miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CACTTCAGATTGATGGTGTGT
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|148764725|gb|ES611419.1|ES611419 MTGland_A007_2007-04-03/MTGlandA007_D02_005_1 Medicago truncatula A17 glandular trichome Med

CACTTCAGATTGATGGTGTGT
|||.|||.||||| |..||||
GTGGAGTTTAACTTCTGCACA

EST sequence (targeted fragment marked with yellow):
TTACNGCCGGGGNNNCTGNTAATGAAGCACCGACCCATACACGGACATGTTCACACCGATAGTAATTTGAGAAAATGACGGAATTGGCTGTAATCACACGCGTCACTGTCGGACACAGATGTGCGCCATAAACCAAACACACCTTCCATCAAAAATATCGGTGCTACGATCGGTGCTATGACACCGTACACGTCTTCAATTTGAGGTGTTGTTACATAAAAGCCAACACCATATTCATGATAATTTTAATTCCAATTACAGCACAAAGACTTATTTTGAATACAATTATTGAGTTTTTAAGCTTTTAGGGTTCAGACAAGTGAAGCAAAAAACTGAAAGGGGGAAAAAAGTTTAAAAAACCTTTATTGGTTGAAAAGCTCAAAACTTGAGATGTGCCCAAAACTCCATTTTTGGAACAAAAGCGCTGCAAACAAAAGGGTCAATAAATCACTCGTTGTTCATAAAATAAGTAACCAAATTTAAAAATAAATAAATAAATAAAATGTACTACCGTTGGAAGGTGATGGTGGAAGAAAGAGCGATTAAGGAAAAAGGTACTTCGGAGAAGCCTCGCCATGGAATAGAAGCACAAAAATGGTTTCTTTATTTTGCTATTTGATTTGGTTGAAGTTGCATGGAGACATGTACCACGAATTTGAGTTTACTGGTCATTANNGTTTAACATTTATTTTCCCTCCATTTTTATTTTTCATTCTCGANGTCATTTTGTGTCNGGATATTTTTCATTCTAGTCCCNCNAAAAAAANACTTGANNGGNTTTANTGCATTGANAAATATTATTTANC



gi|89245912|gb|DY617699.1|DY617699 AC3851 NOLLY Medicago truncatula cDNA 5', mRNA sequence

CACTTCAGATTGATGGTGTGT
||||| ||||||| ||.|.||
GTGAAATCTAACTTCCGCGCA

EST sequence (targeted fragment marked with yellow):
GCAACTTCTCAAAGGAAGACAACACCATCTTTATGTTTATTATTACATTCTACTGCAAGAAAATAACTATAACAATCTACGAAGCACAAACACAGGCACGGGACGCGCCTTCAATCTAAAGTGTCAGTGCTACATAGATAGAGTGATTGATACATAGCCATTAAGACTCCAAAAAGGAATCCATTGCCTTTTTGTGACTTGCCGGTTTGCCATGCTATAACAAAAGCTTCTGATCCTTTGGAGAAAAACTTTAGACCAGTTTATGGCAGATAACCTTGATATGGACGATGAATTTGATGACTTGGAATATGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATGTACTAATTTGATCATTACCAGTACTTGAAATACAGCATGTTGAAAGGAGAGCATTCTTATTATTGGGCCTTATAGAGGAATATGTGGTGCCTGCATTTTCTGTAGATTGTAGTATGGATAATACAAAGAAGTGCATGTTAATTTTTATGTGTGCGTGCTTCTTGGAGGTTCCTACGTCTACATATTTACGATTATCGCCTTTGTAGAAGTGGGGTTGGATGTTTTCTTACATGCTGAAATGGTTGCTGGTTTAGGGAAGAAAATGATCGTTATACTTTACTCACTTCCTGGTGAATACTTGCTTAATATATTATATTTACATTTACATTAGGTGAAATCATATTTCATGTCGATACTTATATTATACACACCTACTCATGTAAACAGTAAATTTTATTAACACTTCCGTATTAGGGATGCATGTTTTAACACTTTTTTC



gi|157981862|gb|EX530134.1|EX530134 MtGland_A063_2007-07-13_1/MtGland_A063_D03_013_1 Medicago truncatula A17 glandular trichome

CACTTCAGATTGATGGTGTGT
||||||||||| | | |||||
GTGAAGTCTAAATTCAACACA

EST sequence (targeted fragment marked with yellow):
ACGGCCGGGGTCNNNTTGTGTTAGTCTGACACTTGGACACAACTTAAATCTGAAGTGTCTGCGCTATATAGCTCGTTTGTCTATGTATAGTTCAATATTTGTGGATTTAGAATAGAGTACACGTGTGTGTATGCTTGTATATCTGTCAATCTTGTCTTATGTAGAGGTGCCTCTTCACTTTATCATTTTCTTTTGTTATATATGTATATCTGTCAATCTTGTCTTAGTTTGATTTGTTTATGAAAAATTAACAATGAATTATTTCCAACAGAACGTTTGTGGAGTGAGAGACAATATACTTCAGGTAGGAATAGTAACTCAACTGCATTATCACGGTTGCNATACTTCAGATGTCTGTTGAATAGAAGAGGGGTTCCAGCTGCTCCTGTCACAAATTTTTATGCTAGAACTGCTCCTGATGGTCCAGGTTCATGCTTTGAGCAATGACTTTAGAATGCTTCTGCTGTCTAATAATTCTAGACAGTTGTTGAAAATATTTCTACTAAGCATGGCCGTCTAATGTTAGTGCTCTGGTGAATGGACTGTAATCATGTTATAATATAAGTTATTGTATTCAATAATAAGATTTCTTCATTTGTCTCTAACTAATTGCAAATTTAATGGACTTTGTGATGCTTAAGCTTATAGTACTCTATCATTCTATGTAGAAAGCTATTGGTAACATCATTTAATTGGAACCAAATATTGGTTTTCAAGACTTTTTTTCTTTCCNATTTTACTCTTCATTTAAACTTTTCTATTTANGATTTTATCAATCTTTACCTGATCAACAAATACCGGAGAAAGACATGGTTTTTGATAGAGCATTGTGACGTCGTTTGACATANTGAGATAAAGTTTGGTTGTTTATGTTGTTGTACCTAATCAAATAATTGAANTCNNTCNTACTTTNAAATTTNNANNACAANTTTNATCTNNTNCTANNTAANTTTTANTACANNNTAGTT



gi|148764824|gb|ES611518.1|ES611518 MTGland_A008_2007-04-03/MTGlandA008_E06_020_1 Medicago truncatula A17 glandular trichome Med

