| mature miRNA: AGAATCCTGATGATGCTGCAG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7643260|gb|AW736407.1|AW736407 EST332421 KV3 Medicago truncatula cDNA clone pKV3-13C16, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GAAATTGAAGCTAGCTGGGACTCTTGCAAGAGTTGTTGCATTCATTATAGGACTAAACGTTCTTGTATTGGTCACATCAGTGTATAGAAAGAAGCTTGGGCATATAAAAAAGTTATTTCTCTGGAAGCACAAGAAGGAGAAGGAAGATGGTGAATTGGCTACAATCTTTGATTTTTCGACCATCACTAATGCAACAAATAACTTCTCTGTCAGAAACAAGTTGGGAGAAGGTGGTTTTGGACCAGTGTACAAGGGCGTAATGGTAGACGGCCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCAGGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGATGTTGATCTACGAATTCATGCCCAACAGAAGCTTGGATTTCTTTATTTTTGATACTACGCGAAGCAAATTACTAGATTGGACTAAGCGTTTGGAAATTATTGATGGTATTGCTCGGGGGCTGCTGTATCTCCATCAGGATTCTACATTAAGAATCATTCATAGAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCC | |||||||||
gi|9056759|gb|BE240575.1|BE240575 EST404624 MHRP- Medicago truncatula cDNA clone pMHRP-45L2, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GATGCTAAGTCAAACTCACCTTCATTCTTCATCATCTAATGAAATGCATAGATATGCTCCTTTTAGAGATCAGTCACAAATGCTTCAAAGTTTTGCACATACTCATCCCCCAAATATTCATTTTCCCAGCAGCAGCTATGGAAGCCGAGTTGGAAGTGATCTTTCGTTATCAACGAGCAATCATCATCAACAACAACAATGGCAATCAGGGCCACATGATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCACCCTCTTCTTCTCAAGCTTGGCAGCACATAAATGGCTTCCACAATCTCATGAGACCCTCTTGATCCCTATTTAACCATTCTACATTCAAATAATCATATTTGCTAAGTTCTTCCCTAATATCTTCCCCTATGTTGTCAATTTTATTAGCATAT | |||||||||
gi|57491710|gb|CX523019.1|CX523019 s13dNF87G06VI052_471842 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GGCACGAGGCCATATAATAGACCAAACAATATTGAAGCATATGGAAGGGATTTGCATGGAGAGAGTGAAGCATTGAGGATGCTAAGTCAAACTCACCTTCATTCTTCATCATCTAATGAAATGCATAGATATGCTCCTTTTAGAGATCAGTCACAAATGCTTCAAAGTTTTGCACATACTCATCCCCCAAATATTCATTTTCCCAGCAGCAGCTATGGAAGCCGAGTTGGAAGTGATCTTTCGTTATCAACGAGCAATCATCATCAACAACAACAATGGCAATCAGGGCCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCACCCTCTTCTTCTCAAGCTTGGCAGCACATAAATGGCTTCCACAATCTCATGAGACCCTCTTGATCCCTATTTAACCATTCTACATTCAAATAATCATATTTGCTAAGTTCTTCCCTAATAT | |||||||||
