| mature miRNA: AAATACTTCCTCTGATCACTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57567254|gb|CX540229.1|CX540229 s13dNF63E05GS038_463730 Germinating Seed Medicago truncatula cDNA, mRNA sequence AAATACTTCCTCTGATCACTG EST sequence (targeted fragment marked with yellow): GGTTGTACTTGCTTACAGTGGTGGCTTAGACACATCAGTCATTGTCCCATGGTTGAGAGAGAATTACGGTTGTGATGTTGTGTGCTTCACTGCTGATGTTGGCCAAGGTATAAAAGAATTGGATGGTTTGGAAGCCAAAGCAAAAGCCAGTGGAGCCTCCCAATTAGTCGTAAAGGACTTGAAGGAGGAATTTGTTAAAGATTACGTATTTCCTTGCCTGCGTGCTGGTGCCATTTATGAGAGGAAGTATTTGCTTGGGACCTCAATGGCCCGTCCTGTAATTGCAAAGGCCATGGTGGATGTTGCTAAAGAAGTTGGAGCTGATGCTGTCTCCCATGGGTGTACAGGGAAAGGAAATGATCAGGTTCGATTTGAGCTCACTTTCTTTGCGCTGAACCCCAAGCTAAACATTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCCATCGAGTACGCTAAAAAGCATAACGTTCCTGTTCCGGTGACAAAAAAATCCATCTATAGCAGGGATAGGAACCTATGGCATCTTA | |||||||||
gi|157980785|gb|EX529057.1|EX529057 MTGland_A049-_2007-05-31/MTGlandA049-_E05_020_1 Medicago truncatula A17 glandular trichome M AAATACTTCCTCTGATCACTG EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGNATGGAAACTTGAAAAGTGNCCATTGAAAAAAAAGAAGAGAATATCTAGGTCCCTTATGAAGTTATATAATTCACACNNNTTCCTCCGTCTTTGTTGAAAGAAAACGGAGAAAATACTCGCCTTGCCTCTTCATTCTATTATANNNNTAGTAAGGGAAATACTAATAATGTCATTAGGGCTAAGGATACTTGTTAAAAAGTTTAAAATGAAAATTTTATCTTAAAATTGTATATTTAATATAGGCCAAATACATCCCCAGATACTTTAAGTTTTATATTTATTTTAGATAGGTCCTTTAAATTTTTAACGTTTCAGATAGATCCTTTAAGTTTCATCGTTACAGGGACATTTGTTATTATAACCCTAATGGCTAATAGTAATAACCCCACCCCATAAAGGCCAGCTGTATCCGACATAGTCCTCTCAACCAATTGCAGTAGTTATGTGGCACACAGGGTACAACGGGCCCAATTATATGATATTTCTTCCAGTTTTATTTATAAGAAAAATTTGATTTTTTAGATTCATTGTGTAATTAATGTATCTTGTCTAAAATATAGATCAAATACATTATTTATACAATAAATCAAAAAAGTCAAATATTTCTTATAAATATGATCGGAGGGAGTATTTTGTGAAGCCAAATTGGCTAAATGGTGACCAATTCCAATTGGATGCATAGATTACTACTAGTAATTTAGTCAACNAAAGCAACTTATGACTTATGACCTGAGGAGGAAGGGAGGGACTACTACNTGATAGTTACATGAGAGGGGGTGANCCTATAATATCACTAAGTAGCTGCTACTTGCCAATTATATGCTTTCNTGATGACTAGATTGGTATATGTCACTTGCTATTGGTTGCTTTATAAACACAATGCATTTCNANNGCTGTATTGNATGCTTTTGTTTNTGTTTTCNTTTGTTTACTCCNATTGNAATCNAATANAAATAGAACNTTNCTATGATGAACTCCNAGANANTAAAGCTTTNATTG | |||||||||
gi|11957333|gb|AW695067.2|AW695067 NF091B04ST1F1032 Developing stem Medicago truncatula cDNA clone NF091B04ST 5', mRNA sequence AAATACTTCCTCTGATCACTG EST sequence (targeted fragment marked with