| mature miRNA: ATGTGATTATGTGATAAGTGT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27407460|gb|CA920530.1|CA920530 EST638248 MTUS Medicago truncatula cDNA clone MTUS-29D3, mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): CGTAAGCATAGCTTTCCCTTTCAAGCCAAATGGAGCTTCTTCATCAGCTCACAATTAGGACTCTAATCAGATACATTTCATACTAAATGGAAGTCCCTTTTGCATTACAATTGCAATGAAGCAGGTACATGGTAGAACAAACTTCTCACATTATCACATAGCTAGCTGAATAGAGAGAAGTGTAAGTATTCGGTTGCCCTTAACAATTAATCACTCATATTTTACTTTGATACCATCAATGACACGCCATTTATATTATGATTTAAGTAACTAATTATCTAAAAGTATATTATTTGTCCATAAAAAATGAAGAACGAGTAGAATGTTCTGCCACCAATAGGTAGAAAAATCCCATTACACCAGTGTGTTCTTGGCTATTGTTGTAGTTAGACTCTAGAGTTAAAGTTTCACCATCAATAATCTTGATTGAACCTGGTTTAGGATAACATGTGGACATTCCTACAATGTATCCCACTTCATTTCCTGCTTCGCTTCCATTTCCATAACTTGGTTTGGAAGAACATATAACCCTCCCATCCTGTCCATATAGGGTGGATCCAATTCCACCTGAATGCTGATGTGCAACACCATAGATCACATATCCACCAGTTTGAAATGGGAGACTTGTCCTCTTCACATGAACACACCCATTTTCCCTCCTATGGTCTGTGCTGCAAGATTCACTTGATACTCAATCTGAAACAAAGAAATCCATGTTGCTCACTATGATACCCCACAATGGGCTAGTGGTACATTTTAGAGTTAAATCGAGATTGAGACAAA | |||||||||
gi|20284096|gb|BQ147037.1|BQ147037 NF030H04FL1F1043 Developing flower Medicago truncatula cDNA clone NF030H04FL 5', mRNA sequenc ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): ACGACTCACTCGCCTCACCCTAACGTCTGTATTATCTCGTCCTTGTTGTTAGATAAGCTAAGCTGCAGGAACCAAGCCATGGCCTCCAAGCTGCTTTTGCAGAGAAGGCTCTTCAGGTTCTTGCGACAGTCACAAGAATCCTTATACTCCTTTTCTTCTTCATCTTCCATTCAACGATCCTCGTTCCATTCTGCGAAACAAACAGAAATATTGGGTTTCTCAACTTCTTCTAGAAGCTTCTGCTCTCGAAAGTCCAGTCTTGTTGATGAATCTAATGCCCCCGCACCTATTGATTACACTTCTCTACTGCAGGAGGGTGAATTCCATAGACTGGCCGAGTCCACAATACATAGCCTTCAAGAGAAATTTGAGGACTATGGAGACTTTATCGACCTTGATGGATTTGACATAGACTATGCGGNGAGAAACTTANAAGATTGGTAGCAAGCAGCTAAAATTATTTTTTAGATAATATCCTACAACTTATGTATTTTAGAAGACAACACGGAAGCTATCTTGTTGTATGTGATTATTTCAAAATAATCACATAATCACATTGATAACTTGATAACCTTTTTTATCGCTGA | |||||||||
gi|8171981|gb|AW980447.1|AW980447 EST391600 GVN Medicago truncatula cDNA clone pGVN-30J6, mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): GCTCAAGGTTGCTTATATTATTATGATCATATGTCTTTTTCTGCTTCACGATGCAGCCTCAGATGATTATCTAAAATATATTTATCGATGCCAGAATGACGGAGATTGTGATCAGATATGTGCGACACATGGTATTTCAAAGTGCGTTGCGACTATGTGTTTCTGCAATTTGAATTTATAAATGTAATTTGGTTTCCTATAAACTTATAACAAGATATAGGGAGGAGAGTAAAAACGTCACTGGCATGAAGAACTGCAGATGAATTGTAATAAATAAAAATGTAATCATGTGAATTAAATAAGGATAACATCATGATTATCACATAATTATATTCATTCATGCATTTATAAGC | |||||||||