CACTTCAGATTGATGGTGTGT
||||||||||||| |..|||
GTGAAGTCTAACTTACGTACA

EST sequence (targeted fragment marked with yellow):
CNNNNNNNNNNNNNNTTACGGCCGGGGCCTCTTATTCTTTTGTGGACCAATGTTTGAGAACAAAATTCATTTGCTCTGTCTTAGGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGACCTGATATAGTGGAGCTTCTGCTGATTAAAGGCGCTGATCGGACATTAAAAAACAAGGTAATTGTCTATTGATTTCCTATATTAATCTATCAATGTAATAGAACCTTGCGTGGTAGATAATGTGGGTTGAATATAGATGCTTTTAATGGGTCATTGGTAAATATCAGTTGTCACTGATATTTAGCTATGAAGCACTGACNCAGACATTCAACGTTACACCGACACGTAGACATTGATAATAATTTANAAAATAGAAGTGATTGTATTGGTGTCATGTTGGACATCATACATGCATTCAATCTGAAGTGTTGGTGCTACACAAGTATTTANAAGATTTGTCCCGTCCTTAAGAACTGGTTATCTGATTTAAATGATAGGCTAAGAAATTGAGATACTTACTCGAGATTCTCTCTTTAAACAGGGACGTCTTAAAAGTTGTTAAAAACCATAGTCATTAAAAACCTATCAGTTGAAGAAAAACTTTCCGATTGTTATTTAGGAATCATTAGACTTTGCCAATCACTTGCTTCTTTGTTGAACTGTTACGAATCTAGTCACTAGTCCCATGCTTGGATCAAAAAATTAATAGTTTCATTAAAATATTGATCTTTAATAGACCGTGATGCATCGATTANCCNGNNTCAGTCCTTACCCANNAG



gi|157979967|gb|EX528239.1|EX528239 MTGland_A039_2007-06-29/MTGlandA039_B08_031_1 Medicago truncatula A17 glandular trichome Med

CACTTCAGATTGATGGTGTGT
|||||||||||.| |||||||
GTGAAGTCTAATTTCCACACA

EST sequence (targeted fragment marked with yellow):
CGGNNTTACGGCCGGGTTCTCNTTCATACTAGCTAATTGTTAAACTCTAAAAAAGACTAATTCTTTTTAAGATCTTCAAACAAAATAACCAAAGTATCACTAATGACTCATTATTTAGTTAATCCAACAATAAAACAGTAATTGTAGATTACCCAGATGCTTCATGGCCAAATATGCGAGGAAATATGGCCTGCATATAAAAACACCTTATGTTAGATGTTAGTTTCTTAATTCCATAAAATCTATGAAGTATTGACATAGACATCAGAGCGACAGTAACACCGAAACATTAACATCGATAATAATTTGAGAAAATTGAATGACCGAATGTAATAATATGTATTGTTGTCGTGTCGGTGACACACCTTTAATCTGAAGTGTCAGTGCTCCATAGTTAAACAAAATGTTGATTGGTATATACATTGTCTCAGATTAAAAAAGAAAATGATAATCTTATCCAATTACATCTCACAAACGACTAATTCTTGTATGATGACGGGACAATGTCTATATGAGCAACAAATTGGAAATTCATGACATTAAAAATAATAAAATAGGATGAAAAAAAAAGTAAAAAGGGCAGGATATGATGATATAATTTAATTTTGATACATTGTCAGCATATAAAATCTTACACTATTTATGTGTAACTTAAGATTTAAGAAATAGTTAAGATTAAAGTCCATATTCTTTTTTAACAATTTGACGATTATGATTGATTGACTGTAAAAAATCTTTGCATTGAAAGTGTATATCAATTAAATCTATAATGATTATGATAAAATAAGAAACTTACATGAGTTTCCCAAGCAGAAAGATCACTACGACAGAGAGAGGTGGAAACAACCTTAATCCTAATCTCNNATGGTTGAGGAGGACTGACTTCCACTTCCTCCNTCACCAATGCCTCTCCAGCTCCCCATGCTACTGCAGCTGTTTGTTTGTTTCATAAACNATGGACATAGTCATANTCNTACATACATACATACATACTTACNTATCAAANNNNATGGNANGANNNAA



gi|209565255|gb|GE349896.1|GE349896 MEUAH76TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||||||||| |..|| |
GTGAAGTCTAACTTCTGCAGA