gi|30101636|gb|CB894467.1|CB894467 EST647259 HOGA Medicago truncatula cDNA clone HOGA-31E20, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): AACAGTAATTCTGGTGTTGGGGTTGGTGGTTATGGTGCAATGGGTCTTGGTCCATCTGGTTTACCCAATGGAATGAGGCCTGGGATGGGAAATAATTCAGTCATGAATGGAAGGGGAGGAATGGCATCGATTGCTCGGGAACAAGCCATGAATCATCAGCAGGATTTGTCAAGCCAACTACTTAGTGGGTTAGGAGCAGTAAATGGTTTTAATAATCTCCAATTTGATTAGAAAGTGTTGACGAGAGCCTTTGTTGTGCCTGTTTGTGATCACATTGTAACCACGCATGCATATACTCACCACTCAACTTTCTTGCTTCTGAAAAACCTACGGTAAATGCATAGAGATGCGAGATTAATTATGGCAACATGTGTCCCAAACAAAGGCATAATCTTGTGTAGCATGAGGAATGCTTGGTTTGCTTTCAACACCCCTGATGATGGCAGAATGCAGTCGGGTAGTTATAGGTCTTTGTACTAATCTGTCTTTTTCTTTTTTACATATATATATAGGAGAATGGAAAATTTATTGGCTGGTTGTTTGGCGGATGGGGCTGGTTTTTCTGTATTTTCCGTTGTAACTTATACTTTGTGTTTTTAAAGTACGTTGGTGGCATACACAACCTTATCAGTTGATGTTTTGGGGGTGCAAACTGCAACTGTTTGGGAGCATATGTTCATCAACATCAGTGGTGGATAAGTCTGGCACAGCAAAATGAAGAAAAGAGGAACTGAATGGTTTCTTGTTTCATCATCAGGATTTTACACAATGTAACCTTTACTTGTTCAAAAAGGTATGGATACAAAGTAGTACTTTTGAATGTTTACAAAGGCGGTCCTTAATCCCTCCCCCTCCATTTTTGAA | |||||||||
gi|13369859|gb|BG451073.1|BG451073 NF097H02DT1F1026 Drought Medicago truncatula cDNA clone NF097H02DT 5', mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GAACGGCATCTGTCACAGGCAAGTAAAGCTATTGGCCAAGTCTCTCACTCAAGAAAGGATTGGGAGCATGGACGGTTGTTCTCTTTACAAGATCAGATTGATCATAAAATTGATTTTATCAAAGAAGAACTGCAAAATATCGAGATTCCTATAATACTGGTTGGGCACTCTATAGGTTCGTACATATCTATTGAAATGTTCAAGAAGACTCTAGAGAAGGTGAATTATTGTGTTGGACTTTATCCGTTTTTGACACTAAACCCACACTCAACAACACAGTTAATTATTGCAAAAATTGCACAATACCAATTTGTAGCTGCTGCTCTCAGCTACCTAACAGCATCATTAGGATTTTTACCAGTCAAGGCTTTGAGGTTTATTGTCGGAAAATCTCTCGGGAAGTCATGGTCCGCCAATGCAGTTGAGGCTGCATGCTCTCACTTGTCACAGTACCATACCATGCGAAACGTTCTCTATATGGCCATGTCTGAGTTTAAAAAGTTAGCCGGAGGCACCAGATTGGACATTTTTAAGAGAAAGGAAGGATCAATGTGCATTTTTATTTTGGTGTTGGNGATCATTGGGGCCCGCTTCATTGCTTGAANAGATATCAAACCNNGTTCCNGGGTNTTGCT | |||||||||
gi|55443492|gb|AJ845705.1|AJ845705 AJ845705 MtSNF Medicago truncatula cDNA clone MtNF09C03N1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTGCCTGAACTGATGAACTTTCTGGGACACCCTCAGGCCACATGGGAACCACAACATACACAGTGAATCTTTCCCCAGCTTCAATCTTGCTAACAATCTTAAGTGAAAGCTCTTTTGGGATCAGATGCAAAGCACCAATGTCTTCAGGCTTAATACCATCAGTACTCCACGCATAGCAACTTCCAAGGAAATATTGATTTTCAATGTAGATGAAATTCTTTGCGCGTCGAATAGCATTGATATAAGCATCTTGAATACTCCTATCTATTTTGTTATCCTTCCCACTAATAAGCCCAGCTTTAGCAGCATCATCAGGAGTCTCGGGGAACCCGAAAGCTGCTCCACCGTCAGTAGATCTAAATAGCTGAACATTCCACGTCTCTTGATCATCAGGGAAAGTTACCGGGGATGGGGTAATAATGGCATCTTCAAGCTCTCTCAGAGGAACAAGCAAGTCCTTTCCACCTTGCTTCCTCCATCTCTGCTCAAAGTTAAACAAAACATCCCAAGCAATGGGACCTTCAAGCCTTGAGTGGATATCATGCCAAGGTTCCCTAGGACCACCTTTTTCTATTGAAGCACCAGGAAAGTTAGGCTGATGAAAATCATCATGATGTGCTGTGTCCAGAGTTCGGAAAAGTGAATGAAACGGAGTATCATATCTTCCATCACAGAGATCAATGCCTCCTACAAAACTCACAATTCTTCGTTTATTTAATCCCACTTCATTTGGCAACTCACTGTCCACCACCAAAATTTTCTGATGATGA | |||||||||
