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mature miRNA: CGTTTAGGTCCCTTAACTTTA
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|20284997|gb|BQ147938.1|BQ147938 NF048H09FL1F1079 Developing flower Medicago truncatula cDNA clone NF048H09FL 5', mRNA sequenc

CGTTTAGGTCCCTTAACTTTA
..|||||||||||||||||
ATGAATCCAGGGAATTGAAAA

EST sequence (targeted fragment marked with yellow):
CAAACAAACACACACACACACACACACAGTTACGCGTCTTCTTCAGATCAATCATTCTGTGAAGGGTTCTTTCTTCAAGTTCCAGAAATGGGTGTGCCTCAAAATGCTCACGATGAAGATGGAACCTTGGAGATTGGAATGGAATACAGAACTGNTTCTGGGGTTGCTGGACCATTGGTTATTCTTGAAAAAGTTAAGGGACCTAAGTATCAAGAGATTGTTAATATTCGGTTAGGAGATGGAACGACTAGGCGTGGACAAGTTCTAGAAGTTGATGGCGAAAAAGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTCACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCACTGGACATGCTTGGCCGCATCTTTAACGGTTCTGGAAAACCAATTGATAATGGCCCACCCATATTACCTGAGGCTTACTTGGACATATCANGAAGTTCTATCAACCCCTAGTGAGAGAACCTATNCAGAAGAGATGATTCANACCGGAATTCTCTACNATCGATGTCATGAATTCTATTGCTAGANGTCAAAANATCCCTCTTTTCTCANCTGCTGGTCTCCCCATAATGAAATTGCTGCACANATATGTCC