| mature miRNA: CCTGTAATCCCAGCACTTTGG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|157980746|gb|EX529018.1|EX529018 MTGland_A049-_2007-05-31/MTGlandA049-_A06_024_1 Medicago truncatula A17 glandular trichome M CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): CGGGGGGGTTNTTTTTAGTGCATTCTACAGGATAAACCAATCCTTTTAACAACAAAAGAGGGTTTTTGGTTTTGTTTGTTTTTTGTTTTTGTTTGGTATTTTAATAGAGATGGGGGTCTCACTTTGTTGCCCAGGCTGGTCTCGAATTCCTGGGGTCAAGTGATCCTCCTGCCTCTGCCACCTAAGTGCTGGGATGACAGGNGTGAGCCACTGTGCCCAGCCAG | |||||||||
gi|157983746|gb|EX532018.1|EX532018 MTGland_B031_2007-06-04/MTGlandB031_B04_015_1 Medicago truncatula A17 glandular trichome Med CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): TTACGGNCGGGGNNGGGGTATTACTCTGTCATCNNGGCTGGAGTGCAGTGGCATAGTCATGGCTCACTGCAGCCTTGAACNCCCAGGCCCAAGTGATCCTCCCNCCTCANCCTCATGAGTAGCTGGGACCNCNGGNGTGCNCCCCATGCCCAACTAATTATTTTTGTAGAGATAGGATNTCACTGTGTTGCCCGGGCTGGTCTCAAACTTCTGGCCTCTAGTGATCCTCCCGCTTTGGACTCCCAAAGTGCTGGGATTATAGGTCTGAGCCACCATGCCCAGTCAGCGTTTATCANATTACTTACCATCACTACTTTGTCCTGGGGAAATCCTCTTAATCCTTAAAGGNGCAATCCAAAATCATAATGTTCCCGTGTTACTTACTGTTACTTTTTTTTTTTCTCCTATAGTGGTTTGATGATAAGAACCCAATTTGGGCCGGGCGCGGTTGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTAAGCCAGATGGATCACCTGAGGTCGGGAGTTTGAGACCATCCTGACCAACATAAAGAAGTCCTATCTCTACTAAAGACACAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTATTCCAGCTACTTGGGAGGCTGAGGCAGAAGANTCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCNTTGCACTCCAGCCTGGGCAACAAGAGCGAAATTCNGTCTTNNAAANAAAAAA | |||||||||
gi|157981204|gb|EX529476.1|EX529476 MTGland_A054_2007-06-25/MtGland_A054_G09_034_1 Medicago truncatula A17 glandular trichome Me CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): ACGGCCGGGCCCTCNTTTCNNAGTTCCTTTTATTCCATGTTGAAAAGGGTCCACTNCCCACAGGGCAATGTCTCCTTTTTAAAGTCATATGCTCCTTCTTTTATCTTTGGAACAAGGCAGAGTGACAAAGGTGATTTCCAAATTATACTTGAATCAGTGCCTAAGCAGCAGTTTGAAATCTTAATGATTAGGCTGTACTAATGAAATTGACCATCTATATATAGCAAACCTAAGCACTTTACTTATATTTCATTCTCAAAATGACCCACTGAGGTAAGTAGTAGTATTATTCCGACTTGACAGATGAGGAAACTGAGACTCAAAGAGGTGACAATCAAGTCACCTCTTTGTACAACATTACCCAGTTGATAACAGCAGTGCCAGGTTTGAATTCTAGTTGGACTCCTACGATGGAGCATTTAGCACCAGTCTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGGAGTTTTGCTTTGTCCCCCAGGCTGGAGTACAGTGGTACGATCTCGGCTGTCTGCAGCCTCCGTCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCACTACCACACCCGGCTAATTTTTGTATTTTTAGTANANACGGANTTTCACCATGTTGGC | |||||||||