gi|13602943|gb|BG587879.1|BG587879 EST489654 KV3 Medicago truncatula cDNA clone pKV3-13M16 5' end, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTATGTTCTTACATAATGTCTTGAATTTATTACACTTAAATTATCAAAGCTCATTAGGATTCTAACCAATACGTTTCTCTCTTTCCGGAAATCAGGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCTGTGACTAACTTCGAGCCAAGTACATATGAAAATGAGATGAAACCGGGAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTGGGCATGGCGACTCCAGGACATGAACCCAAAGAAAACAAAGGATATTGTCAATTTCAGACCGTCCCTTCTTACAACATGCATCCTGGAAGGAATTTAAAGATGGAGACTAATGTTAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGCTGGTTGTAACTGAACAGCGTCCTCCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATCAGCAGGAAAGGGCAGAGAGAATTGGCATTGATCCTTCAAAAGGACACCCCAACTGGGGGTGGCAAGGGCATAATCAAGGCACTGTTTCCCCAGTACCACAATTCTCTTCTGCAGCATCATCAGGATTCTCCATTTCAGCTACCTTTCCACCAAATGCAATCTTTCAAACACAACCAATCAACTCAATTCCCCAGTCACTCTGTTTCACTCCTGGTAGCAATGCATCATCTCAATACTATTACCAGGTTAAGTCCTCACAGGCACCACCATAGCCTATATTCTGTATTTGTAATAATAATACAAGATATATGAATGGCATGACGCAACAAGCTTTTGCGTTAAAACTCAATTGTATAATTCAGTTAGGATTTGA | |||||||||
gi|13367043|gb|BG448262.1|BG448262 NF069C06EC1F1039 Elicited cell culture Medicago truncatula cDNA clone NF069C06EC 5', mRNA seq AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GTAACTAAGAATTTCATTTTCCACCAAAAAGAAATTAAATTGAGCTAATAATTTCCATTATATATTANACTCAACATTCCATTTTTTTCTTCAACTAATCCTAACCGAATCGAATCAATCGCAAGAAGAAGATGAAACCAGCTTGTTCATTGTTGTTTTTGTTTCTGTGTTTCTCATGTGTATTTTGTTTCATTCCACCTCGTACGCTACTTCTTGACAAATTGTCTGAAGGAAGATTCCTCAGCACTGATGTCATATGGTTCAATCAAACTCTCGATCACTTTTNTCCATATGATCACCGTCAATTCCGGCAACGTTACTATGAATTCCTAGACTATTTCCGGGCTCCGGATGGACCAATTTTCTTGGTGATAGGTGGTGAAGCAACATGCAATGGGATAGTAAATGACTATATTGGTGTACTGGCAAAGAAGTTCGGAGCAGCTGTGGTTTCTCTTGAACATCGCTATTATGGAGAAAGTACCCCATTTGATACTTTCTCGACGGAAAATTTGAAATATCTTTCATCCAAGCAGGCACTCTTTGATTTGGCTGTTTTTCGCCAGTATTATCAGGATTCTTTAAATGCAAAGCTGAATANATCAGGAGTTGAAAATCCATGGTTCTTTTTCG | |||||||||
