| mature miRNA: TTGACAGAAGATAGAGAGCAT species: Lotus japonicus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45405641|gb|BP028481.1|BP028481 BP028481 Lotus corniculatus var. japonicus flower Lotus japonicus cDNA clone MF005b11_f 3', m TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GAGTTCTCCTTGCTTCTTCAAAGCAATTTCCTTCATCCTGCTAGCTTTCAGCTGATCAAGTCTCTCAACTTCCACTTCCAGCCCTGGCTCGGACCANNGATCNCAGAGCAAGGGCACCAGGAACAGTGACTTCATCAACTGAAGCTGAGATATTACAGGTAACATGGTCAAATAGACTCCTTTCCTCTGGAGGGGTATCCATTAGATTCCACAGGTCAATTAATTGAGAAGCTAATTCTTGTAGCTTGTGGAGCCTCTGCTTTTTATCTTCTTTCAGCGTTAAGACAGTCTTAGCAAGCCTAGCTAGAGTGTC | |||||||||
gi|45609330|gb|BP052650.1|BP052650 BP052650 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCATATTCATCCCCGACTCACGCCCCTGGAAATGGTTTGGATCCAATGGTGCCGCCTCACGCCATGTCCATGTCCCTTATGGAGCCCTTAGGCCTGAGCCTGCATGATAATAACAGCCGCTTAGAGTCCCTGGACCCCGTCTTGGTTCATAGTGGGAGTGACCCTTGTTCCTCCATGTATAACCTGGGTTCTGATGGATCCCCGAGCCATGAAGCCCCTCCACTATTTCCCTTTCCCATGGGAATAATTTTTTGGGAATTGGATGGAATGGGGTAGAATGAATAAAAATACACTTCCCTTATTTGGATATTTTGCCATTAAATTGAATAAAGCTTTCACTCCCTTATTTGGCTTGGCTAATTAATGGAATGATTATTTTTT | |||||||||
gi|45406165|gb|BP029005.1|BP029005 BP029005 Lotus corniculatus var. japonicus flower Lotus japonicus cDNA clone MF014h04_f 3', m TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTTTGGTGCAGTCCAGCATCACCTGTCCAGCGCAGTCTCCTTCAGGATCTTTGGATTTCGGCGCCGTGAACGAGTACTCGGGCTTGGGTAAGGCGAAAGATAAGCCTCCTGGTCCAGTATTTGTTCTGGATGCAAACACAACCAACCTTCATTGCAATGGAATGCTGCAACNGGGGCCTGATGGATTGGTGGAAAATGAGGACTCACTCACCCTTCCTTTTGTCTGGGAGTAGGTTGTGAGTGGAGTTGTGTCTTTGGTAAATTTATGGAGTTGTTGGTCTTCAAAATAGAATCTTGTACTCCAATAATTAAGCTTAGACTTGTTGAAGCTTTCAGGGGTCGTTGTTCCCTTCAACTCTAATTTATAGCT | |||||||||
gi|223451910|gb|GO041999.1|GO041999 LJNA190TR JCVI-LJ3 Lotus japonicus cDNA 3', mRNA sequence TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGCATATGCAAACACCATAATGAGAAACATGTGGCCACCCCTACCAAAACGGAAGCTGAATCTGGTTATGATCATCACCGGCTTCTGTATCGAATCGACAAGCACAGACAGGATAAGGGACATCCTGATCTTTGGCAAGAAAATGTCCCAAAAGCTGGAATTGGTAGTGAAGCAATGCATGGAACTCCCATCTCTCAGCCTAACCTTGGTGCTCCCAATATTGCCCCATCTGCAAGTGGAAAGGGCAATAGGAAGCTCTCTTCAGACGGCAAACCTGGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTTTGGTGCAGTCCAGCATCACCTGTCCAGCGCAGTCTCCTTCAGGATCTTTGGATTTCGGCTCCGTGAACGAGTACTCGGGCTTGGGTAAGGCGAAAGATAAGCCTCCTGGTCCAGTATTTGTTCTGGATGCAAACACAACCAACCTTCATTGCAATGGAATGCTGCAAACGGGGCCTGATGGATTGGTGGAAAATGAGGACTCACTCACCCTTCCTTTTGTCTGGGAGTAGGTTGTGAGTGGAGTTGTGTCTTTGGTAAATTTATGGAGTTGTTGGTCTTCAAAATAGAATCTTGTACTCCAATAATTAAGCTTAGACTTGTTGAAGCTTTCAGGGGTCGTTGTTCCCTCCAAAAAAAAAAAAAAAAA | |||||||||