EST sequence (targeted fragment marked with yellow):
GACCAAAGTACTCAGAATTGAACCTCATCATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGTAATCAAGAAGCAGTAGATATAGCACATCCTTATTGTGCAGGGAGCAATAGACAAGGATCCTTCCCAGCTTGTAAGAAACTTGTAGATTTATCTGTATCGCGAGGCTCTATCGACGATATAAGTGTTATGATCATCAAACTACAGAACTACGTTTGAAGTTTCATTAATACAAACACAGACGACTAACACGACACCAGTATAATTTAGTAAAATGAATGTAATTACATGTTCAGTGCCCGATATCAATGTATGTTGGACACCAGAGACGTCTTCAATCTGAAGTGTAGATGCTACATAAATTAGGATGATAGGATGCCTTCATTTCATTCTTTAACATTCTTCATTACAATTAGTCAGTAGATAGGGAATGTGATAATAGTTAACAGAAAGAAAGACGGTGCCCTAAAATAGAGTACCTAGATATTATTCTGTAAAAATAGCAGAAATTTGGTAAAATTTTGTAACCTATAGCTGAGGAGAGAATAGGATGTATAAAGTAACTTTTTTGTATAATGATCTTGATTTAATGATAAACATTTTTTTAGTACAAAAAAAAAAAAAAAAAA



gi|57493227|gb|CX524508.1|CX524508 s13dNF17G11AT086_448360 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence

CACTTCAGATTGATGGTGTGT
|||||||||||| ||..|||
ATGAAGTCTAACTTCCGTACA

EST sequence (targeted fragment marked with yellow):
CAATATTGAAATATACATTCATATTTATTCATGTGATTACTACATAAACACGTCCTTAAAGTGACACTTTTGTCACAACACTGCTTTGCAATTTAAATTACATTAACTTGGGTAAAATTTAAAAAGCAACAATATAATTTTATAAGGCACTAGAAATCAATAGAACATATAAATTAACTAAAGAATACCACCACTTTTGGGGTATATGTACTTGAAGAAGAAAAAAAACACACACTTGATTTGTTTTAAAAGTTTCCTTTTATGAAACACTAATACCGACACATAGATTTGAACACTAAAGATTAAACATGCCTTCAATCTGAAGTATATGTGCTATCCAGATTTTCGTTAATTGGCTCTCCTGCATTGCTTCCTAATCTCCCCATTTGATCCGGTAAGAGGCTTGTTATTTCCCATCTTAATCATTGCAATAGCAAAATCAGATTCAAATGCATTTTGATTATTGCTATAAGATTTAACCAATGAATCGGTGGACCCTCCATTGAAAAGCTCTTGATCAGAATGAAGGAGTCCCTTTTTGTTGATGAGATTCTTGTAGTATAAGTTATCAAAATGGTTTG



gi|161108329|gb|EY475663.1|EY475663 METAI81TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||||||||| |.|| |
GTGAAGTCTAACTTACGCAGA

EST sequence (targeted fragment marked with yellow):
GATAGCATTTTTTGTAATTTGTTTGTTACATTGGTGGTGTGTAAAAATGGTAATAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGACTTGGAAACAAGAGTCAATGACTTAGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCAACTTTGCAGAATGAAAATCAAATGCTGAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGAAGCAATGGTGGTTCCAACACTGCTGAATGAAATTAATGACAATCAAAACTTAGAGTAAATTAAAAAAAAGTGAATAAAAAAAAAGAGATGTTAAAAATTAGTTTTGATGATTCTTTCTAGGTGTGCATTTGGAATTTCTTGAAGGATGAACGCAAAACATGTTTTATCCTAAAACACCCTGTGTTTTGATACGTGAAGCACTAACATGAAAACGGGACATGTGATTGACGACTTTGACACGCAGACGCTAGTGATGTGAAAAAACATAAGTATTTAATGTAATCTCATGTATCAGTGTTTTACTCTAGACGCATTCAATCTGAAGTGTTAGTGCTACAAATGTAAACTTTCTCCATTCGAATTTAGGTAGTATGGAGGTGAGTTGCTGTCGGTTTTTGTAATAATTTCATCAAGGAACCCATTTGTTGAGGATATAAAGGGTAACTGATGAACCATTTGTGAAGTTATATCATACTAATGAATT



gi|11928484|gb|BE319234.2|BE319234 NF015E11RT1F1083 Developing root Medicago truncatula cDNA clone NF015E11RT 5', mRNA sequence

CACTTCAGATTGATGGTGTGT
|||||||||||.| |||||||
GTGAAGTCTAATTTCCACACA

EST sequence (targeted fragment marked with yellow):
GTTGGATGTTGTTGGTTTTGTGGATTGGTTTATGTCTGTAAAGTTTTTTTTTTTTGTTAAAATTGATATGCTAATTCTTGTAACATGTAAATAGGATGTTAAAGAAATAGTAATAGATATGAAAACTGAAAATTTTGTTTAAGAAGTTTTGTGTCTATTGAAACTGCTATAATCTATTAGCTATATATGAAACACAGACACAGATTAATAATCACATGTATGTATTCAGTGTCAGACACTCACGTGTGTTGGACACCAGACACACCTTTAATCTGAAGTGTCGTAGATTCATAGATTGAAATCCTCTGATTGGCTAATTTGCCAATGATTTTAAAGAAATAACATTGAAGTGATGAGTGATATAGGAAGCCTC



gi|209561478|gb|GE344869.1|GE344869 MEUAH76TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||||||||| |..|| |
GTGAAGTCTAACTTCTGCAGA

EST sequence (targeted fragment marked with yellow):
GGATCATTTCTCATTCAAACCAAAACCAAAAACAAAAGCTTCGGAATTCGCGGCACAGAACTTGGAAAAGAATGTGTTAGAAGAAGTAATCAGAAGAGATGAGAGTGATATTGAGGAAGCAGTGAAACATGGTTACCTCAAAACAGATTCAGATTTCTTAAAAGAAGATCTTAATGGTGGTTCTTGCTGTGTAACAGCATTAATTAGAAATGGCAACCTTGTTATGTCCAATGCCGGTGATTGTCGTGCTGTCATCAGCCATGGAGGTGCTGCTGAAGCCTTAACATCAGATCACAAACCTTCGAGGAAAGACGAAAAAGAACGGATTGAGACTCAGGGAGGATATGTCGATATGTGCCGCGGTGTTTGGAGAATCCAAGGATCTCTTGCTGTTTCAAGGAGCATTGGAGATAGACACATGAAACAATATGTGATAGCAGAACCTGAGACCAAAGTACTCAGAATTGAACCTCATCATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGTAATCAAGAAGCAGTAGATATAGCACATCCTTATTGTGCAGGGAGCAATAGACAAGGATCCTTCCCAGCTTGTAAGAAACTTGTAGATTTATCTGTATCGCGAGGCTCTATCGACGATATAAGTGTTATGATCATCAAACTACAGAACTACGTTTGAAGTTTCATTAATACAAACACAGACGACTAACACGACACCAGTATAATTTAGTAAAATGAATGTAATTACATGTTCAGTGCCCGATATCAATGTATGTTGGACACCAGAGACGTCTTCAATCTGAAGTGTAGATGCTACATA