gi|7643303|gb|AW736449.1|AW736449 EST332463 KV3 Medicago truncatula cDNA clone pKV3-13M16, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): ATACATAAATGATGTTCTTACATAATGTCTTGAATTTATTACACTTAAATTATCAAAGCTCATTAAGAGTCTAACGCAATACGTTTCTCTCTTTCCGGAAATCAAGGCTTATGACAAAGCAGCTCTAAAATGCAATGGAAGAGAGGCTGTGACTAACTTCGAGCCAAGTACATATGAAAATGAGATGAAACCGGGAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTTAATTTGGGCATGGCGACTCCAGGACATGAACCCAAAGAAAACAAAGGATATTGTCAATTTCAGACCGTCCCTTCTTACAACATGCATCCTGGAAGGAATTTAAAGATGGAGACTAATGTTAATTCAGTTATTGGTGACCCGTCTTTGAAAAAGCTGGTTGTAACTGAACAGCGTCCTCCCATGTGGAATGCCACGTTTTCTAGTTTCTTTCCCAATCAGCAGGAAAGGGCAGAGAGAATTGGCATTGATCCTTCAAAAGGACACCCCAACTGGGGGTGGCAAGGGCATAATCAAAGCACTGTTTCCCCANTACCACAATTCTCTTCTGCAGCATCATCAGGATTCTCCATTTCAGCTACCTTTCCACCAAATGGCAATCTTTCAAACA | |||||||||
gi|55444137|gb|AJ846041.1|AJ846041 AJ846041 MtSC4 Medicago truncatula cDNA clone MtC402L15N1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): AATGTGAGATCTTCCTGTTGCATCGATATGAGATCGGACGGCTTCAAGAAGACGGAGAGCACCAGTAGCAACAACATCTGCAGTGTAATCAGGAATCTCAAACGAAACCGCGACATGAGACTGTGCGGCGAGGTTGTAAACTTCGTCAGGGAGGATAGTGTCGAGCCAGCGACGGAGAGCGGAAGCGTCGGAGAGATCGGCATAGTGAAGCTTCATATGAGCTTTGTGAGCGTCGTGTGGATCGACATAGATGTGATCAATTCGTTGTGTGTTGAAGTTTGACGAACGACGAATTAGGTCGTGGACGGAGTAGCCTTTGTTGAGGAGGAATTCTGTTAGGTATGATCCGTCTTGGCCTGTGATTCCGGTGATTAATGCGACTTTCCGCGGTGGTGGAGTGGTGTCGCCGTTTGTTGTTGATGGTGTTGGGNGTTTTGGGTGATGAATCTGCCATTGTTGTTTGAGAGAAGAAAGTTTTTAATATTGATGATTCCCCGCGTACCTCGGCC | |||||||||
gi|13781841|gb|BG646729.1|BG646729 EST508348 HOGA Medicago truncatula cDNA clone pHOGA-9L13 5' end, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CCTTCTTCCATTTCCAGGACAAGGTTTAGTGCAAAGTGCTTGAACGAGAAAATGAATGAAGAAAATAATTTGCTTTCCAAGGATAGAAAGCGTGCTAATTTTCGATTATGCAGTTTGTCAAATTATACATCTGAAATACTGGAGATACAAGCTGATGCTCCAAGTTTGCATGTTCTCTTTGTTCCTGGAAACCCAGGTGTTATTTTATTCTACAAGGACTTTGTGGAATTTCTGTATGAACTTCTTGGGGGAACGGCATCTGTCACAGCTATTGGCCAAGTCTCTCACTCAAGAAAGGATTGGGAGCATGGACGGTTGTTCTCTTTACAAGATCAGATTGATCATAAAATTGATTTTATCAAAGAAGAACTGCAAAATATCGAGATTCCTATAATACTGGTTGGGCACTCTATAGGTTCGTACATATCTATTGAAATGTTCAAGAAGACTCTAGAGAAGGTGAATTATTGTGTTGGACTTTATCCGTTTTTGACACTAAACCCACACTCAACAACACAGTTAATTATTGCAAAAATTGCACAATACCAATTTGTAGCTGCTGCTCTCAGCTACCTAACAGCATCATTAGGATTTTTACCAGTCAAGGCTCTTGAGGTTTATTGTCGGAAAATCTCTCGGG | |||||||||
