| mature miRNA: ATGCATGTGCATGTGCATCTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9667762|gb|AL368009.1|AL368009 MtBA21F07R1 MtBA Medicago truncatula cDNA clone MtBA21F07 T7, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): ATCTCCATCACCTCCTCCATATCATCCCTACCTCTACAACTCACCCCCGCCTCCCATCTATTAAGCTTCCGGCTATTATTTGAAAAAATTTCAATGAATTATATTCAGCATTGTTGTGGTTAATTTGTATTCAATCTTTTGTTAATAAAAAAGTCTATGCTTTACAGTGAATTAAGAGCCTTATTTTGATTCAAATGCATCTGTGCATGCATGGTGTTAATTCATAAGTTTGTATTTATTTTTCTCCTTTAGTGTTTTTAAGAAAATATTTTTTTTGTAAAAAAAAAAAAA | |||||||||
gi|260527940|gb|GT142290.1|GT142290 METC209TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): TGTGGCAAGGATGATTATGGTGCATCCGGAGTCTATTCCTTTAAATCAGGTTCTTCCTGTTTTCATGAGAGTTCTTCCATTGAAAGAAGACCACGAGGAGTCTATGGCTGTCTATAGTTGCGTCTCTACTCTTGTATTCTCATCCAATCCACTGATCCATTTTCTTATCCCTGAATTAGTTAATATTTTTACTCAAGTGGCAGCATCACCTATTGAGACATCTGAAGTCAAAGCTTTAGTAGGCAGAGCCTTTTGTCATTTAATTTCATTATACGGGCAACAAATGCAACCCCTTTTGAGCAACCTCTCACCAGCACATGCACATGCATTATCGGCATTTTCCACAATGAGCTGACCATGCAAACAAAGAGCAATTGAAAATTTTATCCAATTCTTTGTTTTACCTATCAAGAATTTTTTGAAGAAATGTCATGTTATATAGTTTATGTGGAGCTGTTAATTATCAGGTTGCAGCCGTTCCTTTCAGTGCCTTCTGGATTTTTATTTTGGAGTCGCCGATTCTCTTCTTTTATTGATTTTAATTATTTCTCGTGTTATTATTTAGTTTTTTAAAGTAACATTCCTTTTCTTTTCCTCCGCATTATGAAATTTTGATGTTTTTGTCTTCACCAGTTTGGAGGGGTGAAAGTTGCGTCCTCGAGGTTTACGTGGAGAATCTGAACGTTTTAACCAAGTTATATGTGATATATTATCCAGTTTTGTGCAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|151388026|gb|EV257897.1|EV257897 MTYDE08TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): GATCCACATTTCGTAAACGACAACAGCGTCACACAAACGGTGCCACTCGGTGCTACCGCGCCGTCAAGCTGATTTCTTCCTATCCTAAAACGACATCGTATCGATCAATATCATCGACGATCCTCTTTCATCCCAATTACCAAACCCTAATTCAGAGAAAGTTTTTTTCTCCTTAATTTGAAGGCAAATGGCATCTTCTTCAGACTCATGGTTGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCGTCTGCTATAAGAAGGAAAATCACAATATTGGGGACCCGACTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGCCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTTTGCAACGACAAGTTATGAATGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTATTGAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAAGGGCGGTTGCTCATGCATGTGCATGCTATTAGCAGTGATTGGTATAGTGGGTTTGGTTCTGTCATATGGCTCTGGTCAATATTGTAGATATGAAAA | |||||||||
gi|9667131|gb|AL367378.1|AL367378 MtBA14F01R1 MtBA Medicago truncatula cDNA clone MtBA14F01 T7, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): CTACCTCTACAACTCACCCCCGCCTCCCATCTATTAAGCTTCCGGCTATTATTTGAAAAAATTTCAATGAATTATATTCAGCATTGTTGTGGTTAATTTGTATTCAATCTTTTGTTAATAAAAAAGTCTATGCTTTACAGTGAATTAAGAGCCTTATTTTGATTCAAATGCATCTGTGCATGCATGGTGTTAATCATAAGTTTGTATTTATTTTTCTCCTT | |||||||||