gi|27408955|gb|CA922025.1|CA922025 EST639743 MTUS Medicago truncatula cDNA clone MTUS-47G4, mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||| ||||| |||||||
GTGAAGTGTAACTTCCACACA

EST sequence (targeted fragment marked with yellow):
TTGTATTAACATACATGATAGATGATAACAAAATGAAAGTACAGAAGGCCTTGATCTTTCATATGAAAGAAAAATACAAAAACATGTGACTAAATTCTTATAGGCAGTTTAGAGGGAGAACTTTGCCAAATTTTAGATTCAGATATTTCTCTGATTGATAAAGTATATCTAAATAGTTGCACAACTTGCACTCAATTTTTAACATAGACCAGTGCAAACCTCTGATTACCAATTAAGCATGTTTCAATAACTCCATCTTTCTTTACAGATCTATGAAGTGTCTCAATCTTCTATGTTGTGACAAACTAGGAAGCACTGACACGGAAACTGACACGTCGACACTGATAATAATTTGAAAAAGTGGAATAATTGAATGTAAACACATGTGTAAGTGTCAGTGTAGTGTGTCAATGTCAGACAGCAGACACACCTTCAATGTGAAGTGTCGGTGCTACATAGGTGGAAGAGAGCTACTGATTTGAAGAAAAACAACAAAAACAAAAAAAAAGAATATTGCAATACATAATTTAGAAAAGGGGACTTCATCTACCCTCGGACTTCACCAACTGTGAGAATACCCTACTCATAGAAACACCAGATAGATCATCAACGGTTGAAGCTTCAAATGGCACAGCAGAGGCAGAAGAAGAAACATTTGCGTCCTGGTTGAAATTGTTGACTTGTGGAGATAGTTCGCCAATCATATTTGTACTGTTTTCTTCAGGATCACCTTGAACCCACGGCCTCTTGAAAGTTGAAGAGCATATTCCAAATTTCCACAGACATCTCCC



gi|57492637|gb|CX523918.1|CX523918 s13dNF08E07AT051_447180 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||||||||| |||| |
GTGAAGTCTAACTTACACAGA

EST sequence (targeted fragment marked with yellow):
GCACGAGGCTAGTATTATTCATTCACTATTTTTTTTCGGCAAATACAAGATACTGGAGAAAAGAATACAAGACATTGAATTAAAGAACTGTATTGAAACTAAGAAATCAATAAAAGACTGGGGTCCTATGCGACACCAACACATACACAGACACCAACCCTACGCTCCAACACTAGTAATGAATTAAAAAATAAAAAGAATGAAAGTAATCACATGCGACGGTGCCCGGTGTCGGACACCGACACATTTTAGACACCAGACACATTCAATCTGAAGTGTCAGTGCTACGCAGCTTGTATCAATCTAATTTTGAAGAGTAGGATAATCATGTGATGGAGCAGCTGGTTGAGAATGATTTAGGACATCAGACAGAACAAGCAAGTTGAAAACTCCAGGTTTTGTCAACCAAGCAGTCAGCACTTCTCCAGGAGACACCAATCTTCCCAAATTATTCTCATAAATTCTGAAGGGGGAGCCCATGCCATTTAGGAGTGCTTCAACAGCCTTTTTTAAAGTTCCATCTCCAAGCACTTTACTGTGCTTTCCCCAGCCAGTTAAAATGTTGACAAAC



gi|13781660|gb|BG646548.1|BG646548 EST508167 HOGA Medicago truncatula cDNA clone pHOGA-9I15 5' end, mRNA sequence

CACTTCAGATTGATGGTGTGT
|||| ||||||.| |||| ||
GTGATGTCTAATTTCCACCCA

EST sequence (targeted fragment marked with yellow):
GGTTCTATTGAAGAATTTACGATTCTGTTGAAGTGTTTTTGAGTGCTTGACTAATTTTCATTCAACTGTACTACATGGCTGAGGAGGGTTACAGGGTTACTCTTAATGTTTATGATCTAAGCCAAGGACTTGCTCGACAGCTTTCAACGTCGTTTTTGGGGAAAGCTATTGAAGGGATATGGTGAGTGTTTTTTCCCCTTTGTTTTAGGTCCATGGTATAATGTTCATGATCTAATGGCTTAATTAGTTGTTTTATTTTAGAATTATGGATTAGATGGTTGTTTTATGTTTATGTTGTGTTGAATGAATGGAATTGACTTGGAACATTTGAACTATAAGGGACTGACACAGACACAGAGCACATACACAACACCGACACATTGGCATTGATAGTAACTTGAATAATGGAGGAAGTTGAATGTAACTGCATGTGTTAGTATCGTGAACATTGGCACGTGTCAGACACTGAACCCACCTTTAATCTGTAGTGTCGGTGCTAGATAGCTTTTAATTACTATAGGTTAATCATAGGTTTGTTTCTTTCGTCTGGTATCTTGAAGGTACATGCCAAAATCTTGGTTGTGCTATTTTTTGTTGGCATATTGAACAGGTGGTGTCAATGGAAAGATCGTAGAAGATAGTGGTATATTCACATTCTACTAATTATTTGACAAAATTTTGTACTAAATTGAGTATTGCGGGAGAATAGCAATTTGTTTAATTTCTATCAATATGATGGTTCTATAGTGTTAATACTATTTGATAACAATGATATTTGAAAGTTACA



gi|13782674|gb|BG647562.1|BG647562 EST509181 HOGA Medicago truncatula cDNA clone pHOGA-17A22 5' end, mRNA sequence

