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mature miRNA: CTGTTGGTCTCTCTTTGTAAA
species: Manihot esculenta
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|164405138|gb|DB934036.1|DB934036 DB934036 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_039_K2 

CTGTTGGTCTCTCTTTGTAAA
||||||.||||. |||.| ||
GACAACTAGAGGAAAATAGTT

EST sequence (targeted fragment marked with yellow):
CATTAATATCAAATAATGGGAAATATATAAATGTTCTTGTAACTTTGGGCAACACGGCAACAGAATCTTTGATTATGCCAAAATAGGTCCTCCAAAGAACCATTCTGAATCAGTTCAGTCAAAATATGCTAAACAAAAACGAGCAGCAATTTAAAACATCGTCTGCAATTTGATAAAAGGAGATCAACAGTAAATAAATAGCAAAAACAAAAAAAAATTTCAAGCTCATACAGCAGCAGCTTCAGCTGGGGCCTCAGCCATTGTTTCATCTGCTGGCCTTTCCAACTTCACACCTACATCCTCTGAATAATCACCGTGAACCTCCATCAGTTTTCCAAGATCAAATTTTGGAGCTTTCAAAATCTTTACTTTCCGAATGAAGACATTCTGTAATGGGTAGATACTTGAAGTTGCCTTCTCAATTTCCTTGCCAATTATCTCAGGAATGAACTTTCGGACCAAATCCTTGAGATCAGAAGACGACGCTTGGGCTATCATGATCTCCCTCATTTTCCTACGGATCTGTCTTATCTGACTGGATTGTGCATAACAAGTCCTCTTCACCTGGTTGGGTCGTCTCTTTGTAAACCCAATGCAG


gi|164372673|gb|DB939065.1|DB939065 DB939065 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_001_M1 

CTGTTGGTCTCTCTTTGTAAA
 ||.|||||||| ||.|.|||
AACGACCAGAGAAAAGCGTTT

EST sequence (targeted fragment marked with yellow):
TGCCTATATGGCTATAATTTCAAAAACAGAGAGGTCTTTCTATGCCTATTTGCTTGTTGTTGCATTATAATTACAGATTTTCTTCCAAAATTAAGAAACATGCTACCTGGCTTGCAAAAATTCTTCAACAGGCCTTACCATATTCTGCTCAAAGTCCCATTACTGGGAGTTGAAGGGGAGTATGTCCGTGAAGAGCTTCAACTAAGATAGGCTTCAAAGCACTAATTTAATATTTCAGTCGGTCAGATTGAGGATGATACGTAATATTGTAGGCCAATTTTGTATCTGTATACTTGAAAAGAGTTTGAGGATGATATGCAATATTGTAGGCCAATTTTGTATCTGTATACTTGAAAAGAGTTTGCGAAAAGAGACCAGCAAAGATTCAGAAATGAGGATCTGTGGTACTCCATGTAACTTCACCACAATATCAAAGAAAATTTTGGCAACACCAG


gi|164395959|gb|DB946187.1|DB946187 DB946187 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_P0 

CTGTTGGTCTCTCTTTGTAAA
|||||||| ||  |.||||||
GACAACCATAGTAAGACATTT

EST sequence (targeted fragment marked with yellow):
CAAATGGCTTACAAGGTTGCCGCTGCTTCACCTGCGCCCGAGTTGGGCCTTTAAGTTTACAGAATGATACCAACAGCATGTCTTGTTGTTAATGAACTTCGCTTTGAAAAACATCAACAAGCTGAGTCTCTTCCTCAAATGAATCTCCAAGCTCAGTCCATGGGAACTGCTAATTATACTAACGAACTTGATGATGACCCTGCCCGCTCACAGATATATAAATCTCAGCCTCCACCTCCTACGTTGCCTTCGCGCTACCGAACAATGACCAAAGCCACACCAATCTTGTTATCAGAGGCTTTGGCACAGTTGCATACAGAAAACATAAAACAACAACCGTAAGCCTCACAGTCACCATCTGTGGACTGAACAATTTTGGATCTGAGTGCTTTTGGTAATTTTGAACTTCCCTTGGATTTTCAGTTTTGTTGATATTATGTGTGTTCAATTTGTAACAGAAGTAACAATATGGTTTTCTTACCCTTATGTTTCATCTATCTTTGCCTTGGTTACTTGATACGGATGTTTCAGATAATACAAAAAGCGTGTAAAAGGTTTGGTGCTTGTTAAAGAGATTGTGCAACTTTAAATTAATCTAAGCGAAGTTCTTCAATTGC