| mature miRNA: CCTGTTTGGTTGCTGAGAAAA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164382004|gb|DB931427.1|DB931427 DB931427 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_032_I0 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGGGAAAATAATAAAAATTTTCCCTAAAAAATTTTCTTAGTAACCAAACAGGGTTTAGCCACCTGACACCTTTTCTTGCACTTTGTTTTCGTCTCAATGGAAGTGTCCGGCGGAAAGCAAAATGGCGATCACAAATATAGCAATGGGTGCTGCGTGGAGAAGGATCCATTGAAGTGGGGTTTAGCGGCGGAGGCATTGAATGGCAGCCATGTAGAGGAGGTGAAGAAAATGGTTAGGGAATATAGGAGGGCGGTCGTTCGACTTGGGGGGGAGACGCTAACTGTCGGACAGGTGGCGGCGGTGGCGAGTGGAGGCGGCAATGGAGTGGCGGTGGAGTTATGCGAGTCAGCTAGGGATGGTGTGAAGGCAAGCAGTGATTGGGTAATTGAGAGTATGAATAAAGGGACAGATAGTTATGGGGTCACTACAGGGTTCGGTGCTACTTCCCATAGAAGAACCAAGCAAGGAGCCGCGCTGCAGCAGGAGCTTATTAGGTTCTTGAATGCCGGAATCTTTGGCAAAGGAGCAGAATCAGGCCATACATTGCCGCG | |||||||||
gi|182384949|gb|FF381686.1|FF381686 CASLO94TF CASL Manihot esculenta cDNA 5', mRNA sequence CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGACACCGCTAGAAGCTTCAAATCCATGTAAGGTCCACTCAAATTTTCCTTTTCCTTTTTCCTGCATTTTCTCGCCAACCAAACTGATTATTTATAGCATTCTCTCCTTTTGTTTTCTTTCTCTCGCGATCTCAAATCTCTTTTCGTTATTTATATGTTGAATCTTGATAAATTAAACCTCGGGCCCTTCTTCTCTTGAAGCATTGCAGAAATCTGAGATCCAATTAGGAAATCGAGATGGGGTTTTTCGTAACAACTCTAATTTTTGTAGTGATCGGAATAATCGCGTCGCTCTGTACCAGAATCTGTTGCAATAGAGGCCCGTCTGCTAATTTGTTCCATTTGACATTGGTTATAACAGCAACGGTCTGTTGTTGGATGATGTGGGCTATTGTGTATCTTGCACAAATGAAGCCACTCATTGTTCCGATTCTAAGTGAAGGAGAGTGAAGATGTTGCTGGAAAAGCATAGTAGTAGGACGACATTGATAAACCAGGAACATGTATTGTCCATTGGTTGCCGGAGAATGTCCGAGTAAGACTCATGGATCATTCAATATTTTCTTATTTTGGGTCTGCGTGTAACATTTATCAGTGTGAACTTTGAATTGATTTTAGTTTGGTGGTTCACTTC | |||||||||
gi|182641309|gb|FF535117.1|FF535117 CASRA37TR CASR Manihot esculenta cDNA 3', mRNA sequence CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGGAGTCAGATCACATGTGGTTGTACTATCTTCCAAGTCGTTTTATTAAGGGCTTGCATTTGAAGCAGAATGGTTCTTCTCACTTTGAGGTTTCATTTGAAGTACTTGGAGCATCAGCTGGTTCGACCCTGAAGAGATGTGGGGTCTATTTGGTTTACAAGCCAAATGAGGTGGTGGAGGATTCAAGTGTTAGCCGATCTGTTAGTTGTCAAATGGAATCAATGTCATTTGATCTCAAGAGAAGCTGTGACAATGACTTGGAATGTGATGTTGATTTAATGGTGAAGAAGAGGACAACAGAGGCATCTCAAATGGCTAAGAACTGTGTTGAACGGCATCTGGAGCTTCCAATGCCATTCAATATCGGTGAGCAGCAGGGGGAACAGTGGCTTTCATTATCTCTGCAACCACACAGGAATCAAACGATGGAGGAGCATGGAACAACGTTCAACATTCAGGGCAATTAGTATAAGCTCACTTTGCAACAGTGGCTCTGATGACTCAAGATCCAGTGGCATGAGAGATTTGGTAAATTTATCGGATTAACAATTATTTTTTTTCCAGGGAATCAATGACAGGCACCCAAAATTACAGAGCGTGTTCTTCTTCCTCCAGTATCCATGGCAGATTTGTGAACAAACGCTTATGAGAATTAACACTCATTTTATTTTGTGTGATTT | |||||||||