CACTTCAGATTGATGGTGTGT
|||||| |||||| |||||||
GTGAAGACTAACTTCCACACA

EST sequence (targeted fragment marked with yellow):
CTTCCGGCTGCCACTGCCGTTGGGCAACTTCAGCATCATACTCTCGACTTACCATTGGTATCCCGGTACCCGCCACTTGGTACGGTGACCCCGAAGGAGACGGCAGTACTGGTAACAAAACCTCTCTCTTATTTGTTTTTCTTTTTCACAGCTATGTATGAAACACGAAAACGGACACCATTGACACAGATAAAATTTTGACAAAATGACATTATTCAATATGTTGGTGTCGGACGCGATGCGTGTCGGACAGCAGGACACACCTTCAATCAGAAGTGTCTGTGCAAGAGAGTGTAGCTCTAACACTTCTGATTAAAATCGTGTTTGGTATTAGACACAATTACAATTACATTCAATTATGCCATTTTTTAATAATAGTGAGTATGTTGGTGATTAATTATGATGAGAATGTGTGAATTAGGGGGAGCTTGTGGGTATGGAACATTGGTGGACGTGAAGCCATTGAGAGCGAGGGTAGGGGCAGTGGGACCAGTGCTGTTTATGAAAGGGGAAGGATGTGGTGCTTGCTATAAAAGTGAAGTGTTTAGACAATAGCATATGTTCAAGGAGAGCAGTTACTGTGAATATCACTGATGAGTGCCCTGGCTGCCCAACTGACACCACCCATTTTG



gi|11912857|gb|BF647727.1|BF647727 NF011B12EC1F1095 Elicited cell culture Medicago truncatula cDNA clone NF011B12EC 5', mRNA seq

CACTTCAGATTGATGGTGTGT
|||||||.|||| ||| |||
GTGAAGTTTAACAACCTAACA

EST sequence (targeted fragment marked with yellow):
GTTGCATTGAGAGACAATCCAAAAGTTCTTTGTTCTTGAATTAGTTTTATGTTCATGGCTTGCTGCTTTAGTGCAAGGGTCAAAGTTGAAAATCCTACACATAATGAAAAATAGTTGCCAGAATATTGCATAAAAGTTAGTTCATGTTTCTATTATGACATGGACTGGTTTGAATTCAGAGGTTGTTGGAAGAGAAGAGGTTGTTTCGGGTGGTTTGAGCAACAAGGTATCCTCTTCAACTGTTCTGCTAACTTCAAGGACTGAGGGTGAGATATTACAATCCAACAATTTGAAGTGTTTCACATTCAATGAGGTAAAAACTGCGACAAGAAACTTTCATCCAAGTGGTGAACTCGATGAACGTGGATTTGGTAGGGTATTCAAGGGGTGGATCGATGAGCACATGCAAGCTCCTACGAAACCAGGTACTGGTTTTGTTGTTGCTGTGATGATGTTTAACAATGAAAGCAACCAGGAACATAGTGAATGGTTGGCAAAAATCAATTACCTTGGGCAGCTGCGTCATCCTAATCTCGTGAAACTGATTGGTTACTGCTTANANGGTTCCTATCGGATTTTAGTATATGAATTTGNGACCAAAGGAAATTTGGATAATCATTTGTTTANAAGCTTTTCTNACTTTCTACCACTCACTTGG



gi|20174838|gb|BQ122888.1|BQ122888 EST608452 GLSD Medicago truncatula cDNA clone pGLSD-30M14, mRNA sequence

CACTTCAGATTGATGGTGTGT
||||| |||||| .||||||
ATGAAGCCTAACTTTCACACA

EST sequence (targeted fragment marked with yellow):
GTAGGTGAAAACTGATAGAATTGGTATATGATATCTGTTAAAACTAGTGGCTGCTGATTTGAAATATTGGTGTTAGGTTAGTTCGGCAACGGCGAAGTCTACCTGTGAAGCACCAACACGACACTGTCACGTAAACTCCAGTAATAATAATTTAAGAAAATTGAAGTGACTGAATGTCACCGTATGTATCTGTGTTGGACACCAGACACACTTTCAATCCGAAGTATTGGTGCTATATAAAACTCTATCCTGTCCCATGGGGACCTTTTGTCAATAACTGAATTATGAGCTTCTTAGACCTTTATGCTTTTCAGACAGAGTTGCATGTGCTGTGTTGTTCTGCTGTCTGAGAATAACCAAAGTGTTTGCATTGGGATAAGCACAGCCTGTTAGTTTTACACAACCTTTTACTGTATTTGTTGTCTATTTTCATTCACCAAAATGTTAAGAA



gi|27408825|gb|CA921895.1|CA921895 EST639613 MTUS Medicago truncatula cDNA clone MTUS-45G7, mRNA sequence

