| mature miRNA: ATGAAGTATTTGGGGGAACTC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|151390164|gb|EV260042.1|EV260042 MTYE316TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGACGTGCAACCTGATTCTGATAGGGCTCGAAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAGCAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCAAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCAAAATCATCCTTCACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGTTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGGAAATGAGCGAAAACTGTCGATGGCTGCATTGTCTTATCCTTTTTTTTTTGAGACATCCACCCTTCACACCTGTTCATTTTACTCAATATATTTCTATCCTGTGTTGGGGTCCATTCATGGCCAAAAGCTAATTGATATTCCTCAATGAAGCGTTGGCAGATCCCTCAAATACTTCTTCAGATGCTCTTCCATGATTATCTAAGCTTGGTTCCATTCATGAAGAGTCTTTATCTTTAGGAATTTGTTTATACAAGAGAGATGTTAATTTGTAATAAATACACATTCTCTACAATTTTTCTGTTGGACAAAAGGGTAAAAACTGCAAAGTCTAATATGCTTTGCAAGTTTTATAACCCTTCCATTGCATCTGGGACCCCTCTAATAGTGGGTGGCTCCGAATTTAGATTGAAGAAAAACATGAGACTGATGTGTATCAGTGAACAAGAATGTTTGGAGCCTCCTTAGGTTTTGGAGTTTTTGCAGCATCTATGAAGTTGTTGTACTCTTTTAAGATAATGCTGATTATGTAATTGATATTAAATGTGAT | |||||||||
gi|13380303|gb|BG456978.1|BG456978 NF098G08PL1F1066 Phosphate starved leaf Medicago truncatula cDNA clone NF098G08PL 5', mRNA se ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTCCGCTTTCGATACGATTTGCGAGCCTGGATCGCCGCAGGCAGATCATAATTGTAAATATCTGTACGATACTGGGTACGACCATCTGCACCAACAAAGGCCGTCAGGTAGTAGAGATTCACCGGAATCGACTGCCGAATATTGACGTAACGTGTATCACCCTGCTTCAGCGCATCAGAAATACGTTTGTCATTCCAGCCTGCATCCTGCAACAGCATATTCGCCAGATCGGAAGCTTTATTCACTCGTACACAGCCTGAGCTCAATGCGCGTGTATCACGCTTGAACAGATTGTGGTTCGGCGTGTCATGCAAATAAATGGCCTCTGAACTCGGCATATTGAATTTATAGCGCCCCAGCGAGTTCCGTGGGCCTGGAGCCTGCTGGAAGCGGAACGGTAAATTCGAGGCCGTGATTGTAGACCAGTCAACCTGCCATGGGTCAATCGCTTCTCTGCTGTTCCAGCCGCGCATCACCGTATAGCCATGGCTTTCGAGATATCCCCGGATCGTTGCGCACTTTTGGCAGAATATCTTTGCGTGCCAGAGTTGGAGGTACGTTCCACGGCGGGTTTACCACTACGTTGTTAAGGGCACTGCT | |||||||||
gi|13782493|gb|BG647381.1|BG647381 EST509000 HOGA Medicago truncatula cDNA clone pHOGA-16P23 5' end, mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AATAGAACATAACTCGCCGATGATTTCAAAGAACTTTCCGCAAACAGTGGATGAATCAGGAACATCGAATTCCTCGATCGTCAATGCAGACGGTGACGAAGACTCGTGTTCCACGCGCGATTTCACTTTGAGTTTCGATATTCTGAAAACGGAAGGTTCAAATTCAAACAACGTCGTAACAAAGGAGTTTTTCCCTGTGAAGTTGCAAGCTACGTCGTCGTCATTTTCGATGAAGAACGGTTCGGTTGATTTTTCGATTAATCAAAACGAAGAGATGAAGATTGTTCAAGCGCCACAGCAAGTGAAGAAGAGTAGAAGAGGACCTAGGTCTCGTAGTTCGCAATACAGAGGTGTTACGTTTTATCGCAGGACTGGTAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTTAGGGGAAGTTGGTGCTGACATAAATTTCAATTTGAATGATTACCGATGATGATCTTAAACAGACGAAGAATTTATCAAAAGAAGGAGTTCGTGCAAATACTTCGTCGACAAAGCAATGGTTTCTCAAGAGGGAGTTCGAAGTACAAAGGAGTAACACTGCACAAATGTGGGCCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGGCAAAAGTATATATATCCTTGGGTTATTCG | |||||||||
gi|161106755|gb|EY475131.1|EY475131 METAC94TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAAATTCGAGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGACGTGCAACCTGATTCTGATAGGGCTCGAAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAGCAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCAAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCAAAATCATCCTTCACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGTTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGGAAATGAGCGAAAACTGTCGATGGCTGCATTGTCTTATCCTTTTTTTTTTGAGACATCCACCCTTCACACCTGTTCATTTTACTCAATATATTTCTATCCTGTGTTGGGGTCCATTCATGGCCAAAAGCTAATTGATATTCCTCAATGAAGCGTTGGCAGATCCCTCAAATACTTCTTCGGATGCTCTTCCATGATTATCTAAGCTTGGTTCCATTCATGAAGAGTCTTTATCTTTAGGAATTTGTTTATACAAGAGAGATGTTAATTTGTAATAAATACACATTCTCTACAATTTTTCTGTTGGACAAAAGGGTAAAAGCTGCAAAGTCTAATATGCTTTGCAAGTTTTATAACCCTTCCATTGCATCTGGGACCCCTCTAATA | |||||||||
