| mature miRNA: ATGTGACCTTGTATATGATC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11912419|gb|BF647289.1|BF647289 NF016E11EC1F1086 Elicited cell culture Medicago truncatula cDNA clone NF016E11EC 5', mRNA seq ATGTGACCTTGTATATGATC EST sequence (targeted fragment marked with yellow): ACAAAATTTTTTATTAGGAACCATGTTCATGAGTGAAGTGAATCACCAAAGCATCAAAACCAACGGAATAAATATACATGTAGCAGAACAAGGAACAGGACCACTAGTTCTACTCCTTCATGGTTTCCCAGAAATATGGTATTCTTGGCGCCATCAACTAAACTATTTGGCCCAAAATGGTTATCATGCTGTTGCACCTGATCTAAGAGGATATGGTGACTCTGATTCTCCTATCAACTCCGATTCCTACACTCTTCACCACATCGTAGGTGACCTTATTGGTCTTCTTGATCATTTTGGTGAACATAAGGTATGTATGTCAAAACCAAATCTCTTGAGCCTCCAGGTTTTTTCATGTTGTAGATAGACCTCCAAATTCATGTTCAACGTGACATTTTCATGTTGCGCCAACACCTCTACGTCAATTTTATTGATTATTGCAAGGTCATATATGTTTGAGTCAGTAAAAACGAGGCCTTATACGTCTATCGCTTTAGGTCTTAATATAGGTAGGATCAACATAAATGTGTAGCTAGATATTTATTGAGATATGATTGTACACAATTTTAGTCCTTAAACTATCCTTTTTCCTAATTTATTCGCTCTATCTCTTTTGAATAAAGGCATATGTAGTAGGATCTGACTGGGGTGCAAACATTGGATGGCACCTAAGTCTATTTAG | |||||||||
gi|209560865|gb|GE343986.1|GE343986 MEUA757TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence ATGTGACCTTGTATATGATC EST sequence (targeted fragment marked with yellow): GGTAGCATATGATCTTCCAGCAACATTCCAGTATGTGCATGATCAAACTGGACAAAAACTGCATTATGTTGGTCACTCACAGGGAACTTTGGTTGCATTAGCTGCTTTTTCCAAAGATCAACAACTGGACAAGTTGAGATCAGCTGCCTTGCTTTGTCCAATTGCTTATGGTGGTCAGATGACCTCACCAGTGGCGAAAAATGCCGCCGACCATTTCATTGCAGAGTCACTGTACAAATTGGGAATTTTCGAATTTAGCATTAAAGAGGGATCTGTTGTGAAGTTTCTTAAGGACATGTGCAAGGGCACATCCATAGACTGCACCAATTTGTTTACATCTTTCACAGGTCCAAATTGCTGCGTAAACCCTTCGATAATGAATACTTTTTTGGATCATGAGCCTCAGCCAACAGCAACAAAGAACATGATCCATCTATCTCAGACGATCAGAGAAGGAACAATAGCAATGTTTGATTATGAAAACAACGATGAGAATACTAGACACTACGGACAATCCACTCCTCCAATATATGACATGACAAGGCT | |||||||||
gi|157984932|gb|EX533204.1|EX533204 MTGland_B046_2007-06-23/MtGland_B046_F05_019_1 Medicago truncatula A17 glandular trichome Me ATGTGACCTTGTATATGATC EST sequence (targeted fragment marked with yellow): TANGGCCGGGTGGCTATGTANTCATGTCTAGTTGCACTTGCACTGTATTCCAACCACTCAGGAATTTCGCTACCTGGATACACGTACATGCCTTGGTTGCGATCGTGATCATGATCAAGGTCGCATGTGGATATATGTTGGTGTGAAAAGTTCATCATGTTGATTTTAGCATTCAACTCAATAGCCTTGAGAGAAGGCTCGTTTATTTTAAGGCAATTCCAGAAGGTAACCCTTTTCCTCTTTTCCTGAAGTTGTTCACTAGCAGTTGAACGGAACTCTACATTCTCTAGTGACACACAACCACCAGCATCTAGTGTTTCAATCGACGGAGGAAGCTCTGGTAATGTTTGAAGCTTTCTGCAATGGTGTAAGTCTAGATGTCTCAGCCTTGTAAGGTTCTTGATGCTTTTAGGCAAGCTCTCAATGTGAGTGTGTCCTAGATGTAACTTTTCAAGTTTGGTTTGAAGTCCAATTGATGAGGGCACTTGTTTGATACTCGTGCGTTCTAAATTCAATTTCTTCATATTCTTTGAGGTCACTGAGAATTCCTTCAGTGGTGTACAATTGTAGAGGGAGAGATCACTAAGGGAGATTAATTGGGTATTGCTTTGAAGGCTTGTAAGGGAAATGCATCCACTCAGATCCAGTTTCTTAAGCTTTTTCAGAGAGAAAACAGATGGATGGACACTAGTCAACCCTACACAGAATTGGAGGTCCATTACTGCAAGACTTGTGGCCTTTGAAAGATCTGGTAGCTCTGTTAAAAGTGTGGATGAATGGAGTATAANGTCATTCAAATTCACAAGATCCTGTTCCATTTAGAATTAGCCAACACAAAACATGTGAACCAATTGAATCTAAATTTNNTTGCATGCTAATGCTGGAATATATATAGTTTAAATANGTTTTTAGTCGTTCGAAATATCATTTTTGGTCTCATANNNGTNCNTNNNTTNNAANTATGANTCAACTTNAGTCTTGTTNANNGCCNNTACNNNGTC | |||||||||
gi|7571901|gb|AW697139.1|AW697139 NF115E06ST1F1050 Developing stem Medicago truncatula cDNA clone NF115E06ST 5', mRNA sequence ATGTGACCTTGTATATGATC EST sequence (targeted fragment marked with yellow): CAGGTTTGTTCTTGAGTGGATCTCATACTCAACACCAACGCAGACCATATCAATCCACACAGCGAACAGTAAGCATAGCAAAGATGAGTACTCTCAATGGAGGAGCTGATCATGTGTTAGGAACAACTCATAAGAAGGAGGAATCACCCACTTTTCCATATATTCAAGAAACTGCGAGGAAGAATCCTTTCAATGTTCCTGAAAGCTATGTTAGAACTGAAGAACAAATGGAAAAACACCTTTATACGCCTCACCTTTCATCTCACCTCCCAATCATTGATTTTGGATTACTCTCAAATGGGAACAAAGAGGAGTTGTTAAAACTGGATTTTGCTTGCAAAGAGTGGGGTTACTTTCAGATAGTGAATCATGGCATGCAAATAGACCTGATGCAGAGAGTGAAGGATGCAGTAGCTGAGTTTTCCGAATTATCAATAAAAGAGAAGATCAAGTATGCAATGCCCCCAGATGATATGCAAGGTTACGGGCATACTTCAGTTGATTGGTCTGATTACCTAGTCTTGCTCGTTTACCCAACGCGGTTCAGGAAGCCTCAGTTTTGGCCTAAGGAATTGAAGGATACGATAGACGCATATTCAAATGAAATTAAACGCATTGGCGAAGAAGTTATCAATTCTCTGTCATTGC | |||||||||