gi|148766381|gb|ES613075.1|ES613075 MTGland_B003_2007-02-18/MTGlandB003_B07_031_1 Medicago truncatula A17 glandular trichome Med CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): GGAGTGCAGTGGCTCGATCTCAGCTCAATTCCATCTCTGCCCCCCCANATTGAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTANTTTTTNTATTTTTANTANANACAGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATAATANACCCACGTCGTCCTCCCAAATTGCTGGGATTACAAGCATGAGCCACTGTGCCTGGCATAAAGTGAATTCTTAATCATCCTTGAAAAGAAAANGGCAGGNCAGGTGTGGCTCTCACCTGTAATCCCAGCACTCTGGGAGGCTGANTTGGAAGGATCACTTGAGCCC | |||||||||
gi|157981266|gb|EX529538.1|EX529538 MTGland_A055_2007-06-26/MTGlandA055_F05_019_1 Medicago truncatula A17 glandular trichome Med CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): TTTTAGTAGTATCTTGATGTCTTCCACCCCCACTGGCTTCTACATGCAAGTTAAGACATACATATATAGTAATGGTCTAGTGCTCAGACTTTAACATTCTCCATTAAAGGAAAGCCTGAGCTCCTTGGAAAAATGGCCAAATCCAAGGTAGGAAAAATAACAGGGTAAACTTGGAACACCTTGCTGTTCTAACAAATAAGAGAACCTGTCAGGAAGAAACAGGAACCATCTTGAAAAGGATGTCACCAGCCAACATGGAGACTTCTTGTTTTTTTTTTTTTTTGANANANANTCTTGGCTNTGTTGCCCAGGCTGGNGTGCAGTGGCACTATCTCAGCTCACTGCAACCTCTGCCTCTCAGCACTACAGGNGTGTACCACCNCGCTGGGNTAATTTTTGTATTTTTAGTACAGATGGGGNTTCACCATATTGGNCAGGNTGGNCTTGAACTCCTGACCTCATAATCTACTCNCCTTGGCCTCCCAAAGTGNTGGGATTACAAGCGTGAGCCACTGCGCCCGGCCAGACCACTATAAAGGATAAAATTATGAGTTAATATATGAATTAAAAACNGAACAAGTCCACACTGATCTGAAAGTAAGTGTGGAGGCAGGAGGAAGAGAAACATCTTCTTTAGAGAAGAAAGCCAAATAATAAATACATAAGGGATTACAGAAATAGAAAATCACCATTTTTACAATCACTATAGTATACTATTACTGATTCAGGTAAGAATCAGTGAATACTAAAACNACTATGTGAAAGACTGTCGGGAAAAAGGANTGTCACAGTGTCAAAATATCATTCCACAGATTGCTTATTAATTACAAAAAGAACAAAGTACCTTTACAACTGGGAAANCTGGAAGGNACTGCCTTNANCNAGTGATCNAACTTACTACCNCCNATGATNAGCACAAATTC | |||||||||
gi|148764862|gb|ES611556.1|ES611556 MTGland_A009_2007-04-04/MTGlandA009_A02_008_1 Medicago truncatula A17 glandular trichome Med CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): GCNTTACGGCCGGGCCNTGGTTGAATTCTCTGAATTTAAGGTGAGTTTCTTTTGTTTGTTTCCTTTTTGTTGTTTGTTTCTTTGTTTTTTTTGTTTGTTGGTTGGTTTGTTTTCTGTTCGANATGGAGTTTCACTCTTATTACCCAGGCTAGAGTCCAATGGTGCGATCTTGGCTCACTGCAAACTCTGCCTCCTGGGTTCAAGCGATTCTCCTGTCAGCCTCCCAAGTAGCTGGGATTACAGGCACTCGCCACCACACCCAGCTATTTTTTTGTATTTTTANTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTCAAACTCCTGACGTCAGGCGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGAATTTCAGGTGTGAGCCACTGTGCCTGGCCTGTTTCTTTGTGTTTTAATCAAATGACTTTACATCTCCAANATGATTAAAACAAATTTTTTGAAAACAGCAGAAGGGCGGGGCACGGTGGCTCAGGCCTGTAATCCCAACACTTTGAGAGGCTGAGGCAAGAGGATTACTTGTGGCAAGGGGCTGGAGACCAGCCTGGACAACAGAGCAAGACTCCGTCTCTACTAAAAATAAAAAAAGATTAGCCAGGCATGGTGACGCATCTTTGTAGCCCTTGCTACTTAAGAGGCTGAAGTGGAAGGANTACTTGAACCAAGGAGTTCAAGGCTGCAGTGAGCTATGACTGCATCACTGCACTCCAGCCCGGGGGACANANTAAGACCCTGTTTCT | |||||||||
gi|157981278|gb|EX529550.1|EX529550 MTGland_A055_2007-06-26/MTGlandA055_G07_026_1 Medicago truncatula A17 glandular trichome Med CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGGGTTTCTCCATGTTGGTNNGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGGTTACAGGCGCGAGCCACTGCACCCGGCTCCACTCCACTCCTTGTTGCTGTCGGGTGGGACAGCAAGGCTGGAGCCCAGCATCCAATTAGGAAACAAGGTGGAAATCCAGGGCCAAGCCCCATGGCTGCCAGTTGCCCTCGTAATTAAAGACACACACATTAAAGACAGCTCCGAGGTGCCATTAAACATCCATTAAACTGGCAAAAAATAAATCCAAAAGGTAAAACTCAACTCTAGTTGGCAACTGCAGCAGAGAACACAGCACAGGTCACAGGTGGCTCANNGGCAACAGCCCTCACACCTGGCTCCCTGTCCCTGCCCTGAATTGTTCCATGTGGGAACTGGGCCACACTGGTCAGCTTCATCAAAGATAGATTTGCCAAATTGGCATACAATTCACATGTCATAAAATTCACTCTCTAAAAGCGTACAAGTCAGCACGGTCTCAGAATTTCCTGAGACCAATAAAACCTCCGGAGCCCTTTGACCCAGCACTCCAGCGTTTGGGAATAAGCCCTGTAGAAGGAGCCCAAGAGGAAACAAAAATAGAAGTGTGTCCAAAGCTGGAAGCTGCCCCAGCCAAACACTGGAAACACCCAGCTCTCCACCNNGACAAACCACGCGAGCCACAGCTTGCGGGCGATATCCCATCTCCATCCTCACCACTGCTCAGCCCAGACCTCCCTCATCTTCCTGGCCTGCAGACCTAGCAGTGGCTGTTCCCACCCCTGGAACACCCTTCCCACCTGGTACCTGATGCCTGCANGGCCCATGCACGGCATATTCACTGCTGTATCCCTAGAGCCTCGCACAGTGCCTGGTGCAGAGANGATTTTCAGCAAGAGGCACCGAAGGGAANATACCTATGTGACTGTGNGNNNNNCNGNNGANCNAGTGGNANCTCTGAANNCTGATCGGGCNNNTCATNNTNA | |||||||||
gi|148766381|gb|ES613075.1|ES613075 MTGland_B003_2007-02-18/MTGlandB003_B07_031_1 Medicago truncatula A17 glandular trichome Med CCTGTAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): GGAGTGCAGTGGCTCGATCTCAGCTCAATTCCATCTCTGCCCCCCCANATTGAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTANTTTTTNTATTTTTANTANANACAGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATAATANACCCACGTCGTCCTCCCAAATTGCTGGGATTACAAGCATGAGCCACTGTGCCTGGCATAAAGTGAATTCTTAATCATCCTTGAAAAGAAAANGGCAGGNCAGGTGTGGCTCTCACCTGTAATCCCAGCACTCTGGGAGGCTGANTTGGAAGGATCACTTGAGCCC | |||||||||