gi|45396782|gb|AV773100.1|AV773100 AV773100 Lotus japonicus Pods (20-30 mm in length) Lotus japonicus cDNA clone MPD046b03_f 3', TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): TCCCTCCTCTACCACAATTGATAACCAACTTTCAGCTGCTTCTGTGAGCCACTCGCTTCTCAGGACCAGTTCAGTTCAGGACTCCCCTTGCGCTCTCTCTCTTCTGTCATCATCATATTCATCACAGACTCACGCACCTGGAAATGGTTTGGATCAAATGGTGCAGCCTCACGCAATGTCAATGTCCCTTATGGAGCCATTAGGCCTGAGCCTGCATGATAATAACAGCAGCTTAGAGTCCATGGACCCAGTCCTGGTTCATAGTGGGAGTGACCATTGTTCCTCAATGTATAACATGGGTTCTGATGGATCCCAGAGCCATGAAGCCCCTCCACTATTTCCTTTTCCATGGGAATAATTTTTTGGGAATTGGATGGAATGGGGTAGAATGAATAAAAATACACTTCCATTATCTTGGATATTTTGCATCTACACTTGAATAAAGCTTTCACTCCCAGTACCTGGCTTGGCTCATTAATGAATGATTATTTTTTAT | |||||||||
gi|223436141|gb|GO026435.1|GO026435 LJMBV12TFC JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGAACTCTGATCTCACTCTCACACTCGCACAGAACTTGTTCTCAGTCTCACTCTCACAAGAACACGTTCATCCATGGAAGCTCAGTGCCACCTTCTTGTCAGGTGGAAAATTGTGATGCTGATCTAAGTGAGGCTAAGCGGTACCACCGGCGGCATAAGGTTTGTGAGTACCATGCCAAAGCTCATGCCGTACACATTGCAGGGATGCATCAACGGTTTTGCCAGCAATGTAGCAGATTCCATGAGCTATCAGAATTTGATGACTCTAAAAGGAGTTGTAGGAGGCGTCTGGCTGGGCATAATGAGAGGCGTCGCAAAAATGCAATTGACTATCATGGACAATGATTTCATCAATGAGATGGGCATTGAGGCAAGCATATAAATGAATTAATAAAGTCACCCATTGAAACCTTTTAAATAGTGTTGCTGGTCTCTATGCATGGATGCTCTCTATCTTCTGTCAAATCATTTTTCCTGTATGATGAAAAGATTGGTGCTGCTATTAATAACATCCATGAGAGGTTATTT | |||||||||
gi|293548664|gb|FS318495.1|FS318495 FS318495 LjFL3 Lotus japonicus cDNA clone LjFL3-001-DA10 5', mRNA sequence TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGTTCTTTTTGTAAACCCCTCAATCCTCATCCCCGATTCATCAAATCAAAGAGGGACAAAACCTAAGTCCCCAATACCCCTGCGTCGTGCTCTCCGTCGTTCGCCGTCACCGCCGTTCGTTGGAGGCTCGTCACTGCACTTCATTCACGCCGACTAGCAGAATTGGGTCATTTCTTGATAGCATCCCAACAGCCGTTGATAGTTTCTTTGAGAACTCTGTCTCTGTCTTCTGTCAAGTGAAACACATATAAAATCTCATCTCATTTGCATGGCAACGGTTATCTCGTCAGTGCACACCACACTGTTTGCCAGAGCCTCTCGCTTCCGTCACAGTAATGGCCTAAGAAGCTTAACATTTTGTTTACCTTTCTCATCTTCCGCTGCTTCTGTATCTACTGATAACCTTTCGCGGAAGAAATGGAGGCAGCCGGTTGTCTCAGTTTTGGATCTTGGAGGAGTCAAGATTAGCAGAGAAGATGTAGTGAGGGACGATCCAACAAATAATGTGCCGGACAATATATTTACAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATCCTGAAGAATGCAATATATGAGTATTTTGACACAAATTATTCAAATAAGTTCAATAAGTTCGATGATCTTTGTCCTCTTGTTTCAGTGAAGCAGAATTTTGATGATGTCTTGGTTCCTGAAGACCATGTCAGCAGGAGCTATAATGATACATACTATGTAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATC | |||||||||