gi|164408437|gb|DB934547.1|DB934547 DB934547 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_041_A1 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GATCAAGGGGATTTCTGTTAGATTTGTGATATATTCTGTTAAATTCTGTGTGGGTAGAGTGAAAACCCCCTTCTTTGGTTGGTTGTAAATTTATGATTCTTTTTCAAGTTCTATTGATGGCTATAAAAGGGTTCATTTCACGCTTCCAGTATTTGACTGAATGGGTTGTTTTTAGTTTTTTTAATTGTTTTTTAAATACCCACAAACTTTGACTTTCAATGGGAGGTTCTTCGAACCAGAGTTCATAATGTCTGTTTGTTTCCTGAGAAAAGTATGTTGAGGTCAATATTAGGCTATTCATTTTCTTGAATCTCCTCTTTGTTATATTGGCTTCTCTGTGCTGCGAGTAAAGATTTTTTACTAAAAGGAAGTGGTGGGTTTTTTTTTGTCTGTTCCAAGAGTTTAGTATTGTAATTTTCTTGATTTTCTCGCAACCAAACAGTGTTGACCCGTAAACCCATCAATGGTCTATTCTACAACTCTCTTTTCAAGTCTTCTATTTCCATCTCTACCGAAGAAATTTCATAGCATGAACGCTGAAACTAATTTTCTATTGTGAAACAGAGCCCACTGGTGGAATCAACAAGAAAAAGAAGTTGCAAAGATTTGTAATTAGCAATATAGAACTAAACGATGGGATCTTTCAAGGGTC | |||||||||
gi|164405615|gb|DB925029.1|DB925029 DB925029 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_014_M2 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGCTTTCTCTAAGTGGTTTTCTGCTCAGACAAGGAAAAAACCGGCCAGCGGGTTTTCACGACACCTGGAAGGCGAAAACTGGCTCTCCGTTTCGCGAGAAATCGTTTTCTCAGGAAACAAACAGTTGGCTTTCTCTTTTATTCTTTGCAAGAGAACTGTGATTTTTGTTTTCTTGAGGTCTTAGTCTTGTCCGAGTAAAAATTGAGAGGAACTTCTGAACTACTGCTTGAGCTCAGAAAATGTGTAAAGGCTTGTGACTTAATAGTTTCAGTTAGAGATTTAAAAGTGCTTATCGGAGCTTGAGAGTTGCTTTTACAGATGCTGGAATGAGGATCTAGATTTAGCAAAATTTGTTGGTTAGTTATAGTGACCTTGAATATTTTGTGGACTTGTGCATGGAAACGAGAGAAGGATTAACTTCAGGGGTTACAGTGATAGGAGCTGAAGCTCCATCAACTTATCATGTGGCGCCAAGGACTGAAAATCTTAGCCAGATGACCGTTTCACCAGCAGTGGCTGTGTCACCAGTCAGTGTGGGACTGACTGGAACAACAGANAAGAAGAAGAGAGGTAGGCCTAGGAAATATGGACCAGATGGGACGGTAGCTAGGGCATTGTCGCCAATGCCCATTTCTTCTTCAGC | |||||||||
gi|56926506|gb|CK650843.1|CK650843 m.02.A13.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GTCAGAAATGGTTGGTGTTGAACGATTGGATGTAACGGAGAGCTAGATGGGTTATAAGGTTTGGGTTTGAAGAGGGGAGGGCATTTCGTTTTGCTAAGAAAGAAGCTCTTTGCAGTATTGGTGGTTCTCTGTTCTCTCTCTGGTTTTCTCTTCCAATTTTCTTGCTCTTTCTTCTTCCCTTTCTCGGTAACCAAATAGAGAGATTTTGGTCAAATTTTTCCAGAATTGAACAAATCAATGTTGAGTATC | |||||||||
