| mature miRNA: AAGTTGCATAATCGAGTTGG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30099233|gb|CB892065.1|CB892065 EST649034 KV3 Medicago truncatula cDNA clone KV3-53G7, mRNA sequence AAGTTGCATAATCGAGTTGG EST sequence (targeted fragment marked with yellow): AATTTCCCTTTTAATTCCTCAATTTCCATTTCTAATTTTTGTTTGGCATCTAGTTGCTTTTCCAATTGAAGGATCTTGTTTAAGGCCTCTTCTTTTTCTCTCTTTTGCTCTTCAACAAGCCTGAAGACATTCTCATCGGCTATCTTCTGCTCCTTTGAAGCCAACATGAGTGATTCATTCCTCGAGTCTTTCTTCTTCTTGTCCTCTTCCAGTTTCTGCCTCTCTTGATCAGTTAGTACCTCACGTTTATTCAGATCTCTGCTCCAGGTATCTAGCTTCCGCATTTTTTCATCCAATTCATTACGCAACTTTTCTTGTTCTTCCAAGATCCTTCGTACCTCTTCACGAGCTTTACGCTGCATGCTCCTTGACTCTTCAACAAAAGCATTGTGAAGCCTGTCTTTCTCCTCCAGCATCCTACTTAAAGACATGGTCTTCTCGTTATACTTATATTGCATTTTGTTGAGGTTTTCATTTGTAATATCAATTTCATTAGCCAGGTTTTCCACAATGCTATTTCTGCTTTCAGATGCTTCTTGAACAATATCTGAAATTGTCCTCAGCCTTCCTTTGTTCCGAAAGTACTCCCCGATTGGCCCTCCACAATTATAATCATCTTCA | |||||||||
gi|148766735|gb|ES613429.1|ES613429 MTGland_B007_2007-05-09/MTGlandB007_H03_009_1 Medicago truncatula A17 glandular trichome Med AAGTTGCATAATCGAGTTGG EST sequence (targeted fragment marked with yellow): TTACGGCCGGGNNAACATTTATTAATACATTGTCCTACTTTTGGTTCTCTTNGGTAACATGTGAAACGATGACTTGGTGTCTATTCTGTGAATCCCCAACATGCTATGGATCATTTCTACCAGTTCATACATTCGACAGGTGGGCACATTTCTCGGCGTTCATTCTTACATATGATTTGACTTTGCTGTATTTGGGTTCTTTGGAGTGAACGTAACCATCCGCTGTTTTCTAATAAGGCTAAATCGGTTATGCAGCTTATGGAAAAGGTAAAAATCACTTCTCTATCGTGGTTAAAAGCGAAAAATATTTGCTTTTCTTTTGGTTACCATACGTGGTGGCAGCAACCCTTTGTTTGTTTGGGGATTGACTGACCTTTGTTTTCCACTTTCTTGACTCTCAAGGACTGATTGTTGGATCTTTGTTCTGCTTCTCTATGCACTCCTTGTGATAGGGAGCAGAATTTTTTGTTAACATATATCATTTTGCCTTGTTC | |||||||||
gi|14880133|gb|BI271535.1|BI271535 NF057G10FL1F1084 Developing flower Medicago truncatula cDNA clone NF057G10FL 5', mRNA sequenc AAGTTGCATAATCGAGTTGG EST sequence (targeted fragment marked with yellow): GANCACATCCACTCCATTATGCAGCTTGTGGTGGAAATGCACAATGTTGTCAACTATTGATTGCCAAGGGTGCTAGTCTGACAGCCTGANAATGCAAATGGATGGACTCCCTTGATGGTTGCTCGTTCATGGCATAGAAGTTGGCTTGAGGACACCTTAAAAGAACCTCCAGCCGAAAATTTACAAGTTCTTNCTTNGCCATATATATCTCTTCCACTTATGAGCATTGTAAAAATTGCTAGAGAATGTGGCTGGAGGACAAGTGAATTAGCACCTATATGCTTAGATCCATGTGCAGTTTGTTTGGAAAGAAAATGTATGGTCGCTGTAGAAGGTTGTGATCATGAATTCTGTACACAGTGTGCCTTGTACCTTTGTTCCACAAACTCAACTTCAACAAGAACAAATGGTCCCCCAGGTTCAATAGCTTGTCCTCTATGTCGCCACAGTATANTCTCATTTGTTAAGCTTCCAGACACAAGACCACTACCAAAAGTAATGCAAAGGTCAACAACAAACTTGTCCTTAACATTTTGCACGTGTTCAAGTGAAGTTTCTTGGTGATTCCACAGACATGACGACACCATTTTGCAAACCAATAACTTCACGTGGATCCAAATTTTTCTTNCC | |||||||||