gi|45608292|gb|BP051612.1|BP051612 BP051612 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): ACCCACATCTTCCAGCTGCTTCCATAGGCCATAAGTTTGGCAGGCCTAGCCCTTTTGCAGAAAGTGATGGGCTGAGATGCAAAAACATGTTCTGTGATAGCCTAACAAGTTCAGTCCAAGAGTCCTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGGCACACAACACTGCAGGAAATGGGTTTAACCAAATGGTGAACCCTCACTCATCCCTTATGCAGCCCTTGGGCCTGAGCCTGCATGATAACAGCATGGGGCCCGTGTACTCAGGTTGTGATGACCATTGTTCATCAATGTATAACGTGGGTTCTAGTGGGTCCCAGGGGAATGAAGCCCCTTCAATGTTCCCCTTTCAATGGGAATAGAGGGTTTTAGGTTTTATCACAAGTACTTTTTTAATTATCAACTTATCTCTGGACAAGGCCATGAGGACTATCACCTTAGCCAAACACTTGGTGTGAATTTTTTAAGTGGTGGGGTTGCTACCGTGCATACATCCACTATTGCAGT | |||||||||
gi|9278705|gb|AU089181.1|AU089181 AU089181 Lotus japonicus flower bud cDNA Lotus japonicus cDNA clone Ljfb-m83, mRNA sequence TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): ACCANAAACACCATAATGAGAAACATGTGGCCTACCCCTACCAAAACGGAAGCTGAATCTGGTTATGATCATCACCGGCTTCTGTATCGAATCGACAAGCACAGACAGGATAAGGGACATCCTGATCTTTGGCAAGAAAATGTCCCAAAAGCTGGAATTGGTAGTGAAGCAATGCATGGAACTACCATCTCTCAGCCTAACCTTGGTGCTCCCAATATTGCCCCATCTGCAAGTGGAAAGGGCAATAGGAAGCTCTCTTCNNACNGCAAACCTGGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCATTCACCAANTCCACACTTNACTTCGGTGCNTTCCANCNTCACTTCTCTA | |||||||||
gi|45608109|gb|BP051429.1|BP051429 BP051429 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): ACCACAATTGATAACCAACTTTCAGCTGCTTCTGTGAGCCACTTGCTTCTCAGGACAAGTTCAGTTCAGGACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCATATTCATCACAGACTCACGCACCTGGAAATGGTTTGGATCAAATGGTGCAGCCTCACGCAATGTCAATGTCCCTTATGGAGCCATTAGGCCTGAGCCTGCATGATAATAACAGCAGCTTAGAGTCCATGGACCCAGTCTTGGTTCATAGTGGGAGTGACCATTGTTCCTCAATGTATAACATGGGTTCTGATGGATCCCAGAGCAATGAAGCCCCTCAACTATTTCCTTTTCAATGGGAATAATTTTTTGGGAATTGGATGGAATGGGGTAGAATGAATAAAAATACACTTCCATTATTTGGATATTTTGCAATTAAATTGAATAAAGCTTTCACTCCATTATTTGGCTTGGCTAATTAATGGAATG | |||||||||
gi|7746737|gb|AV417559.1|AV417559 AV417559 Lotus japonicus young plants (two-week old) Lotus japonicus cDNA clone MWM145h11_r 5' TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): AGGGACATCCTATGTCAAGATCTCTATTTCCTTCACACAACCAAAAACAATTTCCCTTTCTTCATCATGAAAATGGTGCCGCGTCCACTACCGAAAGCATCTTCTGTGATAGCAATGGCCAATATCCACCTTCCCTCGGGGCTGCCCAAAATTCTGGTTTACGACCACTATTCCACGACACCTCCTTAGGAAGTGAGGACTTCAATGTTTTCTACACACCATCAACTGTTCAGGGATTATCGGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCACAATCCCAGAACTCGCCAAGCCAATCGTCAGGAATTCCTTTGGCTCACCCCTTTGTTATTCCCAGCAGCCATAGCCATCACTACAGCATGAGTCAGGTCTCGGAAAAGATAGGAATAAGCTCACACACTTCTTCAAGCC | |||||||||