gi|164390809|gb|DB936901.1|DB936901 DB936901 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_047_I0 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGCTGAGCACTGTCCAAGTGAGCTGCTTGGTTAAGCCAAAGTAATGGGATTCCTATTCATTTCCTCAGCAACCAGATAGAGGGAATTGAAAATTTCCCAGCTTTTGGTGCTTTTTAAGGATTGGATTAGACTTTACTGTTCTGGATAAGAGATTTTAAGTCCAATTTTCTCCGCTATTGGTACAATGACTGCAACTCCTGTCTCCAGGGAGGCATCAGATAATGATGAGGTTCCTATGCAACAGAATCTGCTCTTCTCTGATAGTCTTGAGGATTTGAAGAATTTGAGAACACAGTTGTACTCAGCAGCCGAGTATTTTGAACTATCCTACACAAATGATGACCAAAAACAGATAGTGGTGGAAACATTAAAAGATTATGCCATTAAAGCTATTGTGAATACGGTGGACCATTTGGGTTCTGTGACATATAAGGTTCATGATCTGGTGGATGAGAAGGTTGATGAAGTTTCTGGAACAGAATTCCAAGTCTCTTGCATTGAGCAGAGGGTGCGGACATGCCAAGAATATATTGATCATGAGGGTCTCACCCAACAGTCACTCGTAATAAATGCTCCAAAGTACCATAAGCGGTACATCTTGCCAGTTGGGAAGACAATGCATGGAGCCATCCACCCGAAATCAGA | |||||||||
gi|164382028|gb|DB935630.1|DB935630 DB935630 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_043_P1 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGACACAGCTCCGCTCTTATGGAGGAGATTCTCTCTAATTTATGAGCTGCATCAGAGTTGAGAAGAGAAGCTCCCAAACCTAGCAAACAATCCCCCATTCTTCCTTTCTTCTTTATTTCTCTATTAACAAAGCTCCTGCATAGCTCAACATCAAGTCATCTCATTCTTTCCACTCTCAGAAAGGTTGGTCTCTTTTCTTTTTCTCTTTTATCACCCATTTCCTATTTATTTTTTGCTTCTTAATTTTAGCCCTTTTTTTTAAGTTGGGGGAGATTTTTGGGTGCTTTTTTTCTCTCTTTTTGGGTTTTCTTTAAAATTTTCCCCATCTTCTTGGTGAGGTGCAGATGAAGAGGAACTTATGTGGAGAGAATTAACTAGATGTTCTTAAATTATGCTTTCTTTCCCATTCTTGCATTTTCTCAGCAACCAAACAGTGTACACTTTCATTTAGTCACAGTTTTCAAACAGCAAGGAGTTTTTGTTTTTCTTCTCTCTCTCTCTCTCTCTCTATCGTTCTTTTTGTCAATGAATTATCAGTTTTCAAATTGATACGAAAATCTTTCATTATTCATTGTTCCTTTCAGGATGAATTATCGTTTTCCTTAATATCAGCCGCAAAGTACGTTAGGACTTAATATCCACATCTTTAACTTTGGCATTCGAATT | |||||||||
gi|164405058|gb|DB938583.1|DB938583 DB938583 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_052_E0 