gi|161106264|gb|EY474907.1|EY474907 METAA54TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GGTTGATGATGATGACCATCAACCTTCAGTTCATTTCAGTTATAAGTCCCTAACAAGAGCTAGTAAAAATAAGCTTCAGGAATTACTACAGCAATGGTCCCAATGGCATGCTAAAAATGTTTCCTCATCAAATGATCCTAGTGAGGTGTTGGAATCTGGTGAGGAGACATTTTTTCCTGCTATATGTGTTGGACATGAATCAAAATCTTCCGTGTCGTTCTGGATGGAGAACCAGTCAATGAATGATAGAAACAAAGATGTTAGTCCAATAGATGGTAATTCTGTTCCTCTATATGATCGTGGATATGCTTTGGGATTGACTTCAGCTGATGGTTCAAATAATGCGGATGATGGTCTGAAAATCATAGACGCACCTTCCCGATGTTTCAATTGCGGTTCATACAGTCATGCTTTGAGAGAATGTCCAAGGCCTCGTGATAACGTTGCTGTCAATAATGCTCGCAAGCAACTCAAATCCCAACGGAACCAGAGTTCTTCTTCCCGTAATCCTACTCGGTATTATCAGGATTCTTCTGCTGGAAAGTATGCTGGTTTGAGGCCAGGTGCTCTTGATGATGCAACTCGTCAGCTCTTGGGCTTAGGGGAGCTTGACCCACCTCCGTGGCTTAACAGAATGAGAGAACTAGGATACCCACCAGGATATCTTGATGAGGATGAGGAGGATCAACCTTCTGGCATAACAATATTCACTGATAAGGACATGGCAGACAAGAGGATGGGGAAATTATCGGAGCAGATTCT | |||||||||
gi|209561059|gb|GE343730.1|GE343730 MEUA459TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GGGGATTACTCGACCAAGAACACTCTCACTCTCTTCCGCTTTTTCCTTCTTCCATTTCCAGGACAAGGTTTAGTGCAAAGTGCTTGAACAAGAAAATGAATGAAGAAAATAATTTGCTTTCCAAGGATAGAAAGCGTGCTAATTTTCGATTATGCAGTTTGTCAAATTATACATCTGAAATACTGGAGATACAAGCTGATGCTCCAAGTTTGCATGTTCTCTTTGTTCCTGGAAACCCAGGTGTTATTTTATTCTACAAGGACTTTGTGGAATTTCTGTATGAACTTCTTGGGGGAACGGCATCTGTCACAGCTATTGGCCAAGTCTCTCACTCAAGAAAGGATTGGGAGCATGGACGGTTGTTCTCTTTACAAGATCAGATTGATCATAAAATTGATTTTATCAAAGAAGAACTGCAAAATATCGAGATTCCTATAATACTGGTTGGGCACTCTATAGGTTCGTACATATCTATTGAAATGTTCAAGAAGACTCTAGAGAAGGTGAATTATTGTGTTGGACTTTATCCGTTTTTGACACTAAACCCACACTCAACAACACAGTTAATTATTGCAAAAATTGCACAATACCAATTTGTAGCTGCTGCTCTCAGCTACCTAACAGCATCATTAGGATTTTTACCAGT | |||||||||
gi|10704197|gb|BF003922.1|BF003922 EST432420 KV1 Medicago truncatula cDNA clone pKV1-14G3, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): AAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCCAAAATAATGGAAGGGAAGCAATGACTAATTTTGAGGCCAGTACATATGAAGGAGAGATGAAATCTGCAGCCATCAATGAGGGCGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCCACGCCAGGGCCTAGTCCCAGAGAAAATTGGGGGCAACTTCACTTCCCCTCATCTGTCCCTTACACTATGCAAGCTGGAAGAAGTTCAAAGATGGAAACCAATGTTTCAGGAATCGGTGATCCATCTTTGAAAAGGCTATTAGCAACTGAAGAGCGTCATTCTTTATGGAATGGCATGTATCCCGCTTTCTTTTCCAATGAGGAAAGAGCAGATAGCATCAACAAAGCTCCTCCAAAAGGACTCCCCAATTGGGCGTGGCAACCTCATGGCCTTGTCACTGCTAGCCCAGTGCCACCGGTCTCTGCAGCAGCAGCAGCATCATCAGGATTCTCCATTAATTCAGCTCCCATTCCATCGACTCGCATGTTCCCACCAAGATCTATGAACTCAATTCCCCAGAGTCTCTATTTTACTTCGCCCAATGCACCTAACGGCAACAGATCTCCATACTATTATC | |||||||||