gi|223440478|gb|GO030284.1|GO030284 LJMBA62TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA sequence TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGGACTCTTGACTTCTCCATAACTTGTTCATCAGGTGATTCATTGATCCTCTTTTTCTGCAGAATTCCCTGAACACTTATGGATGGAAGGTGGAGTGAGGGAAAGAGGATCTTGATGTACAAGGAAGAGGATGAGTGTGAAGAAGAGCAAGAAGATGAAGAAGAAGAAGAAGAGGCCGTACTTTATGGAGAGGATGGAATTAGGAAGAAAAGGGTGGTGGTGACTGATCTATACAGCAAGAGAGGGTTCAAAGCCGGAGGCTCAGCTGTGCCGCCTTCTTGTCAGGTGGAGGGTTGCTATGCTGATCTAAGCGGCGCTAAGGCGTACCACCGGCGGCACAAGGTGTGTGAGCACCATGCCAAGGCTCCTTCCGTACTACTTTCTGAACAACAGCAAAGGTTTTGCCAGCAATGCAGCAGGTTTCATGAACTGTCAGAGTTTGATGACACAAAAAGGAGTTGTAGAAGGCGCTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCAAGGAGAAGGATTTAATGGATGAGGAGATATATTAATTTCAGACTTTCTCTCTTAATTAGGGGACAAGTCAAGCCGCCAAGCACCACATGAGCATTAAAATAAAATCCCCCATGCATGAATCCTTCCTATTCAATCTGCGGAAGCTCTCTCTCTTCTGTCAAATCCTTGTCATTTTAAGATATATATTGTTGTTGCTGAGTTAT | |||||||||
gi|45612761|gb|BP056010.1|BP056010 BP056010 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): TTTCAGCTGCTTCTGTGAGCCCCTTGCTTCTCAAGGACCAGTTCCGTTCAGGACTCCCCCTGTGCTCTCTCTCTTCTGTCATCATCATATTCATCACCGACTCACGCCCCTGGGAATGGTTTGGATCCAATGGTGCAGCCTCACGCCATGTCAATGTCCCTTATGGAGCCCTTAGGCCTGAGCCTGCATGATAATAACAGCCGCTTAGAGTCCCTGGACCCCGTCTTGGTTCATAATGGGAGTGACCCTTGTTCCTCCATGTATAACACTGGGTTCTGATGGATCCCCGAGCCATGAAGCCCCTCCACTATTTCCTTTTCCATGGGAATAATTTTTTGGGAATTGGATGGAATGGGGTAGAATGAATAAAAATACACTTCCCTTATTTGGATATTTTGCCATTAAATTGAATAAAGCTTTCACTCCCTTATTTGGCTTGGCTAATTAATGGAATGATTATTTTTTAT | |||||||||
gi|223430180|gb|GO023643.1|GO023643 LJMCE25TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GGGACATGAATATCATTTCCTAATTTTGATGAATCATCTTTCTTTTTCAAATCCCACTCATTATTATATGAGTTCCTTCACCACCATGGCTCCTCTGACAAACTTGCATGGAGTCTCCAAAAACTTAACCCCCATTACATGCCTTCCAAATGTGCACAGGACCCTTAGGAGAGGACATGTAGTTGGATTTCTTGGAAGAAAATCACAGGAATTTTCAGAATGTTCAGTTCAGTCTACAAGAAGAGCAGCAGCAATAAGCTTTGCCAGTCTACTCCTTACAGGACAATTCAAGGACAATGTTTCATTAGCTGATAATGGCTTCTGGATTGATGGACCTCTTCCAGAACCAATTGTCATCAACAAGATTGCAAATGAGAAAACGGGGACTCGTTCTTTTCTCAAAAAGAGACTCTACATGGCAAATATTGGAGTCAAAGGAAGTGTGTACAGGATCAAGAAATATGCCTTCGATCTTCTGGCAATGGCAGATTTGGTTAAAGAAGACACCCTCAACTATGTGAGGAGGTACCTGGGGCTCAAGTCCACATTCATGTACCATGATTTTG | |||||||||
gi|45607810|gb|BP051130.1|BP051130 BP051130 Lotus corniculatus var. japonicus pods (less than 20 mm in length) Lotus japonicus c TTGACAGAAGATAGAGAGCAT EST sequence (targeted fragment marked with yellow): GTTTGGCAGGCCTAGCCCTTTTGCAGAAAGTGATGGGCTGAGATGCCAAAACATGTTCTGTGATAGCCTAACAAGTTCAGTCCCAGAGTCCTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGGCACACAACACTGCAGGAAATGGGTTTAACCCAATGGTGAACCCTCACTCATCCCTTATGCAGCCCTTGGGCCTGAGCCTGCATGATAACAGCATGGGGCCCGTGTACTCAGGTTGTGATGACCCTTGTTCATCAATGTATAACGTGGGTTCTAGTGGGTCCCAGGGGAATGAAGCCCCTTCAATGTTCCCCTTTCAATGGGAATAGAGGGTTTTAGGTTTTATCACCAGTACTTTTTTAATTATCAACTTATCTCTGGACCAGGCCATGAGGACTATCACTTAGCCAAACCTTGGTGTGAATTTTTTAAGTGGTGGGGTTGCTACCGTGCATA | |||||||||