| mature miRNA: AAAGGTGCCAATTATGAGTGT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30102114|gb|CB894945.1|CB894945 EST647737 HOGA Medicago truncatula cDNA clone HOGA-33C5, mRNA sequence AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): GTTAGGTGTACCTGCTGTTCCCTTCACTTACGTTGCTCATCTTCTTGGTATTGTCGCCATCGTTTTGGTCTTGTTCTGGAACTTACACTTCAGAGGTGGTTTGGCTTGGAATTCTGACAACAAAGCTCAAATCTTCAATCTTCATCCTGTTCTTATGCTTATTGGATTAATAATAATTGGAGGTGAAGCTATTATAAGTTACAAATCTCTTCCATTGAAGAAGGAAGTAAAGAAATTGATACACCTTGTACTCCACGCCCATGCATTAGTACTTGGAATAATTGGAATTTGTGCTGCGTTCAAGAATCACAATGAAAGCGGGATTGCCAATCTGTACAGCTTACATTCATGGCTTGGAATCGGGGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGGTTTGTGGTATTTTTCTACCCTGGCGGGAGTTCAGAGTTAAGACGTGAGTCAGTTCCATGGCACGTGTTATTTGGGCTGTTTGTGTATATTTTGGCTCTCGCCACTTCTTCTCTTGGGTTTCTCGAGAAGCTCACATTCCTGGAGAGTTCAGGAGTTGCAAAATACGGGGCTGAAGCTTTACTTGTCAACTTCAATGCTATAATCACAATCTTATTTGGTACCTTTGTTGTATTAATCTGCCATATCTCAA | |||||||||
gi|20277888|gb|BQ141765.1|BQ141765 NF026H10IN1F1091 Insect herbivory Medicago truncatula cDNA clone NF026H10IN 5', mRNA sequence AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): TTAAGAACACTAATTTTTTCTTTCTTTCTTCACTCGAAATTTCTTGCATCCGCCAGCTGCGAATTAACCCTCACTAAAGGGCAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGTTCTTTCTTCCGACACTGAACGCTATAACCACTTCACTCTACTCTCAAACCAAAACTCTTTACACATGCATTCATGTTACAGCCACAGGCTCCACTTACATCCCCTTCAAATTAAACCGCTTAACTCCTCGAACCGGACCAGTTCCAGCACCTGCTATTTTCTCCAGAGAAGCGAACCACAAAGAAGAAGCAAGTGAAAGATGATGACACTTTACTTGACAACAGTCTTCGGTTTACTTTTATGGAAAACCTCATGAACCGGGCTAGGAACCGTGACTCATCCGGACTCTCTCACGTATTGTTTGACCTCACTTGCTGCTGGCTCCGAGTTTCTGATACCATCCTCCCCCTTCCGGACAGCCTGCCTTCTATGCTCATCATTGGCATCTTGACCTTTACCTCAAAAGGATTCACCTGATGAATAGAGTTATTGTGTACTGGTTCATCCCATTTTTTCCCCCCCTTTTTTTATCCTCTTGTCGTCCACCGATTTGGTTTCCTTATGTTATATTTCATATCACTCAGCCATATAATTGTTTTCCCCTGACCATTCATTTTAACATCCACAACATTCCCGCACACCTCCCCCCACTCCTCTAGTCTCTACTATCTACTATCTCACGCTTGCTCTCTCTGATTCCACACGTCCTTTCACTCCTCACTCTCTCTGCTCTCTTGCGCACTCCTATATCACTGCACTTGTTAGGCGCATATATATACTAGTTTATTCTTAATATCCCACTAGTTACTTCATACACATTATTATCCGCCCACTATATCAATATATTCCCCA | |||||||||