CACTTCAGATTGATGGTGTGT
||||| ||||||| |||||||
GTGAAATCTAACTTCCACACA

EST sequence (targeted fragment marked with yellow):
CTTGGCATAACTTGAAGATAAAAATACAAGAATATGGTAGGCATACACATAATTTATTCACTATGAAGCACGGACACAGACACTTGACACGACACTTACATGATGACACCAATAATAATTTAAGAAAATGAAATAATTGAATGTACCCACATATGTTTGGATCGTGTCGAACACCAAACACACCTTCAATCTAAAGTGTCGGTGATACATAGTTTATTCGACACCAAAGCTAAGTCTTTGGTTAGATAAATAGCAAAAATTCAAAGAGAATGGTTTCAGATGGATATGCTGTTGGGAATTCCCTTACCAGTGAGTCCACCCTCCCTAGAATAATCAGAGGTATTGGGAAACAGAAGGGTATAAGGCAATTTCACTGGCCCATTTCTGTTCTTCAAACTTGGGTCCTTGTTCCTTTTCATGATATTATTCTCAATCTCCAGTAGCTTCTGTGAAAATCGCCTAAATGCTGCCAATGGTTCAGCGTCTGCAGTCCAATCAGGGTCTACTGTCTGTCCAAGATAAACCTCTTCAGTCGAATGCCTAGACAGAACTTCTATCAATGACACACCAAGAAGAGTTTGGAACTGAGCTGTGATTGTTTTTAAGAATGCTAATTCAGGATCTGACTCAAGCTCTTCATACTCTGGTGTACCTTGCTCAAGCATAAACCTACGACTAACCGTTGGACGATTTGGTAGGTAACCTGCATAAGGGTATTTGTCAAAGTTCACAGCTGCATGAAAAGCAGAAGCCACCCATATAATAATGGTTGCAGATTGTATGAGATCGATTCTTGTCTTCATTACT



gi|148765586|gb|ES612280.1|ES612280 MTGland_A018_2007-05-03/MTGlandA018_C07_030_1 Medicago truncatula A17 glandular trichome Med

CACTTCAGATTGATGGTGTGT
||||||| ||||| ...||||
GTGAAGTATAACTTTTGCACA

EST sequence (targeted fragment marked with yellow):
TTACGGCCGGGCTCTAACATTGGCTTCTGGCATTTACAATAGCAGTCAAGTAGCTTCTTCTATAAGGAAACCACTGAAGCCTAACACATAATCTCATCGCAGTTGAGTTTTCAGTTGCTATGAAGCACTAATAAAGACATGGACACCGAATACAACACCGGCACGTAGACATTTGGTAATAATTTGATAAACTAGAAGTGATTGCATGCAACTACATATGCCAGCGTTGTGCCAATGTCGGGCATTCATACACGTTTTCAATATGAAGTGTTGGCACTACATAGTTTAGTAGGAATCAACTCTTTAGACCATCTTTAGAAATTTTACTTGATTTATTGTGACGTGCAGTATATGCATAATCTGAAACAAGTCTTTTCTCACCATTAAATATGTTAAGATCAAGAGAGCTTCCATACTTGCAAGGACCATGTAGTAAAATATTAAATGTAACATCATTTGGAACCACTCCTAAATTAAGCATTACATCAAGCAAACATTTCAACATTTTTCTTCTGCAAAAACCATTCATTAGCTATGAAGCACGGGCTCCGACATGGACGGGCACAGACGCATCAACACGGCTGATTTTAAAATTATAGGACATTGACACTGATATATACATTTATTTATTATAGTTAAATAAATATGAACATCGTCTATAAAATATATAAATTGAGAGCTAATTTTTTTTTTTTTGATCTTAGCTAAAATATTATGTACATCCATCTACTANNNAAAAGTAATATTTCTCTTANTAAATATGACAATTTTTCATGTCATCCATCCNTCNACNANACCGAAAAGTNAAAACAAAGTTATAGAATTTAATGNCTTCANTCCCTTCATTNNNANT



gi|21905879|gb|BQ750474.1|BQ750474 EST633210 KVKC Medicago truncatula cDNA, mRNA sequence

CACTTCAGATTGATGGTGTGT
|||||||||||| ||..|||
ATGAAGTCTAACTTCCGTACA

EST sequence (targeted fragment marked with yellow):
ATATTGAAATCTACATTCATATTTATTCATGTGATTACTACCTAAACACGTCCTTAAAGTGACACTTTTGTCACAACACTGCTTTGCACTTTAAATTACATTAACTTGGGTAAAATTTAAAAAGCAACAATATAATTTTATAAGGCACTTGAAATCAATAGAACATATAAATTAACTAAAGAATACCACCACTTTTGGGGTATATGTACTTGAAGAAGAAAAAAAACACACACTTGATTTGTTTTAAAAGTTTCCTTTTATGAAACACTAATACCGACACATAGATTTGAACACTAAAGATTAAACATGCCTTCAATCTGAAGTATATGTGCTATCCATATTTTCGTTAATTGGCTCTCCTGCATTGCTTCCTAATCTCCCCATTTGATCCGGTTAGAGGCTTGTTATTTCCCATCTTAATCAT



gi|27407716|gb|CA920786.1|CA920786 EST638504 MTUS Medicago truncatula cDNA clone MTUS-32E12, mRNA sequence

CACTTCAGATTGATGGTGTGT
|||||||.|||||.....|||
GTGAAGTTTAACTGTTGTACA

EST sequence (targeted fragment marked with yellow):
CTTCCCATCCAGTACAACACAAATTGAAGCAAAAAAATAAAGCACTGACATCATCATCCAAAATCCAACCTTAAACATGTCTAACTAATGAAATGCCATATGTCCAGTTATGGGTGTGAATTGAGAGGTTGTGTCAATAGAGGCTAGCGAAAAACAAGCAAGCAAAACTACAACCATCTGACGAACACAAGCTCCATTTGGCAAAGGAAAGGTACAGACCCTCTCTCCCACACACACCATAGTTCAAAATTCAGGTCATAGGTAGTTTATCGCCGTCGTCTTCTGAAAAATTGTCAATTTGATCGTCGTCGCTTTCTGACATGTTGTCAATTTGAAGTGGCCCCTTAATACCGCCATTATTACCACCAAAAAGTTCCCTCTGTGCTTTCTCCAGAAACTCCTGAGCAGCAGCTTGAACAGAAATAGATGGCTTTTCAGAAGATTGATACTTTCTCTTTTGACCAGCCTGCTCCTGATGTTTCCTCTTCTTTCCCTCCCCTCTACTTAAGTTCCTCATTTTCTGCAGTTGCTCTGGAGTGAGGTCAGGCAGAGAGTGTTCGATGAAGCGAGTAGCTGCTTGAGAATTCAACATAGTAGAAGGTCGCAACGGAGCCTTATTCAAATCTAGAAGGCGTTCAAGTTTGTCTTGATATAACTCTACTCTATCAAGCTCTGATTTGACAGGGTTATCATCAGGTTGAACTCCACTACACCTCAATTTCAGTGTGAGGAAGGTGGAAGTGATCTTGGGAGAGAGAAG



