| mature miRNA: AGGCCTAGATTACATTGGAC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|20294593|gb|BQ157534.1|BQ157534 NF105H09IR1F1080 Irradiated Medicago truncatula cDNA clone NF105H09IR 5', mRNA sequence AGGCCTAGATTACATTGGAC EST sequence (targeted fragment marked with yellow): AAGGTTGAGATAGAAGCTGAATTTTCTTTCTTCCTTTCATATACACAATGAGATCAATGCAATCTAGGTCTAACCTTGATTGCTTTCTTCACCATACAACACCTATTGTACCATCTAAGTTTCTACAAAAGCATGAGATTAGAAACCTTAACCGTTTATGGCATCCGTGTGATAGAGAAACAGTTGAATATTTCACTCTGAGTGATCTTTGGAATTGTTTCAATGAATGGAGTGCCTATGGAGTTGGAGTTCCAATCAACTTTAAAAATGAGGAGACACTTGTCCAATACTATGTTCCTTACCTCTCTGCAATACAAATATTTACAACCAATAATTTCAGAGAAGAGATTGATTCTGGTAGTGAGACAAGGGATTCGTTCAGCGATTCTTACAGCGACGATAGCGAGTGTGATAAGCTATGGACATCATCAGAAGAAGGAGCATCTGAGCAAGATAGTCTCTGGCATATGAATGATCGATTGGGTCATCTCTATTTCCAGTATTTTGAAAAATCAACTCCATATGGAAGAGTTCCTCTAATTGATAAGATTAATGGGTTAGCAGAAAGATACCCAGGGTTGATGTCACTTAAAAGTGTTGATCTTTCACCAGCAAGTTGGATGGCAGTTGCTTGGTACCCAATATATCATATTCCCATGGGAAGAACAATTAAAGATC | |||||||||
gi|9689102|gb|AL389351.1|AL389351 MtBC54C11R1 MtBC Medicago truncatula cDNA clone MtBC54C11 T7, mRNA sequence AGGCCTAGATTACATTGGAC EST sequence (targeted fragment marked with yellow): CTCCGAGGTAAGAGAGTCAGAGATCTACGGAAGAAGAGAAAAAAATATTGTCCACATTAAAAAATGCAGATTCTTAGAAGAAACAAATTGTGTTGGGATGTGTATTAATCTCTGCAAAATGCCATCTCAATTGTTCATAAAGGACTCGTTTGGTATGCCAGTCAACATGGTCCCAAATTTTGATGACATGAGTTGTGAGATGATATTCGGCCAGGAACCCCCAGCATCAACTGATGATCCAGCACTCAAGCAACCCTGCTATAAACTTTGCAAGGCTAAGAAAAACCATGCAACTCAGTGTCTTAGTTAATGCAGCAGGCTTTCAGGTCAGCTGGGGTGGAACAAATGTGTCCTCCCACCTTTGTGTGCTACCAAAGGAAAGAACAAGTTCAATGCAATCTAAGCCAATGATTTTCTTCTTAAGTGGATTTTCATCACTTCATTAGTTTTAAAGTTCATAAAGCGCTCAAGTATTTTTAGTGTCAAAGGAATTGTTTACCACTATCAATTATATAATGGTACATCAAAAAAAAGAAAATAACGTCGAGGGGGCCC | |||||||||
gi|27409706|gb|CA922776.1|CA922776 EST640494 MTUS Medicago truncatula cDNA clone MTUS-58B7, mRNA sequence AGGCCTAGATTACATTGGAC EST sequence (targeted fragment marked with