yellow): GTTCTTTCAAACAAAAAAAAGGTTGTGAAGTTGTTCTTGTTCACTTCACCAATGGCTCAGTTGAAAGCATTTCCTTCACATCCATGCGCTACTCCTACTCCTTCCCTTCATGCAACAGAGAATATTCTGTTTAATCGGGTTTGGATGGCTAACCCATGTTCATTCAAAAAGCTGAAACCAAGAGCTGGTGTTGCTGCCGGTAGACTTCAAGTTGTAAAGGCAGTATCGCACAGTGATACAGATGTTGAAGTTTCCGAAGCCAAGAAGGGTAGTGGCTTGCGTGGAAAATTGAATAAGGTTGTACTTGCTTACAGTGGTGGCTTAAACACATCAGTCATTGTCCCATGGTTGAGAGAGAATTACGGTTGTGATGTTGTGTGCTTCACTGCTGATGTTGGCCAAGGTATAAAAGAATTGGATGGTTTAGGAAGCCAAAGCAAAAGCCAGTGGAGCCTCCCAATTAGTCGTAAAGGACTTGAAGGAGGAATTTGTTAAAGATTACGTATTTTCCTTGCCTGCGTGCTGGTGCCATTTATGAGAGGAAGTATTTTGCTTGGGACCTCAA | |||||||||
gi|27523151|gb|CA990257.1|CA990257 EST643765 GESD Medicago truncatula cDNA clone GESD-28E17, mRNA sequence AAATACTTCCTCTGATCACTG EST sequence (targeted fragment marked with yellow): TTTGTTAAAGATTACGTATTTCCTTGCCTGCGTGCTGGTGCTATTTATGAGAGGAAGTATTTGCTTGGGACCTCAATGGCACGTCCTGTAATTGCAAAGGCCATGGTGGATGTTGCTAAAGAAGTTGGAGCTGATGCTGTCTCCCATGGGTGTACCGGGAAAGGAAATGATCAGGTTCGGTTTGAGCTCACTTTCTTTGCTCTGAACCCCAAGCTAAATATTGTGGCTCCATGGAGGGAATGGGATATTACAGGGAGAGAAGATGCCATTGAGTATGCTAAAAAGCATAATGTTCCCGTTCCAGTGACAAAGAAATCCATATATAGCAGGGATAGGAACCTATGGCATCTTAGTCATGAGGGCGATATTTTGGAAGACCCAGCTAATGAGCCCAAAAAGGATATGTACATGATGTCTGTAGACCCGGAGGATGCTCCAGATCAAGCAGAATATTTAGAAATTGGTATAGAGTCGGGTCTTCCTGTTTCACTCAATGGGAAGACGCTTTCACCAGCATCTTTACTCGCTGAGCTCAATGAGATAGGTGGAAGGCACGGAATTGGCCGGATCGACATGGTTGAGAATCGGCTTGTAGGCATGAAAAGCCGCGGAGTTTACGAAACACCTGGTGGAACTATCCTTTTTGCTGCCGCACGGGGAAGTTGGAGTCTTTGACACTTGATCGAGAAACAATACAGGTCAAAGATTCATTAGCACTTAAATATGCAGAGTTAGTGTATGCCGGA | |||||||||
gi|157981007|gb|EX529279.1|EX529279 MTGland_A052_2007-06-25/MtGland_A052_C09_038_1 Medicago truncatula A17 glandular trichome Me AAATACTTCCTCTGATCACTG EST sequence (targeted fragment marked with yellow): TTATGTTATTCCAATTCATCAAGTTCCATTGCGTCTCTTGCAATTCCTAGAACATAGTGTATCGGAAGCTTCTTCAATGCTTTAACACCACAACTTGCATCGTAACAAAAAGCAAATTAAACAATTGAATGTGAACATTTTAATTCTCATTATTCTCCCTAAATTTCTCTGGCGCATTACCATATTTTTTTCAGCCTCCCGATGTGTTTGATCCATGGTTTCAGATTGTGGCTTCGGTTATGCTGCAGACCTTCATATTACTGTGAAACCTGAGAAAATGCCGCTGAGGTGATCGAATTTGCAATTGCGATGTTGTCATAGAAGCTTCAAAATCTCTGATATTACTGCTGCAACTGCGGTCGCAGCCCACAACTTAAAATCATATAGTCTGATCTACAGCTTCAGAACAATCATATAACTTGTGTTCTTTATCCTTCTTTGATAGCAATTTGACCTGTTTGATACTAGCGATCATGGTAGTGGCAACATGAGGCTTCATCCTTCTCTTTTGGATATTAAACCAAACTATCTAGAAGAATTGAGAATGGCACTGAGCATAGGAAGTGTTTTTCGGACCAAAGAAAAACGTTGCATTATCCTTAGCCTTTAAGGTTTTTGCTTAGGCATTAAGGTCTCATGATCCTGTAAGCACCGCGATGCAGCACCGCCGTTTACTTTCTAAGCATATAAGACTTGCTTTTCTTAAGTATTAAGTAACTAAGCCTATAAAAGACTATGCTAATAACCTTTCATGAATCAATATTGCAAATCAATTTGTGAATGAAAATATAGTGTTGTTGTAAAATCTCTTCTTCTCTCTTCTTTCCCAGATACATAATTAGTGCATGAGTTTGAGTGATTTATGTCTTACTGATATC | |||||||||