gi|27407415|gb|CA920485.1|CA920485 EST638203 MTUS Medicago truncatula cDNA clone MTUS-28G12, mRNA sequence

CACTTCAGATTGATGGTGTGT
||| ||||||||| |..||.|
GTGTAGTCTAACTTCTGCATA

EST sequence (targeted fragment marked with yellow):
ATGAAAACTATTTAATAATAACAAGCCATATATACAAGTGAAGCTTGAAATATAAACAAGGAACTAATGCACTATGAAGCATAGATAGATAAAAATACCGGACACGACACTAGTAATAATTTGAGAATATGGAAATAATTTGGACATAACTACATGTGTTTGTGTCGGACATCAGATACGTCTTCAATCTGATGTGTCGATGCTAGATAGCTTTAGCACCCTCACAACAAATAATAGCTAATATTTGTTCATGAATACACTTAAAGAGGAGGACACATAAAATCACCAAATGTTTCTATATCTTCAAGATCTGCATCAAGATCAAACTCATCCAAGTCCATGCTGCCTACACTAAGAAGTCCACCAATCTTAGGGTTGTTAAGAGGTTTTCTTGCCTCTTGTAGAATGGACAGAACTTCATCAACACTTTGTGATGGATTATTTACATCATTGCTTTGCCAGCTTCCACCTTCCATTAATTCTACTGGTAAGTTCCTTAAAAACCATGGATGGTTTTTTATTTCTGGTATTGTTATTCTCTTTTCAGGATTAGCCACAAATATTTGAGATAGAAGATTTATACATTCCGGTGAAACTCGTACAAAATCAGGAACTTTGTACTGAACACTAAGTATCTTGGAAATGGTTTTCTTAAAGTCCTTTGGATCCGCAGGGTCTTCAAAAGGATAAGCGCCGACTAACATCACATATAAGGTGACTCCACAAGACCAAACATCTGCAATCTTTTCATCATATTCTTTCTTCGTCAGAACCTCAGGTGCAATGTAAGCTGGAGTTCCTACTGTAGATTTTGGTTTGTGATGCAACACAGAT



gi|157979499|gb|EX527771.1|EX527771 MTGland_A033_2007-06-18/MTGlandA033_A04_016_1 Medicago truncatula A17 glandular trichome Med

CACTTCAGATTGATGGTGTGT
||||||||||||| |..|||
GTGAAGTCTAACTTACGTACA

EST sequence (targeted fragment marked with yellow):
TTACGGCCGGGGNNGCAGACATTCNACGTTACACTGACACGTAGACATTGATAATAATTTAGAAAATAGAAGTGATTGTATTGGTGTCATGTTGGACATCATACATGCATTCAATCTGAAGTGTTGGTGCTACACAAGTATTTAGAAGATTTGTCCCGTCCTTAAGAACTGGTTATCTGATTTAAATGATAGGCTAAGAAATTGAGATACTTACTCGAGATTCTCTCTTTAAACAGGGACGTCTTAAAAGTTGTTAAAAACCATAGTCATTAAAAACCTATCAGTTGAAGAAAAACTTTCCGATTGTTATTTAGGAATCATTAGACTTTGCCAATCACTTGCTTCTTTGTTGAACTGTTACGAATCTAGTCACTAGTCCCATGCTTGGATCAAAAAATTAATAGTTTCATTAAAATATTGATCTTTAATAGACCGTGATGCATCGATTAGCCAGCATCNGTCCTTACCTAGCANAANNGACNNGGCTTGATTGAATTTGTTTTATTTAGAGTCGTGATTGATGATTATATATATTTTTTTTGTTTAAAAGCTCTATGGAGTCTAGAGTATTGTTCAATTCGGTGTTGATTTTTAATAGGCATATCATAATATTTTGTCCGTGGTTTATAAAATTAGAAATACTCTTAAACAATGATTGATTGTTCAAAATATGTTGTCTAGCNNATTAATACTAGCCATTTCTTTTACATTGATATTTNAATTCANTTTATCTTTTGTTNGTCTCNNNANGGNTTAACTCCNCTCGACCTTTGCCTTTACTCTGGTCAAATGTCNGTACNTATGAG



gi|7565092|gb|AW690356.1|AW690356 NF029G04ST1F1000 Developing stem Medicago truncatula cDNA clone NF029G04ST 5', mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||| |||||||. .|.|
GTGAAGTATAACTACTCTATA