gi|151387783|gb|EV257654.1|EV257654 MTYDB01TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): ATTCCTTTAAATCAGGTTCTTCCTGTTTTCATGAGAGTTCTTCCATTGAAAGAAGACCACGAGGAGTCTATGGCTGTCTATAGTTGCGTCTCTACTCTTGTATTCTCATCCAATCCACTGATCCATTCTCTTATCCCTGAATTAGTTAATATTTTTGCTCAAGTGGCAGCATCACCTATTGAGACATCTGAAGTCAAAGCTCTAGTAGGCAGAGCCTTTTGTCATCTAATTTCATTATACGGGCAACAAATGCAACCCCTTCTGAGCAACCTCTCACCAGCACATGCACATGCATTATCAGCATTTTCCACAATGAGCTGACCATGCAAACAAAGAGCAATTGAAAATTTTATCCAATTCTTTGTTTTACCTATCAAGAATTTTTTGAAGAAATGTCATGTTATATAGTTTATGTGGAGCTGTTAATTATCAGGTTGCAGCCGTTCCTTTCAGTGCCTTCTGGATTTTTATTTTGGAGTCGCCGATTCTCTTCTTTTATTGATTTTAATTATTTCTCGTGTTATTATTTAGTTTTTTAAAGTAACATTCCTTTTCTTTTCCTCCGCATTATGAAATTTTGATGTTTTTGTTTTCACCAGTTT | |||||||||
gi|13780070|gb|BG644958.1|BG644958 EST506577 KV3 Medicago truncatula cDNA clone pKV3-38H14 5' end, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGAGAGAGAGAGTCGAGCCTGCCGGCGTAGTGCTCAAGGAGCACGGCCTGGGCATTCGTGACGGACGCATCGCGTTTATCGGCCCACGCGCCGCGGCCATGAAGCTCGCCGCGACCGAAGTGCGCGAACTGCCGGGCATGCTGCTCAGCCCCGGCCTGATCAACGCCCACGGCCACGCGGCCATGACGCTGTTTCGCGGCCTGGCCGACGACCTGCCGCTGATGACCTGGCTGGAAAACCACATCTGGCCCGCCGAGGCCAAGTGGGTCGACGAAGCCTTCGTGCGCGACGGCACCGACCTGGCGATCGCCGAGCAGATCAAAGGCGGTATCACGTGTTTCTCGGACATGTACTTCTTCCCGAAAGTCGCCAGTGAACGCGTGCACAACGCAGGCATCCGTGCGCAAATCGCCATCCCGATCCTGGATTTCCCGATTCCCGGTGCCGCTGACGCCGACGAGGCGATTCGCCAGGGCGTCGAGCTGTTCGGCGACCTCAAGCATCACCCACGGATCAAAATCACCTTCGGCCCCCACGCGCCGTACACCGTCTGCGATGAAAACCTGGAAAAAATCCGCATGATCGCCGAGGAGCTGGACGCCTCGATCCACATGCACGTGCATGAAACCGCCTTCGAAGTGCAGCAGTCCGTTGAACAGCACGGTGAACGCCCGCTGGCGCGGCTTGGCCGCCTGGGCTTACTGGGGCCGCGCTTTCAGGCCGTTCACATGAC | |||||||||
gi|33105537|gb|CF068878.1|CF068878 EST669599 MTUS Medicago truncatula cDNA clone MTUS-13E12, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): GGTTGGCAGTTGCATTTGCACATGCATTTGCTCTATTTGCTGCTGTGTCTTCCAGCATGCATGTATCTGGTGGTCATGTCAATCCAGCAGTGACATTTGGTGCTCTCATAGGTGGCAGGATCTCTGTCCTTCGTGCTGTCTACTATTGGATTGCTCAACTTCTAGGTGCTATTGTGGCTGCCCTCTTGCTTAGGCTTGTCACTAATAACATGAGACCAGGAGGGTTTCACCTGGCAAGGGGAATTGGTGTAGGACATGGACTTATACTTGAGATTATCATGACATTTGGACTAATGTACACAGTATATGCAACTGCAATTGATCCCAAAAGGGGCAGTATTGGAGCCATTGCACCTTTAGCAATTGGACTCATTGTTGGTGCAAATATCCTTGTTGGTGGTCCATTTGATGGAGCATGCATGAACCCTGCACTTGCTTTTGGCCCTTCTTTGGTGGGATGGAGATGGCACTACCACTGGATCTTCTGGGTTGGTCCATTCATCGGTGCAGCATTGGCAGCACTCATATATGAATATCTTGTGATCCCAACTGAGCCACCTCATGCACACCAGCCTCTTGCTCCTGAAGATTACTAGTTACCTACTTCTGTTTATCATTGTGTGTTTGTCATTAGTGTCTTGTTTGTTGTATCATTTCGTTTTTACGACTTTTTTTTGGT | |||||||||
gi|55447257|gb|AJ847758.1|AJ847758 AJ847758 MtSTA Medicago truncatula cDNA clone MtTA07O13S6, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): CTACAAACAAAACAAGCACAAGCACATGCACATGCATACGTGAAGGTATTCAATCAGATTTCCAGCAAAAAAAAAAACATATGCATTAATTCGCAGCATTTATTTCTATAATTGGGAAAGTAAGAAACATTTGATTAAATGTGTGTCCATTATTGGAATTTGAGGAAGATAAGAACGAAGGAATGAACGTTACCGTGAAGAAGTGTCAATGATTTTGATCGGGACACCATCACAATGTAGAAATCGAGGCGCGCCGTGAACGAGGCTGGTTTTACCGGTTCCACTGTCTCCGGCGACAACCACATGAACTACGTCACCACCGCGTCTCACTCCCACCATTGAAGAAGAAACCCTCCCTCTGTGTGTGTGATTGTTTTGTTTGGCGAATCCAAGGAATTGGGGGAAAAAAACCCCGCTAACTCTAAAGT | |||||||||