gi|83668208|gb|DW018616.1|DW018616 EST1227577 MTY Medicago truncatula cDNA clone MTYB879, mRNA sequence AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): CGGCCGGGGACTTTCATAATCACTTTCCACAAACACAAACATAGAAGAAGATGGCGTTAGGTGTACCTGCTGTTCCCTTCACTTACGTTGCTCATCTTCTTGGTATTGTCGCCATCGTTTTGGTCTTATTCTGGAACTTACACTTCAGAGGTGGTTTGGCTTGGAATTCTGACAACAAAGCTCAAATCTTCAATCTTCATCCTGTTCTTATGCTTATTGGATTAATAATAATTGGAGGTGAAGCTATTATAAGTTACAAATCTCTTCCATTGAAGAAGGAAGTAAAGAAATTGATACACCTTGTACTCCACGCCCATGCATTAGTACTTGGAATAATTGGAATTTGTGCTGCGTTCAAGAATCACAATGAAAGCGGGATTGCCAATCTGTACAGCTTACATTCATGGCTTGGAATCGGGGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGGTTTGTGGTATTTTTCTACCCTGGCGGGAGTTCAGAGTTAAGACGTGAGTCAGTTCCATGGCACGTGTTATTTGGGCTGTTTGTGTATATTTTGGCTCTCGCCACTTCTTCTCTTGGGTTTCTCGAGAAGCTCACATTCCTGGAGAGTTCAGGAGTTGCAAAATACGGGGCTGAAGCTTTACTTGTCAACTTCAATGCTATAATCACAATCTTATTTGGTACCTTTGTTGTATTATCTGCCATATCTCAAACTCCTCCGGCTGCTGATGACTACGCACCCATATAGATTCACTTGGCAATGGCATCATGTTTTATGAATTTATTAAGTTAAGTAATATCACGTCTGCTGTTGTAGTTTGTGTACTTGGGAC | |||||||||
gi|7570475|gb|AW695713.1|AW695713 NF098A09ST1F1068 Developing stem Medicago truncatula cDNA clone NF098A09ST 5', mRNA sequence AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): AAGATGGCGTTAGGTGTACCTGCTGTTCCCTTCACTTACGTTGCTCATCTTCTTGGTATTGTCGCCATCGTTTTGGTCTTGTTCTGGAACTTACACTTCAGAGGTGGTTTGGCTTGGAATTCTGACAACAAAGCTCAAATCTTCAATCTTCATCCTGTTCTTATGCTTATTGGATTAATAATAATTGGAGGTGAAGCTATTATAAGTTACAAATCTCTTCCATTGAAGAAGGAAGTAAAGAAATTGATACACCTTGTACTCCACGCCCATGCATTAGTACTTGGAATAATTGGAATTTGTGCTGCGTTCAAGAATCACAATGAAAGCGGGATTGCCAATCTGTACAGCTTACATTCATGGCTTGGAATCGGGGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGGTTTGTGGTATTTTTCTACCCTGGCGGGAGTTCAGAGTTAAGACGTGAGTCAGTTCCATGGCACGTGTTATTTGGGCTGTTTGTGTATATTTTGGCTCTCGCCACTTCTTCTCTTGGGTTTCTCGAGAAGCTCACATTCCTGGAGAGTTCAGGAGTTGCAAAATACGGGGCTGAAGCTTTACTTGTCAACTTCAATGCTATAATCACAATCTTATTTGGTACCTTTGTTGTATTATCTGCCATATC | |||||||||
gi|161109258|gb|EY476622.1|EY476622 METAT43TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): GCATCTTCTTGGTATTGTCGCCATCGTTTTGGTCTTGTTCTGGAACTTACACTTCAGAGGTGGTTTGGCTTGGAATTCTGACAACAAAGCTCAAATCTTCAATCTTCATCCTGTTCTTATGCTTATTGGATTAATAATAATTGGAGGTGAAGCTATTATAAGTTACAAATCTCTTCCATTGAAGAAGGAAGTGAAGAAATTGATACACCTTGTACTCCACGCCCATGCATTAGTACTTGGAATAATTGGAATTTGTGCTGCGTTCAAGAATCACAATGAAAGCGGGATTGCCAATCTGTACAGCTTACATTCATGGCTTGGAATCGGGGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGGTTTGTGGTATTTTTCTACCCTGGCGGGAGTTCAGAGTTAAGACGTGAGTCAGTTCCATGGCACGTGTTATTTGGGCTGTTTGTGTATATTTTGGCTCTCGCCACTTCTTCTCTTGGGTTTCTCGAGAAGCTCACATTCCTGGAGAGTTCAGGAGTTGCAAAATACGGGGCTGAAGCTTTACTTGTCAACTTCAATGCTATAATCACAATCTTATTTGGCACCTTTGTTGTATTATCTGCCATATCTCAAGCTCCTCCGGCTGCTGATGACTACGCACCCATATAGATTTCACTTGGCAATGGCATCATGTTTTTATGAATTTATTAAGTTAAGTAATATCACGTCTGCTGTTGTAAGTTTGTTGTACTTGGGACTAAGGGAATACGATCTGTTTATATGGTTGGACTCGGCTTGTATTTGATATTCAATAGTATCCACGAAACATGAATTATATTGATTTG | |||||||||
gi|151388840|gb|EV258711.1|EV258711 MTYDN53TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): GGGATTGCCAATCTGTACAGCTTACATTCACGGCTTGGAATCGGGGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGGTTTGTGGTATTTTTCTACCCTGGCGGGAGTTCAGAGTTAAGACGTGAGTCAGTTCCATGGCACGTGTTATTTGGGCTGTTTGTGTATATTTTGGCTCTCGCCACTTCTTCTCTTGGGTTTCTCGAGAAGCTCACATTCCTGGAGAGTTCAGGAGTTGCAAAATACGGGGCTGAAGCTTTACTTGTCAACTTCAATGCTATAATCACAATCTTATTTGGTACCTTTGTTGTATTATCTGCCATATCTCAAGCTCCTCCGGCTGCTGATGACTACGCACCCATATAAATTTCACTTGGCAATGGCATCATGTTTTTATGAATTTATTAAGTTAAGTAATATCACGTCTGCTGTTGTAAGTTTGTTGTACTTGGGACTAAGGGAATACGATCTGTTTATATGGTTGGACTCGGCTTGTATTTGATATTCAATAGTATCCACGAAACATGAAATTATATTGATTTGGATCGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|13380274|gb|BG456949.1|BG456949 NF099D09PL1F1076 Phosphate starved leaf Medicago truncatula cDNA clone NF099D09PL 5', mRNA se AAAGGTGCCAATTATGAGTGT EST sequence (targeted fragment marked with yellow): GCACCAGCATCGTTTTGGTCTTGTTCTGGAACTTACACTTCAGAGGTGGTTTGGCCTTGGAATTCTGACAACAAAGCTCAAATCTTCAATCTTCATCCTGTTCTTATGCTTATTGGATTAATAATAATTGGAGGTGAAGCTATTATAAGTTACAAATCTCTTCCATTGAAGAAGGAAGTAAAGAAATTGATACACCTTGTACTCCACGCCCATGCATTAGTACTTGGAATAATTGGAATTTGTGCTGCGTTCAAGAATCACAATGAAAGCGGGATTGCCAATCTGTACAGCTTACATTCATGGCTTGGAATCGGGGTTATTTCCCTTTATGGCATTCAGTGGATATTTGGGTTTGTGGTATTTTTCTACCCTGGCGGGAGTTCAGAGTTAAGACGTGAGTCAGTTCCATGGCACGTGTTATTTGGGCTGTTTGTGTATATTTTGGCTCTCGCCACTTCTTCTCTTGGGTTTCTCGAGAAGCTCACATTCCTGGAGAGTTCAGGAGTTGCAAAATACGGGGCTGAAGCTTTACTTGTCAACTTCAATGCTATAATCACAATCTTATTTGGTACCTTTGNTGNATTATCTGCCATATCTCAAGCTCCTCCGGCTGCTGATGACTACNCACCCATATANATTTCACTTGGCAATGGCATCATGTTTTTATGAATTATTAAG | |||||||||