EST sequence (targeted fragment marked with yellow):
TCTAATTCAGGATTGCCTTTGACACAAGGGTGGGGTCCACAAATAAAGGGATTAACAGGAACAAACGTACCTAATGATGAAGACGGCATGGTTCGGGTCGGAGCTCAGTGCACAATAGAAAGTCTGATGATAAGGTTTTCTCCATTTTTATTCTTAAGTTTTTTTATTGGTCTTTTTATTTATTTGCTTTATATTGTTTGTTTGAATGATATATTGTTTGGATTCCTCTTTGCTTAATTTTAATAATAATTTGAAGAAATGAAAGTTTTTGAATGTAATTATACGACTTGGTGTCATATCAGTGTCTAAACATATCTCATCAATATGAAGTGTTGGTGCTACATTAATTTGAATAATTTACAAAGAGTGAAATGGAAATTTGAATATTGGTGAATGATTGTTGGGTGCAGAACAAAGCTCATGGCAAAAGATACAATTAGGTTGAGTTTTGAATATTGGTGAATTGGTGAATGATTGTTGGGTGCANAACAAAGATCATGGCAAAAGATACAATTACTTTGTTGGGTCATTTAAGTTNGGAAAAAGGCTNATGTTTTTGGGCACTCA



gi|260527784|gb|GT142134.1|GT142134 METC022TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence

CACTTCAGATTGATGGTGTGT
||||||||||||| .|.|..|
GTGAAGTCTAACTTTCGCGTA

EST sequence (targeted fragment marked with yellow):
GGGGTTTGTGAATTTGGTGAAGGAAATGGGCAGGCAACATTTCGTTGGAGAAAAAGATGTTCAAGTTCTTGAGGATGATGATTTTATCATAGTTGGTCGATATTAGTTTAGATTGCCATGCTCATGAATGTTTTAAGTTACTCTGTGTATTGTATGTTATATTGTGAAAGTTGACACAGACACCAGATGCGCTTTCAATCTGAAGTGTCAGTGTTACTTAGTTTAGTTGTTGAAGTAAAAATAAACCGGATCATGTACACAATATCACTCAGTTTTGGAATAGATCTGCTAATACATTTTGTGCCAAAAAAAAAAAAAAAAAAAAAA



gi|157981382|gb|EX529654.1|EX529654 MTGland_A057_2007-06-13/MTGlandA057_A11_048_1 Medicago truncatula A17 glandular trichome Med

CACTTCAGATTGATGGTGTGT
||||| |||||.|||||||||
GTGAAATCTAATTACCACACA

EST sequence (targeted fragment marked with yellow):
TTACGGCCGGGCAGCNNAGAGGAAGTATAAAGTTGCAGTTAAAATAATACAATATGTAATCCACGGCCACNAACATTTATTCCTATATATTTTACCAAACCAATAGACATGGTAGAACTATGAAACACAGATATGAACACCACACATGAAACCGACACTGACAATAATTAGAAAACGTGAAAAAAGTTGAATGTAACTACATGTGTCGGTGACCGATTCTGACACACATATCATACACCGGACACACCATTAATCTAAAGTGTATATGCTAGGTGCTACATAGATGCAGAAAACATCCTCACCTCGGTAAATATGTCGAAATGTCCATGTATTATCATGCAAATCTCGAACAACAAGTTCTTGAGTTGGGGGTTGAATTGTGTAATCCTAAAACCAAAACACACTAATCAAATGAGGGTTCTTGTACAGCCATAAAAGAAGGTTGCAACCACCTAGTGCAATATAGCCTTACCAATGGAGGAAATAGCTTTTCCGCAGCTCTGCGTGGAACCGAAAAGCCACCATGTGTGCTAGTATCACTGGCAGTCAAAGTTTTGCAGAAAAACTCAGTTGGATGTTTACTTTTGCTTAGTCCAAACTCAGATACTGGAAATACTTCTTTTTCCTAAAAAAATGGAAAATAATACATCAATAATAATCATAACCAATAACATTTAGATGTACAATAACAACAACAATAATTCTAGAACTAACTAATTCATATAGCTTACAGAATTCAGTGGTTGGAGAGTCATTTGAGCATAGATTTCATCTGTCTCCTTGTCAGCCTGTTATCAAAACATACAATTTAAAGGGGTTATGATAATTTGAAGTTTGAATGAGTGGTTAAGCAAAAAGTGGTAAATCAAGAGAGAACACTACTTACATGTAGTGTGACATTTTGTACNTGACACNNCNNNTGNNANGGNANACTNNNNAGTTTGGNATCTGTGNNNNGCTNNNNNNTA



gi|8172208|gb|AW980669.1|AW980669 EST391822 GVN Medicago truncatula cDNA clone pGVN-55F23, mRNA sequence

CACTTCAGATTGATGGTGTGT
|||| ||||||| |||||||
ATGAACTCTAACTTCCACACA

EST sequence (targeted fragment marked with yellow):
GCGGACACCAAACACACCTTCAATCTCAAGTATCAATGCTACATAGAGTCCGATGCACAGATAAAATAGGAGGGTTGTTTAGTTCTTAAACAGTGAAAGTAAATTTTGTCAAATCTTTATGATAGACTATAGATTATAACTTGGTTATAACTTATAAGTTTGTGTAGTTGAGTTCAGGATCCACATTTATCACATGTTTGCTAGAGCAATGAAAGATCACGTACTTCAGAATTTGGATATGTATGTTGTTAACTCTAGACTACAAGTGAGTGAGGCAACACCATGACTTGTCATTGCAGGTAACAGTTGGACGCAAGCCTGTGACCGGACTAAGGCTGAGCCTAGAAGGGAACAAACAGAACCGACTCGCAATTCATTTGCAGCATTTAGTCTCACTCCCGAAAAACCTCCAACCTCATTGGGATGCACACATGGCCATAGGTGCTCCCAAATGGCAAGGTCCAGAGGAGCAAGACAGCCGTTGGTTTGAACCGATCAAATGGAAGAACTTCTCCCACGTAAGCACTGCGCCAATTGAGATAACTGAAACTAACATCGGAGACCTCTCTGGTGTTCATATTGTCACTGGTGCTCAACTCGGCGTTTGGGACTTTGGTGCCAAAAATGTATTACACCTCAGACTACTTTTCTCTAAAGTACCAGGGTGCACGATAAGACGGTCAGTGTGGGATCATAACCC