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GATCAAACGGTCCCTAGCAAGCCTCTGATTATCAACTTTCAGTATCTTGGCATTTTTCTTTGTAACTAAACAGCAATGGAGGGCAAGGAAGAAGATGTTAGATTGGGAGCTAACAAGTACAGGGAGACGCAGCCCATCGGTACGGCGGCTCAGACCCAAGATGACAAGGACTACACCGAGCCACCACCAGCGCCGCTGTTCGAGCCATCGGAGCTCACTTCTTGGTCCTTTTACAGGGCTGGAATTGCAGAATTCATAGCCACTTTCTTGTTCTTATACATTTCTGTTTTAACTGTTATGGGTGTGGTTAAGGCACCCACCAAGTGTTCGACCGTGGGGATTCAAGGGATCGCTTGGGCCTTTGGTGGGATGATCTTCGCTCTTGTCTACTGTACTGCTGGCATTTCAGGAGGTCACATAAATCCGGCGGTGACATTTGGGCTGTTTTTGGCAAGGAAACTGTCCTTGACAAGGGCTTTGTACTACATGGTGATGCAGTGTCTTGGAGCCATATGTGGTGCTGGTGTAGTGAAAGGATTTGAAGGGCGTAAACAGTATACTTTGTTGGGC | |||||||||
gi|164391907|gb|DB955164.1|DB955164 DB955164 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_052_A0 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): CCCGGCTCATACCAAAAAAATTATTTTCCTGAAATCCCTTTTTCTGATCAACCAGACAGAGACTTCATACATACTTCAGAAGTGTGGAACTCAATACGAAAAATCTGAAAAAAAAAATACAAGGCCTGGAAAGGAAGACATTTGTTAAAGATGCAAAGATAAGTCATTAGATGGATTTTGGCATTTAAATTGCAGCAGTAGAAAGCATA | |||||||||
gi|164407264|gb|DB938701.1|DB938701 DB938701 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_052_J1 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): GGGGGAAAAATAATAAAAATTTTCCCTAAAAAATTTTCTTAGTAACCAAACAGGGTTTAGCCACCTGACACCTTTTCTTGCACTTTGTTTTCGTCTCAATGGAAGTGTCCGGCGGAAAGCAAAATGGCGATCACAAATATAGCAATGGGTGCTGCGTGGAGAAGGATCCATTGAAGTGGGGTTTAGCGGCGGAGGCATTGAATGGCAGCCATGTAGAGGAGGTGAAGAAAATGGTTAGGGAATATAGGAGGGCGGTCGTTCGACTTGGGGGGGAGACGCTAACTGTCGGACAGGTGGCGGCGGTGGCGAGTGGAGGCGGCAATGGAGTGGCGGTGGAGTTATGCGAGTCAGCTAGGGATGGTGTGAAGGCAAGCAGTGATTGGGTAATTGAGAGTATGAATAAAGGGACAGATAGTTATGGGGTCACTACAGGGTTCGGTGCTACTTCCCATAGAAGAACCAAGCAAGGAGCCGCGCTGCAGCAGGAGCTTATTAGGTTCTTGAATGCCGGAATCTTTGGCAAAGGAGCAGAATCAGGCCATACATTGCCGCGAACAGCAACAAGGGCAGCCATGCTTGTGAGAATCAATACTCTCCTCCAGGGTTACTCCGGCATCAGGTT | |||||||||
gi|17923175|gb|BM260135.1|BM260135 baa16b02.x1 Cassava EYC library1 Manihot esculenta cDNA 3' similar to SW:RL27_ARATH P51419 60 CCTGTTTGGTTGCTGAGAAAA EST sequence (targeted fragment marked with yellow): ACCTGAGCTTGGAAAAAAACCACCTATTCTTGCCAGTCTTGAACCTCTCCTCAAACCTCGCCTTGGCCTCCTTGGCAGCAGCAACCTTCTTCTCCTTGCTCTGCAAAGCGGCGGCAAAAACCACGTCCTTGATGTCAACGTCAAGGGTGTAGCGGGTCGGCATCAAGTGCTGGTAGTTGACAAGCTTGATAAAGCACTTTACACGGGACTTCTTGGCAGGCTTCTTGGCAAAGTCCTTCTTAATAACCTTGCTTGGGAACTTCTTTATCCCTGCAACCAAGCAGGGGCCATAGGGGCGGCCGCGAATGCCTTCATCGAAGGACTTGACGATCACCCCCTTGCGTCCAACATACCGGCCTTGGAGGACAATCACACCTTGTTT | |||||||||