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mature miRNA: ATATAGCATCGTGAGCAATCA
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|260527563|gb|GT141913.1|GT141913 METBX66TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence

ATATAGCATCGTGAGCAATCA
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TATATCGTAGCACTCGTTAGT

EST sequence (targeted fragment marked with yellow):
CTCTCATATCACTAGCTTAAGTAGTGATATATATGGATTCACTACAACAAGGTAGATCATAGCAAGAATCAACTACCAGATCAAATATCTGAGTGTATAGCTCAACCACTGGAGTTAATAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAACCACCTTTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGGTTTCTACAGAGTCAAATTGAGGCACTCAGCACCCCGTACTTGGACACTGCAGCATCAAAAAACATGATGAGGAATCAACATTCCGTACATGTTGAAAGAAATTCTGTATTTCCTGAAGACCCCGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGGGCGCTCCAATTCCAAACCAGAATGCAGAAGGTAATAAGGCAAAGGACTTGAGGAGTAGAGGGTTGTACTTGGTTCCAGTGTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAGTGGATTTTAATTAACACATGAAGCAAGGAAATTTGTGGATGATGATATAACATCATGAGCAGTCATTCTGTGGTAATGAAAAGGCTGATTGCTCACGATGCTATATATATGCATGCCATTAATTAATTATGGTTGATCATCAATAACTGGAATGTTTAAAATCCTCTAATCTAATTAAGTTTGGTTCAAAACTTCAATTGATATGTAAGTTTGGTTCTTCTAAATATGCTTTGTGCTTAGTTGAAATTATCCCTTCTTTTGTTTAAATGTATTATTATCATGAAAAAAAAAAAAAA