gi|209566615|gb|GE349590.1|GE349590 MEUAD77TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence AAGTTGCATAATCGAGTTGG EST sequence (targeted fragment marked with yellow): GTTTCAAACCACAACATGACTTCAATCTCACAAGGTCTTGTTTTAACCACAGCCCATGGTTGTTTCAACTACCGTTCTTTATCTTACTTTCTGCAAACAAAAAAATTCATCAACATTTCAATTTCATGAAACACCCAATTCAGAAAACAAACCTATTCTACGATCTTGCTTATACACAGAGGAAAAGAAGAGAGAAAAAAGAAGGAACAAGAAGAAAGTGAAATTTTCAGAAAATGTGATGGTGAAGGAATTTAGAGAAAAACCGGGGAAGAAAAACAGAGTATCAATTAATGAATGCAGAAATGAAATTCCAGAAACAAAAGCAATGCCAGCAAATAGAGTTGCTTTGTACAATGGAATTTTAAGAGATAGAGTTCAAAGAATGGGGTGTTGTCATTGATCATCTTGGTTATGGAACTTAGAACATGGAAAAGAATTTTTATGGTGTAGAACATGGGAGGTTAGAACAATAAGAAATTAGAAGATGGTAAAAAATTAAATCTTTTTCTTTTCAATATTTGTTTATTTTTTTTAGGTGGGTGCGTTGGAAACAATATTTGAAGTCCTAATTGATCAAAAAAAAGGTTGTGAATTATGGTGGAAAGGGGTATTCTTGTGAAGGAGAAAAAGTTTGAGAAAAATCTAATGTATTCTTGTGGTTGTAAATAGTTGCTTGACTATGTCCAACTCTTGGCAATTTTAAGAGTGAAATTAATTGAAACAAAAAAAAAAAAAAA | |||||||||
gi|260527009|gb|GT144239.1|GT144239 METCP53TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence AAGTTGCATAATCGAGTTGG EST sequence (targeted fragment marked with yellow): TCTTCTATGAAAAAGCATTTTCATTTGTCGAGGATTAGGTCTGAGAGAGCGGTTAGGGAAGCTGCGATGGCGAGGAAGAAGACTAAGGAAGCTATTGAGCATGTGTTTGCGCTTCAAAAGCTTCAGGGTTCAATTGGGTTGACTAATGGGAACAATGTTGTGGTTAAAAAAGAGGAGTTGAATGGACATTCACAATCGCCGAATGGTCCTCTCATTAGCAGAGTTGGGGCTAATGGGATTGGGAGTCCTGTGATTGGGAACAAAATTGGTGGGGGTAATGGAAGTGATGGACGAATAGGGAATAATGGCAGTGGGAAATTTGGTCCTAGTTTCAAAGCTTTTTAACATTTGCTAGTGGATGTGACAACAATTGAGACTTATCAAGATAGACAAGGGCTTGGGTGTTTCTAGAGTTGGTGCTGCTGTGGAGTTTTGAGTAAGAGTACACATTTGATCCTGTTGTAGTTTATACATGATACTTTCATGTATCCATTCCATTCCCTTGTAAAGCTTCTGACCTAATGTGATTATGCAATTTTATGTACTTTAAGCGCCCGGCTGTAATTAGGTTTGAGCTTCTTTTTGTCTGTGTTAGAGTATCAGATGTTAATCCATTTTTATACTTCCCTCTTCATTTTCTTTGACTATCATGTGTCAAATAAGACTATGGTTATCTGGGATTTTCATAGCTGTATTCACAGTGGTTCCTCCTCTTCATTTTCTTTGACTATCATGTGTCAAATAAGACTATGGTTATGTGGGATTTTCATAGCTGCAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|22089274|gb|AJ498831.1|AJ498831 AJ498831 MTPOSE Medicago truncatula cDNA clone mt--acc955209b07, mRNA sequence AAGTTGCATAATCGAGTTGG EST sequence (targeted fragment marked with yellow): GCAGGCATTATGGCCGGGGGTTCTACTTGAGCATGTTAATTCTGCAGTTGCTTCTAGTTAGTAAATACATAGTCCTACAAGAACTAACAGAATTGACAAAATGGAGCACACTATTTTAACCGACTCTGCCTTGGATAGCTAACAGTGGTATAAGATTATTAGTATTACAGTCAATATTTAGACCGCTAGCGTTGGTTTTGGCGTAACCACTTTCTTTTCTGAGTAGGAATCAAGCTCTGTATTCCAGACTTTACAACATTGACACACACTGCGCATGAACCACAAGCGATAGACCGCAATGGTTTTTGGTATAACCACTTATGAGTAATGATCTCAACTTTTGTTTACTCTAATCTAATTCTGTCAATGAAAGAATTTCTGACCGGATTATGCAATTTTAAGCTGTATTCTGTCAACTAGTATATGTTGTTATTTACTCCAAACACTGATCATTTGCTTGTAAACAATGTCTGGCATCCATTAGAGCAAATTCCTTTTCTTTGCATTTCACTGGCTGTAAAAAATGTTGGTGACCCTTAGCAGGTCTTCTCAATGTTGAATAGTATGTTAACTACCAAATCAGTT | |||||||||