gi|20456092|gb|BQ255339.1|BQ255339 MTNAH95TKM KVKC Medicago truncatula cDNA clone pKVKC-8H11, mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): TAAAATGACAAGGGTCTCATACAGAAGAAAGCATCATTAAAACACTAAAGAAATCAAAACATAGAGGTGATTGGACGGCAGAGCATTCTGGTGATTTCTCTCCCTTCAATTCCAAAAGGGATAATTGGAGGTCTCCAATAACACCATGTACTAATAATAGTGCTAAAAACCATTTTTACAATAGTGGTAGTCACAATTTCAGTTCTAAATCTTTTACGCGGAATGTTCATGATGGAACTCCTAATTCAGAAGGATCAACGAGGACTTTTCATCATGGGTACTCAGCTTCTAGGTTTGGCAACTCGAGTAGTAATGGATTTGAGAGAAGTTACAACAACGGGTGGTAGCTTCTCCAGAAATCTAGTCTAGAATAGATTATATTCTTTTTTGACAACTCATTTGCAAGTTTTGAACTCATTCATGCACCCTTCTCATTTATTCTTTGTATCATTATGTTGTAATAATAAATTTATTTCATTGAACTTGGGGGGTCACCCAAAAACTTCATTT | |||||||||
gi|9668570|gb|AL368817.1|AL368817 MtBA27A02F1 MtBA Medicago truncatula cDNA clone MtBA27A02 T3, mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGATTAACTCCATCATCTCTCTTCTTGGGTTGTCCTAAATAATTCATACATTCAATTTCATCTACTAATTGTCCTTCCAATTTGTTTGACTAAACATAGATGAAAATACAGTCACCTCATTCACATTTTCTTTATTCATTATTGAATCCAAACCACATGCAGGATCTAAAATTAAACTGTAGATCCAAACAACTAAAAACTAAATCCACTTAATTGTAAACTTAAGCATCAACAGTGTCCTGTGATTCAGCAGAAGCCAAAATAAGCTCTGGTTCACTTGCAGATTCACATGTTCCATCAATTGCATTGTTCCTCCCCAATGCCTTCAATGCCAAATGTGCAGCTTTCTGTCCTGATATCATCATTGCCCCAAATGTTGGACCCATTCTTGGGGCAC | |||||||||
gi|151387950|gb|EV257821.1|EV257821 MTYDD17TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCATTTTCAAGAAGGAATGGCTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGACGTGCAACCTGATTCTGATAGGGCTCGAAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAGCAGCAGACCGAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCAAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTCTTGAATCAAAATCATCCTTCACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGTTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGGAAATGAGCGAAAACTGTCGATGGCTGCATTGTCTTATCCTTTTTTTTGAGACATCCACCCTTCACACCTGTTCATTTTACTCAATATATTTCTATCCTGTGTTGGGGTCCATTCATGGCCAAAAGCTATTTGATATTCCTCAATGAAGTGTTGGCAGATCCCTCAAATACTTCTTCAGATGCTCTTCCATGATTATCTAAGCTTGGTTCCATTCATGAAGAGTCTTTATCTTTAGGAATTTGTTTATACAAGAGAGATGTTAATTTGTAATAAATACACATTCTCTACAATTTTTCTGTTGGACAAAAGGGTAAAAACTGCAAAGTCTAATATGCTTTGCAAGTTTTATAACCCTTCCATTGCATCTGGGACCCCTCTAATAGTGGGTGGCTCCGAATTTAGATTGAAGAAAACATGAGACTGATGTGTATCAGTGAACAA | |||||||||
gi|11934291|gb|AW691785.2|AW691785 NF044B05ST1F1000 Developing stem Medicago truncatula cDNA clone NF044B05ST 5', mRNA sequence ATGAAGTATTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): TTAATCAATCATACACATAAATTGATCCCAATGCAAATTGAATGATGTTAGTGGTATTTATTAACCGATCATAAAGTTATTGTACAATATTAAGTACTAGTGTGACAAGAGAGTTCACCCAAACACTTCAACTATGAGAGATCAAAGAGTCCTTCATATTGAAGATAGTACTAGTCAAATAGAAAGGTCTAAGTGGGTTTTGGATTCTCCTAATCCACCACCTTTATGGAAGACAGCTATTTTCTTCATTGAAAGAGACCCTTTTGCCTCATGGAAACAAATTATGTTTCTCATCCAAGAACAAAAGTTTTCTTGCACTTGCTTACTCATTCTTGCAGAGTTTGTTTCCAATCCTTGTTTGGTTAAAAGATTACACTATCTCTAAATTTAAAGATGATCTTTTAGCTGGTTTAACTCTTGCAAG | |||||||||