| mature miRNA: ATGTTGAATTTGGGGGCACTT species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56927701|gb|CK652038.1|CK652038 m.07.H3.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): CTGCTGAGTGCCGAGACTGCCGGCAGCCAAGTAGGAGACACCCATCCCTCTTCCCAGTTGGCGTCGGCGACATCTCCTTTTCACTCCTCAGTCGACGACAACTCTTCCCTCTCCCCAGTCGGCGACATCTCTCTTCCTCTCCCCAGTCGGCGACAACTTCTTTCTTTCGTCGAATCGGTTATTTTAGCAATCAAGATTTGACTGGAACTCTCCTCAGATTCACTATAAAGAGGTGAGCAAAGTCAGCAAAGAAGACAGCAGATAGAGGGGAAAAAAACTAAGAGCGGTAGCTATGTCTTTCATGAGAGGAGATTTGCTGACGAGAACCAGAAAGCTCGTCAAGGGCTTGGCCAAAGCTGAGCCTGCTTGGCTCAAAGCCATGGAACAGGCCCCACCTGCAACATTTCCTCGCACTGACGGGAAAGTAAAGAAAATCAGTCTCCCAGAGGATCCTCATGTAAATACTTTCTTCAAGTTGCATCCAAATTCAATATATGACGATGCCATTAAGATTTCTGGTTTTGAAGCCCCTCCAGCCCGTGTATTTGGTTTGCGGATGCTT | |||||||||
gi|119012758|gb|DV453348.1|DV453348 CV02012B2A02.f1 CV02-normalized library Manihot esculenta cDNA clone CV02012B2A02.f1, mRNA s ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): AGAAGTAGATAAGGATACAAATCGTGCCAGAGTTGTTTTTAAGAAGTGTTCTGATGCAGAAGCTGCATATGGTAGTGCTCCAAAGTTCAACATTTTTGGTTCAATACTTGTAAATTACCAGCTCAACTATACTGTATCTGTACCATTCAAAAGTCAACCAATGATCACACTCCATGGTGAGGAAGATGCAACACTTTTTCTGGAGTTTTGAAGAAGCAGATTTGATATAAAAATTTAGATGGCTGCTTGTAGATCACTGGATCACTGGGGAGTAGTTTAACTTTATCCCTTTGCATGAGGTCTCCTGCATTATGGGTTTGGAATAGCAATTCTCTGGAGCAGTTAACTAGGAGAGGGGAGAGCAGATGTTGAAGAACTGCGGCTTCTACTCTACTTGCGATGCTCTTACACGTGCTTACGTTAATGGGATGCTGAAGAAAGTATCAGATTGCTAATTCTTCTGGTTGTCTCTCGTAATTTTGTTTTCTGATATGGAGTAGTGATTTTATCTTCTATTGCATCATCCCAGTTCTTTAGAAGCTCTATTTCTGATATATATATATATATATATTGAATTGTTTTTCAAAAAAAAAAAAAAAAAATGC | |||||||||
gi|182639580|gb|FF535561.1|FF535561 CASRE88TF CASR Manihot esculenta cDNA 5', mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): GTGTGAGTAGTGCTTTGGTAGAGACAACTACAAATGATTCGTTGGGTTCTGGTGTTGGTAGTGCTTTGGCACATACACCTATGGATGATATGTCGAGTTCTGTTGACCAAGTTCCTCCAGCTCCTGAAAAGAGTGGTGGTGCATCATTGCTTAGAACAATAGGTCAAGGCCTATTTTCTATAGACGTGGCGAGTGCATTGGTTCACAAAGCCATAGATGTTGCACTTGGTCCTGGTGTGGCTAGTGAGTTGGCACACACCACGTTGGATATTTGTGCAAATCAACATGACAATACGGTGTCTGCAAAGGCTGCTGCTGCTGTTGGCGTATCGATCGGTTTGTGTAAATACCTAGGTTCTGGCAATCAGGCAACAGGTGGAAGAGAAGCACCAAACTCACAAAAGAAGTTCAATTCTAAACACAGTTATGGAAGAGGCACACCTCCTGCACGAGGCGGAAGGCATGGTGCCTCAACTAGCCAAAGGCAAGGGACATTCAACAGGCACCCGCAGGCGCACTCAGGTGCACCCAAATTCAAAAAGCAGCCAGGTGGGTCTAAACCATGATGGTCCTTTGAGCCAAGAGACTGAAAAAAGAAAGGAGAGAAGGGGGTCATGGTGTAAAATTTTATGCATTATGCAAGTCCTTTGTCTTTGAGCCCTTGTTTCTTTTATGAGTGGTGGTGGCTTCACAGTATGATACTGAGTTACTGACTCGTTATTTTCAGTGTTACTGTAATATGACCCTTGAGTTGAAAGTAAAGCGCATCCCCTTCTACTTTGC | |||||||||
gi|56918143|gb|CK642480.1|CK642480 sg_ssh.01.N7.u SG107-35 Cassava subtracted (SSH) Manihot esculenta cDNA, mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): TCGTTGGGTTCTGGTGTTGGTAGTGCTTTGGCACATACACCTATGGATGATATGTCGAGTTCTGTTGACCAAGTTCCTCCAGCTCCTGAAAAGAGTGGTGGTGCATCATTGCTTAGAACAATAGGTCAAGGCCTATTTTCTATAGACGTGGCGAGTGCATTGGTTCACAAAGCCATAGATGTTGCACTTGGTCCTGGTGTGGCTAGTGAGTTGGCACACACCACGTTGGATATTTGTGCAAATCAACATGACAATACGGTGTCTGCAAAGGCTGCTGCTGCTGTTGGCGTATCGATCGGTTTGTGTAAATACCTAGGTTCTGGCAATAAGACAAGTGGAAGAGAAGCACCAAACTCACAAAAGAAGTTCAATTCTAAACATAGTTATGGAAGAGGCACACCTCCTGCACGAGGCGGTAGGCATGGTGCCTCAACTAGCCAAAGGCAAGGGACATCCAACAGGCACGCGCAGGCGCACTCAGGTGCACCCAAATTCAAAAAGCAGCCAGGTGGGTCTAAAGCATGATGGTCCTTTGAGCCCAAAGACT | |||||||||