gi|27409777|gb|CA922847.1|CA922847 EST640565 MTUS Medicago truncatula cDNA clone MTUS-59B8, mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): TTACAAATGAAACTTCTTCCTTTGCAGTTATATAACAGTGATACAAAGTAAAATGAAAGGTAATGATTATGATAATCATAATTGTTGGTGGTATTGACCCACAAACAATAATTACATAATCATATGACTTTATTGCTTAACATCAACGTGTTAATGGGAAACATGAGTTGTGGAATCATCAACTGGGTGCCAAAATCTGTTGAAGAACCAATGAGAATCAGCCTCAACAGAGTAACCATCTTGATTCCTATGCCAGCTGTAGTGAGCATGTGTTCTGTTCTTTATGTCAAAAATGGCATGTCCAAAGCTGGCCTCTCTGTATGCTGAGTACTCTGGTTGTGGTTCTGTCATGTTGGTTGCTAAGCCTTCAAGGTTCCCTCCATCTCCAATGGTTATGTATACAGGAGCTGATTGATCTTTTATAGGAGTGCAAATACCATTTACAACATTATATGCAACATTGGACACACGTTCAGAACGTTCATAGGCGTGGACATGGCCAGCATACACGACATCAACCTTGTACTTAACAAACCATGGCTCATACATTACTCTCATTGATTCCCCTTCCATGTAATGATAATTGTAGCTATTATACCAAGGTGAATGCATGAGAACAATCAACCAAGGAGTTTCTGTCCTGTTAACTTTTGGTAGCTCCTGTTCAAGCCATTTGTATTGTGGTGTATATTTTCCATATGCTGAATATGAAGCCAACACAATGATGTGAGCTGAAGCTCTCTTGATAGATACCAAAAGGGCGAGGTACTTTGCGATGCTTTGTAAGGAGTACGGTATCGG | |||||||||
gi|11916094|gb|BF650964.1|BF650964 NF099A02EC1F1007 Elicited cell culture Medicago truncatula cDNA clone NF099A02EC 5', mRNA seq ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): CCTCGTGCCGACCTAAAAACACAAAAACAAAAAGCGATTATATTCTTCTTCTTCTTCTTCTCTCTTTTCATTCTCATAGAATCAACCCTTGCTTCCAAGATAAAACACTGNTCACATAATCACTTTTCTAACATTCTTGAATATTACCTTTTCCGCAAGTTTGAATTTGAAGATAAGAGCAATGGGTGATGGAAATTGCATAAGAACATTGAAGGAATTTTCGATACCGGATTATATACTTATACCGGGAACTGAGAACAGAGGTGTTACTCATTTACCTGCATGTCCTGTGGNTGTTTTCATTAACACCAAAAGTGGNGGTCAGCTTGGTGGAGAGCTTCTTGNTACCTATAGTTCACTTCTTAACCAAAATCAGGNTTATGATCTGGGGAGTACA | |||||||||
gi|11957574|gb|AW692947.2|AW692947 NF057E05ST1F1000 Developing stem Medicago truncatula cDNA clone NF057E05ST 5', mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): TATAAAAGTACTTATCCTTTTTCACAATTTTCAATATTGCTTCACTCTTTCAAGGTTTGTGGAATCTGTTTCTGTTTTCCCATTTTGATATCTTGCGATCGCTTGATAATGTATCCTGGTGGTTATACTGCTGAAATCACAAACTTAACCCCGAGAGCGACAGAGAATGATGTGCAGAACTTTTTTGGATACTGTGGTGTAATCGAGCGTGTTGATGTAATCAGGTCCAGTGATTATGAGTCTACTGCATATGTGACTTTTAGGGATGCTTATGCCCTGGAAACTGCATTGTTGCTGAATGGATCAATGATTTTGGACCGATGCATTTCTATTTCACGCTGGGAAACTTATACAGATGACAGCAATAACTGGAACAATCTTACTCCAAACCATGAAGACAGTTATTACATACTCACAAGATATGCACATGGATAAGTTTTGTTTCTTCCCCTGGAGAAGCACTGACT | |||||||||
gi|9055734|gb|BE239551.1|BE239551 EST403600 MHRP- Medicago truncatula cDNA clone pMHRP-28F5, mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): AATATTTATTATATTGTCAAATCTTATTCTATTAAATAATAAAATAAGACCTCTCAAATAAAATATCACACATCACATAATCATATATAAATCACATAAATCATCTTAAATCATATAAATCATCTTAAATCATCTTAATAAACTCTAAACTCAACAAAATAATTAAATAAATCAAAGTGAGCGTTACACTTGGGCTTTGACGGGTCGGGCCAAAAAGGCCCAGACGATAAACGGGCTCAAAAATATTTGTCCAAGCCCAGTCCTTTGCGGGTTTTCGGGCCAGCCCGATTACTTAAAGCTTTTAATTAAAAAATTACACTAAAAAAATATCAATCAATATTAAACTTTTCAAATTACCAATGTTAATTTGTCATGAGCCAAATATTACACATTAAAGTAGACATTGTTAGCAAATTATATTCAAATCCACATTAATACAATTGAAAAGAGCAAGGTAAAGTTACACACAATTTATATTTATACTGACCATGTTATTCTAAGTAACCAAGGGAGTGATAATTCATCTATTTATTTAGGCAGTACTTAGAATATGGAGTGATAATTCTTCAATTTATCTTTATAGCGTAGGAAATTTAATATTAAAAAATAGGTTTAATTGCATTTCTGGAATAATATATTTTAG | |||||||||