yellow): AACAAATGAAAATTATCCTTACTTCTTATTCATAAAATTGAGCATCTTAAATGAAGAAAAAAAATTAGATGTACGAGTTGGTAGAAGCATATCTGAATTACAAAATAGAATATATGCCTATTACAATACTAATGTTTAGGAATGAAGTGAAAATTGAAACCCTCTAACAAAACACTTCAACCACATACAAGCAAGATCAAGTGACAAAAAAAAAGACTTTAAAAAAGGGGTAAATTTTGGTGTATACAAATACGACCTTACGTGTCAACACCATCTGCTGCTGCAGCAGGATGCAAAGGTCTAACAGTATCAGGACAATCTGCTCTTGGTCCAGCAAGGGAGTAATAAGCAAGAATATGAGCTGGATGCTCAATAACAACAGGCCGCCGATCCTGTTGATTATTAACAACCATGCGTCTGGAAGGAATAACCTCAATATTCCAATAGGGTCGTGCCATTGCCAAAAGATCGTGCCCAGAAGCTGATGCTCCATACCCTTGAACCCAAAGATACCTCAAAGATGTTAACCTAGTTGCAGCAACAGCTAGTGCATGCTCACTGAAAAATGAACACCCTCTCATTTCGAGTTTCTGAAGACTCGGACAACCTTTGGAGAATTCCAAGAGCCCTGCATCAGTTTCGCCGACATAACCGAGAATATCCATCTCACGTTTGGACTGTATTTTCCTATGTAACCTAGGCCTACATCGGTTAAACCACCAGGTCTCAGGTATAGAGCAAATCTTCTAAGCTTTTTGCAGCCTGTCAGTAGAGCCCTCACTCCATT | |||||||||
gi|260524072|gb|GT144708.1|GT144708 METCV29TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence AGGCCTAGATTACATTGGAC EST sequence (targeted fragment marked with yellow): AAACAAATTGTGTTGGGATGTGTATTAATTTCTGCAAAATGCCAACTCAATTGTTCATAAAGGACTCGTTTGGTATGCCAGTCAACATGGTCCCAAATTTTGATGACATGAGTTGTGAGATGATATTCGGCCAGGAACCCCCAGCATCAACTGATGATCCAGCACTCAAGCAACCCTGCTATAAACTTTGCAAGGCTAAGAAAAACCATGCAACTCAGTGTCTTAGTTAATGCAGCAGGCTTTCAGGTCAGCTGGGGTGGAACAAATGTGTCCTCCCACCTTTGTGTACTACCAAAGGAAAGAACAAGTTCAATGCAATCTAAGCCAATGATTTTCTTCTTAAGTGGATTTTCATCACTTCATTAGTTTTAAAGTTCATAAAGCGCTCAAGTATTTTTAGTGTCAAAGGAATTGTTTACCACTATCAATTCATATAATGTTACATCACAAGATGATTATTTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|11902011|gb|BF637853.1|BF637853 NF043A11PL1F1083 Phosphate starved leaf Medicago truncatula cDNA clone NF043A11PL 5', mRNA se AGGCCTAGATTACATTGGAC EST sequence (targeted fragment marked with yellow): GCACGAGCATCTGTTTCGCCCAGCCCACGCTACCGAGCTCGAAGATATAGCAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGCACTTCCCCCGATCGATCTCGCCCCTCTCCTCGTGTAGAAAGGCATTCTTCGTACTCCCGGAGCAGGAGTCCAGTGAAATCTAGGTCTTCTGTAGAATCACCATCTCCAAGAAAAGCAAGTAGAGACAGGTCAGCTTCATCATCCAGAAGCCCAGATGGAAAGAGAGGCTTGGTCTCATACGGTGATGGTTCTCCTGACTCGGGCCAAAGGTGAAATTCTTGGTCCCCTATGGTTTTGGGTATTGTTGTCATCTTTTGTGAGCTTGGGGCTTCAATTTTGGAACTTCACCTTCTGCTTTGCTTAATGCTGGAATTTGTGGATGCCAATATACCATGTTTTATTTCTTTGTGGACAACAATGACATGTTAAAGATTCTAATGCTAGAATAAATAAGACAGTACTTGTGAAAAAAAAAAAAAAAAAA | |||||||||