gi|56916667|gb|CK641004.1|CK641004 mb_dsc.03.F22.u MBra685 Cassava subtracted (DSC) Manihot esculenta cDNA, mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): TCGGTTTGTGTAAATACCTAGTTTCTGGCAATAAGACAAGTGGAAGAGAAGCACCAAACTCACAAAAGAAGTTCAATTCTAAACATAGTTATGGAAGAGGCACACCTCCTGCACGAGGCGGTAGGCATGGTGCCTCAACTAGCCAAAGGCAAGGGACATCCAACAGGCACGCGCAGGCGCACTCAGGTGCACCCAAATTCAAAAAGCAGCCAGGTGGGTCTAAAGCATGAT | |||||||||
gi|182639344|gb|FF534248.1|FF534248 CASR046TF CASR Manihot esculenta cDNA 5', mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): GGTCGAGTCTGTTGACGGGGAAGCATCATCGGCTCCGAAGACACGAAGAAAGAGGGTTGTCCGGAAGAAGGTGTCTGCAAGTTCAGCATAGTTCATTTGATGTAATCACCATCATCCAATTTTGGCACCTGGTAAATGATATGAAACGAAACCATGCATCGATTTGAGGATTAAAAATCGGCTCGGAAAATTCATCATGATTCTTATGTACATCTGCAGATGAAACCAAAGCAACCATCACCAGAAGATTTTTTTTTTTTATATATATAATTTCTTTGGGAGGAAAATATGTTTTAATTTTTGCATTCACTGGTTTTGTTTTTAGTTGTAATAACAGAATCTTTAGTTGAATTCTCAACATTGATATTGACTGTAGTAGTTTAGCTTTGAGCTAACACTTGTTCTTTTTCTGCATTAGTGAAATAATTTCTCTTACATCTTGTAGTTTG | |||||||||
gi|56926364|gb|CK650701.1|CK650701 m.02.I2.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): GGTGCTTTCCTTGGACTATATGCAAACTTGAGATACCAGCTATTATGTGGATTTGATAGAGCAATGGTCAACCATTTTGATGTTATCGGAGTGGCACTATTTTTTAGCACAGCTTTAAGGATTTTGAATGTGCAAGTTGGAGAGACATCAAGGCTGGCCTGGATAGGTGCAGAGGCAGATCCTCTGGTTCATTCGGATAACCTTTTGAAGGCTTACAATAGACCTTCTGAGGAAGTTGCTACAGCATCATCTTCAAAATGGTTTATATCAAAGCAAACCCTTGTTTCCGGGCTAGGGCTTCTCGGCATCAAACAAGGGAACGTCGAGTCTGTTGACGGGGAAGCATCATCGGCTCCGAAGACACGAAGAAAGAGGGTCGTCCGGAAGAAGGTGTCTGCAAGTTCAGCATAGTTCATTTGATGTAATCACCATCATCCAATTTTGGCACCTGGTAAATGATATGAAACGAAACCATGCATCGATTTGAGAATTAAAAATCGGCTCGGAAAATTCATCATGATTCTTATGTACATCTGCAGATGAAACCAA | |||||||||
gi|56926505|gb|CK650842.1|CK650842 m.02.M16.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): TGTTTCCGGGCTAGGGCTTCTCGGCATCAAACAAGGGAACGTCGAGTCTGTTGACGGGGAAGCATCATCGGCTCCGAAGACACGAAGAAAGAGGGTTGTCCGGAAGAAGGTGTCTGCAAGTTCAGCATAGTTCATTTGATGTAATCACCATCATCCCAATTTTGGCCCCTGGGTAATG | |||||||||
gi|164408266|gb|DB938778.1|DB938778 DB938778 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_052_N0 ATGTTGAATTTGGGGGCACTT EST sequence (targeted fragment marked with yellow): TAGACCAAGTTTTTTTAACCAAAATCCAAATTGGGAATCTAGTCAATTACTCGGTGATCGGGACCGACAGAGAAATCGAAATGGCAGATCCAACCCTACACCATGAGACTCATCCCATCAAGCAAATCGCCATAGACTACACTCCAGAGGCCTGCACCCACTGCCCCGTGTCCAATTCCATTACCCTCACCTATGATCACCGCGGTGGGGCTCGGTGGCGGAGTACCACCCGCTTCCTCTATGGCACCTTCAGCTCCCTCATCCAATGCCCTCAAGGCAACACCAGTGGCCTCAACTTCAACATCTATCTTTCGTCTCTTGAAGGTGACAAATCCCAAGACGAGATCGACTTCGAGTTCCTAGGCAAGGACAAGACCATAGT | |||||||||