gi|161107377|gb|EY475617.1|EY475617 METAI34TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): GGATACAATTTTCTATTTGTTACATCCAAAGGAGAAGAAACATGACTGCAATTCTCAAGGTTGCTTATATTATTATGATCATATGTCTTTTTCTGCTTCACGATGCAGCCTCAGATGATTATCTAAAATATATTTATCGATGCCAGAATGACGGAGATTGTGATCAGATATGTGCGACACATGGTATTTCAAAGTGCGTTGCGACTATGTGTTTCTGCAATTTGAATTTATAAATGTAATTTGGTTTCCTATAAACTTATAACAAGATATAGGGAGGAGAGTAAAAACGTCACTGGCATGAAGAACTGCAGATGAATTGTAATAAATAAAAATGTAATCATGTGAATTAAATAAGGATAACATCATGATTATCACATAATTATATTCATTCATGCATTTATAAGCATACATGAGTCTCAAAAAAATAAAAAAATACATGAGTCTACTAGATACAATTCTAGGCATACAAATTACATTAACCTAATACATTTTTGTGTGGCTACAATGCCACTTAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|10699766|gb|BE999490.1|BE999490 EST431213 GVSN Medicago truncatula cDNA clone pGVSN-16L9, mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): CTGCTTCACGATGCAGCCTCAGATGATTATCTAAAATATATTTATCGATGCCAGAATGACGGAGATTGTGATCAGATATGTGCGACACATGGTATTTCAAAGTGCGTTGCGACTATGTGTTTCTGCAATTTGAATTTATAAATGTAATTTGGTTTCCTATAAACTTATAACAAGATATAGGGAGGAGAGTAAAAACGTCACTGGCATGAAGAACTGCAGATGAATTGTAATAAATAAAAATGTAATCATGTGAATTAAATAAGGATAACATCATGATTATCACATAATTATATTCATTCATGCATTTATAAGC | |||||||||
gi|20276394|gb|BQ140268.1|BQ140268 NF030G03PH1F1023 Phoma-infected Medicago truncatula cDNA clone NF030G03PH 5', mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): CAACAACCTAAAAACACAAAAACAAAAAGCGATTATATTCTTCTTCTTCTTCTTCTCTCTTTTCATTCTCATAGAATCAACCCTTGCTTCCAAGATAAAACACTGTTCACATAATCACTTTNNTAACATTCTTGAATATTACCTTTTCCGCANGTTTGAATTTGAAGATAAGAGCAATGGGTGATGGAAATTGCATAACAACATTGAAGGAATTTTCGATACCGGATTATATACTTATACCCGGGAACTGAGAACAGAGGTGTTACTCATTTACCTGCATGTCCTGTGGNTGNTTTCATTAACACCAAAAGTGGTGGTCACCTTGGTGGAGAGCTTCTTGTTACCTATAGTTC | |||||||||
gi|19108868|gb|BM779146.1|BM779146 EST589721 KV2 Medicago truncatula cDNA clone pKV2-51I21, mRNA sequence ATGTGATTATGTGATAAGTGT EST sequence (targeted fragment marked with yellow): TAGACTTAATCTCCACTAAACAGCTTTAGTTATTACTTTAATATTCCAGTCATCATTAGAAGCCATGGACATGGTAGTGAATTTTGATGGAACTGACTTTTTCAACAAGGGAATAATTTTACAACTGTGTTTGCAATAGTCAACTATCATATTCAAAAGCCATCAGAGCAATTATTTATTTTTGTTGACTTCGTTCGTATTCATCCTATACAAACCAAAAATAAAACAAGAAAACCATTTGTGCTTAAACTAATTACATAGTCATATATTTTAATATATCTACATGTTAATTATTTTCTAATGAGATGTTTGATTTCTTAATGCAGATTTGATCGAGATTTGAGGTGGAGAACAGGGGTTAAACTTGTTCCAGTTATCTGCGAAAGTGCAAACAATTTCAAATTAACAAAACAAGCCTTAGAAGAAGCATATGAAAAAGCCACAGAAGATAACATCAGAATTAAAGGTTTACTCATAACAAATCCCTCAAATCCATTAGGCACAGTTATGGACAGAAACACATTAAGAACCGTTGTAAATTTCATCAACGAAAAGCGTATTCACTTAATAAGCGATGAAATTTACGCTGCAACGGTTTTTAGCCACCCAAGTTTCATAAGCATAGCTGAAATATTAGAACATGACACAGACATTGAATGTGACCGTAACCTCGTTCACATAGTTTACAGTCTTTCAAAAGACATGGGATTCCCTGGTTTTAGAGTTGGTATAATATACTCCTATAATGATACCGTTGTAAATTGTGCACGAAAAATGTCAAGTTTTTGGATTAGTTTTCACACAGACACAATACTTGATGGCGAAAATGCTGTCTGATG | |||||||||