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mature miRNA: AAGCTCAGGAGGGATAGCGCC
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|11913873|gb|BF648743.1|BF648743 NF049D10EC1F1089 Elicited cell culture Medicago truncatula cDNA clone NF049D10EC 5', mRNA seq

AAGCTCAGGAGGGATAGCGCC
|| |||||||||.|||| ||
TTAGAGTCCTCCTTATCCAGG

EST sequence (targeted fragment marked with yellow):
AACTTAACCAACCTATCATATCTTATTTTAGGAGGCAACAATTGGTCTGGTGGACCTATTCCTCCTGAGATTGGTAAATTAAACAATTTATTGCATCTTGCAATTCAAAAAAGTAACCTAGTCGGTTCCATTCCACAAGAAATTGGGTTTTTGACAAATCTTGCATATATTGATTTGTCAAAAAACTCTCTATCTGGTGGTATTCCTGAAACCATAGGGAACTTGAGCAAATTAGATACACTTGTTCTTTCTAATAACACCAAGATGTCTGGTCCAATTCCACATTCCTTGTGGAACATGTCTAGCTTGACCGTACTCTACTTTGATAACATAGGTCTTTCTGGTTCAATCCCTGATTCCATACAAAACTTGGTTAATTTGAAGGAACTTGCACTTGATATCAATCACCTTTCTGGATCCATTCCTTCCACTATTGGAGACTTGAAAAATCTCATTAAGTTGTATTTGGGAAGTAATAATCTTTCTGGACCAATTCCTGCCTCTATAGGAAATTTGATCAATTTGCAAGTCCTCAGTGTCCAAGAAAACAATCTCACTGGAACTATTCCAGCTTCAATTGGAAATTTGAAGTGGCTCACTGTTTTTGAAGTANCTACCAATAAACCTTCATGGAGAATTCCAAATGGT