gi|83664946|gb|DW015354.1|DW015354 EST1224315 MTY Medicago truncatula cDNA clone MTYA407, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): CGGCCGGGGAGTTTCATCCACATTTCGTAAACGACAACAGCGTCACACAAACGGTGCCACTCGGTGCTACCGCGCCGTCAAGCTGATTTCTTCCTATCCTAAAACGACATCGTATCGATCAATATCATCGACGATCCTCTTTCATCCCAATTACCAAACCCTAATTCAGAGAAAGTTTTTTTCTCCTTAATTTGAAGGCAAATGGCATCTTCTTCAGACTCATGGTTGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCGTCTGCTATAAGAAGGAAAATCACAATATTGGGGACCCGACTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGCCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTTTGCAACGACAAGTTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTATTGAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAAGGGCGGTTGCTCATGCATGTGCATGCTATTAGCAGTGATTGG | |||||||||
gi|10706354|gb|BF006079.1|BF006079 EST434577 DSLC Medicago truncatula cDNA clone pDSLC-39H5, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): TCCCTGTAAAGTCTGAGAAGGAGATGAATCGCCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTTTGCAACGACAAGTTATGAAAGAACAAGATGAGGGCCTTGAGAAATTTGAGGAGACTGTATTGAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAGGGCGGTTGCTCATGCATGTGCATGCTATTATCAGTGATTGGTATAGTGGGTTTGGTTCTTGTCATATGGCTTCTGGTCAAATATTTGTAGATATGAAAATACCCAACTCACCAAACTTCTCCCCTTGTGTTTATGTTTCTGAATGTGCCTTGAAACATATCATATATATAACCGAGGTTCTTTGATTGTTTTTTGTACTTTGCCAATGATGGAATGTATTGAGGTCTTGAAAAGCTA | |||||||||
gi|30099318|gb|CB892150.1|CB892150 EST649119 KV3 Medicago truncatula cDNA clone KV3-53I16, mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): GAACAGCATATATTATTAACAATCAAGCACAAGAAGTGCTAAAGGTTTAAGAGAATTACAAAAGCCAAAGCTGGTTACAACGGCAAAACAAAACGCAAAAGCGCACAGGCCAACCAAAACCGCAAAACTGATAGAAAAAACAGCAGCAGTAATGCTGCAGAAAAACTAACAGAAAGCCAATAAACCAAAAACCAATAACTGACAGGCCCAAAATCTCATAGCAGCAACCAAAACAGTCCTCTCCACAAGGCACCAGCCATCACCTCCTATTCAAGCATTCTCTCGGATTCCAACACCATTGCAATATACCTCCATTATCTTGTCCAGATATCTTAACAGATATCTTGTCCAGATATCTCAGATTATTAAAGGTGTGAAGTAATGTAAAATGAAGTAGAATCATATGCATATGCATTGTTCATAAATAACATTGTAAATTTGTCTTCCTAATTGCAAGACATTCAACGGTATTCGGTTTTGTATCCGGTGATGTGTACCTTTTTTTCCAATTCATTGCGATGTCACCTTTCCATGATGTATCGAACAGCATGATTGGCTATCATATATACACCCAACACTGTCAAGCCCGCAGAGGCGCACTTATACCACCTAGTAAAATAATTTAGTCAATAAAAACCATGTAGGCAAAAACATTCTGTGCTTTTGTTCTTTACATACAACTACATTCATTTAGGGAGACCTTCGCTCGGCTCACGATGAAAGTACGTGTGGTGTCGGTAGAATTACGACTTTGGCA | |||||||||
gi|209568796|gb|GE350412.1|GE350412 MEUAO49TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence ATGCATGTGCATGTGCATCTG EST sequence (targeted fragment marked with yellow): TAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGCCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAACGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTTTGCAACGACAAGTTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTATTGAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAGGGCGGTTGCTCATGCATGTGCATGCTATTAGCAGTGATTGGTATAGTGGGTTTGGTTCTTGTCATATGGCTTCTGGTCAAATATTTGTAGATATGAAAATACCCAACTCACCAAACTTCTCCCCTTGTGTTTATGTTTCTGAATGTGCCTTGAAACATATCATATATATAACCGAGGTTCTTTGATTGTTTTTTGTACTTTGCCAATGATGGAATGTATTGAGGTCTTGAAAAGCTATGATATGTTGTAATCTTCAGAAAAAAAAAAAAAAAAAAA | |||||||||