTAATGGGAAGGTTGTGGAGTGGGGACCACAGAGGGCTCCAAGTCACAGAGGGTGCTGCACCTCCCCTATTAGTGGACCTCATTGTGACCCAAATGAAGGACTTGATATCTAGTGGCATGAGGTCTGTTTGGGAAAGCTGTGGGGACAGCAACAGCCTGGTTGTGGATAGTATTGTCAGAAAAGAGGTTGTGGGGAAAGGGTGGGTTGAGATTATGGGACTGGAGGTGGATATTTTGGTGAAGGAAGTGGAGGGGAAGTTGCTTGAGGAACTTGTGGAGGATGCAGTGGTTGATTTGACAGGCAGGGTCTGAATTGGTTAGAATCCCTCATGTGGCTTTCTGCTTTGTTTTTGCAATATTGTAAGTTGTAACTCTATTATTGTTGTATTTGATCATCAACACATGGCCCTACATACCTAATTTATTAAAAGCAAAAAAAAAAAAAAAA | |||||||||
gi|293546708|gb|FS354783.1|FS354783 FS354783 LjFL3 Lotus japonicus cDNA clone LjFL3-031-AD10.r0 3', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAATGTCGCAATGAATATTGATCCCGAGTATAAGATGATTAAACGAGACGAAGGACGCATTGAGAAGTATATTCTGAGGAGGGCCTTTGATGATGAAGAGAAACCTTATCTGCCAAAGCACATTCTGTATAGGCAGAAAGAACAATTCAGTGATGGAGTTGGCTATAGTTGGATTGATGGCCTTAAAGACCATGCTGCAAAACATGTTACTGATAAAATGATTCTTAATGCTGGTAATATCTTCCGCCACAACACCCCACTAACCAAGGAAGCATATTACTACAGAATGATCTTTGAAAGGTTCTTCCCACAGAACTCAGCTAGGCTAACTGTTCCTGGAGGACCAACTGTTGCATGTAGCACAGCAAAGGCAGTTGAGTGGGATGCTGCTTGGTCTAATAACCTTGATCCTTCAGGTAGAGCAGCACTAGGAGTGCATCTTTCAGCTTATGATGACAAACAGAACAACTTGATCAACAACAAACCTGTGGAATTTGAGAAGCTCATACCTATGGAAGCTCCTTCTCTTGGTGTTGCCATCCACAGTTAAGGTAAGCTGTGGCAAGAAATGATGATGATGATGATGATGATGAAGCTAAGCATGAATGGAAAATTTGCCTGCTGTGTAATTTTGTTTGGGCAGTGCTTTATATAGATAAGGTTTCCAAAAAGTGTTCTATCCTTTATTATTCTGAATGCTGCTATTTGAAGCGTTGTTTTAATCTATTTGGTTTCAAAAAAAAAAAAAAAA | |||||||||