| mature miRNA: GAGCCAAGGATGACTTGCCGG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|260528073|gb|GT142423.1|GT142423 METC368TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCGAAGGAGACAAACGGAGGCAGTCCAAATGTCTCGGGGTCAGAGGTGACTAGCATGTATACACAGGGAGTTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAGCAGCTGGCAGACAGCTGCTGGAACCATAAGTTTCGATTCAGAAAGGAAACAAGTGGGTTTGGTACAATGTGAAATATTTTGCACCAAACTCATCCTTTCCGAGACCAGATGAAGAAGCTATGTTTCAGTTTGTTGTGTTTACTACGACAAATTTAGTTTCGGGAGACTACTTTTCCATCTGGTGCTCAGGCAACTCATTCTTGGCTTATTCTCAGGAAACTCATCCTTGGCTCGTAATATTTAGTAGTATTGTCATTGTCTTTCCGCGCAGGCTTGCCGTGGCATGGTAGGCATGCTAATGACTTTGGTATTTTCATGCAGTTATAACTATGATGTGTCTTTGTTTGTTGTTAAAATAAAAAACATGAACTCTAGCTAGGTGCATGTGTGTGTTTTTAATCTTGTCTACTAAGTTTGGTGTTTTGTAATGGATTTCTGACTTTATGGAGTAATGTATTGTAACTCTACTAAGAAGTGTAACATTTTATTTCTCCCTCTCCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|55447643|gb|AJ848025.1|AJ848025 AJ848025 MtSN4 Medicago truncatula cDNA clone MtN402E13N1, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAAATATTTTGCACCAAACTCATCCTTTCCGAGACCAGATGAAGAAGCTATGTTTCAGTTTGTTGTGTTTACTACGACAAATTTAGTTTCGGAAGACTACTTTTCCATCTGGTGCTCAGGCAACTCATTCTTGGCTTATTCTCAGGAAACTCATCCTTGGCTCGTAATATTTAGTAGTATTGTCATTGTCTTTCCGCGCAGGCTTGCCGAGGCATGGTAGGCATGCTAATGACTTTGGTATTTTCATGCAGTTATAACTATGATGTGTCTTTGTTTGTTGTTAAAATAAAAAACATGAACTCTAGCTAGGTGCATGTGTGTGTTTTTAATCTTGTCTACTAAGTTTGGTGTTTTGTAATGGATTTCTGACTTTATGGAGCAATGTATTGTAACTCTCAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|9056606|gb|BE240422.1|BE240422 EST404471 MHRP- Medicago truncatula cDNA clone pMHRP-45I5, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CCTGGCTCATTACTTTGGCAAATCATCCTTGGCTCAACGTACCTTAAGTAAACTGTCTTTGTGTTTTTACACGGGATAGACTTGGTACGATTATCCTAATACAGAAGGCTACTATGTGTCTTTTTCGATGTGAAAAGAAGGCACTAAAATTATGATTCTAGTTATAAAACTTGGTATGATTATCCTGTTACAGAAGGCTATTAAGTGTCTTTTTCGGTGTGAATAAGGCACTAATTTCTAATTCTAGTTATGTGTGGTTTTAGTAATGTCTAATGTGGTGTTTTATTTATGTATTTCTGACTTTGGGGAGCAATGTATCATATAACTATGATCTGTAGATCTTTGTTGGAAAAATAAAAGCACTGGTTTGTATTTTCACT | |||||||||
gi|7206473|gb|AW561047.1|AW561047 EST316095 DSIR Medicago truncatula cDNA clone pDSIR-31M23, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TATCTGAATGCTAAGCAATACAATGGAATCATTAGACGCCGGCAGTCCCTTTCCAAAGCTGTACTTGGTCACAAATTGATTAAACGTAACAAGCCCTACATGCACGAGTCACGCCATCTCCATGCAATGCGGCGACCGAGAGGATGTGGTGGTCGTTTCTTAAACACAAAGAAATCTGCCAATGGAGATGGTAAAACTGGAAGTAAAGTGCATAAATTCGGCGGTCAACAATTGCAGTTCAGTGGTTCTCAGAGTTCTGAACTCCTTGAATCTGATGTTGGAACTTTAAACTCTTCAAAGGAAACTAATGGAAGCAGTCCAAATATTTCTGGATCAGAGGTGACTAGTTTGTATTCGAGGGGAAATCATGACAGCTTTACCGTCGATCACCTTGGATCTTCTGTCCTCTCTATGGCAGACATGATCGATGGTGGGCGTGGTGTTATCATGCCGACCAAATGGGTTGCAGCTGGCAACTGCTGTAACCTTAAAGCTTGATTTTGTAAAGAATCAAGTGGGTTTGGTGTGATATTGTACCAAACCCTGTCCTTGATAAGACCAGATGACTATAGGCTCGTCCTGACGTTTGGTCTTAGGCAATCCATCCTTGGCTCATTACTTTGGCAAACTCATCCTGGCTCATTACTTTGGCAAATCAT | |||||||||
gi|260528073|gb|GT142423.1|GT142423 METC368TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GAAGTCTTACAATCTGAGGTTGGAACTTTAAATTCGTCGAAGGAGACAAACGGAGGCAGTCCAAATGTCTCGGGGTCAGAGGTGACTAGCATGTATACACAGGGAGTTCTTGATAGCTTTACTGTCAATCATATCGGATCTACTGTCCACTCTTTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAGCAGCTGGCAGACAGCTGCTGGAACCATAAGTTTCGATTCAGAAAGGAAACAAGTGGGTTTGGTACAATGTGAAATATTTTGCACCAAACTCATCCTTTCCGAGACCAGATGAAGAAGCTATGTTTCAGTTTGTTGTGTTTACTACGACAAATTTAGTTTCGGGAGACTACTTTTCCATCTGGTGCTCAGGCAACTCATTCTTGGCTTATTCTCAGGAAACTCATCCTTGGCTCGTAATATTTAGTAGTATTGTCATTGTCTTTCCGCGCAGGCTTGCCGTGGCATGGTAGGCATGCTAATGACTTTGGTATTTTCATGCAGTTATAACTATGATGTGTCTTTGTTTGTTGTTAAAATAAAAAACATGAACTCTAGCTAGGTGCATGTGTGTGTTTTTAATCTTGTCTACTAAGTTTGGTGTTTTGTAATGGATTTCTGACTTTATGGAGTAATGTATTGTAACTCTACTAAGAAGTGTAACATTTTATTTCTCCCTCTCCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|83664713|gb|DW015121.1|DW015121 EST1224082 MTY Medicago truncatula cDNA clone MTYA123, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CGGCCGGGGTGTCATCTTTGGCTTCATTCATGTCCAATCAAGAAACAAGTTTTGTGACTTTGGGTCAGCGGGTTTTAGCAAATCCTTTGAAAGTTCGTATGCATTATGGTCATCCTGATGTTTTTGATAGAGTCTTCCACATAACCCGCGGTGGTATCAGCAAGGCTTCCCGTGTTATCAATATTAGCGAAGATATCTACTCAGGATTCAATTCAACCTTGTGTCAAGGAAACATTACTCATCATGAATATATTCAGGTTGGTAAGGGAAGGGATGTGGGCCTCAATCAGATTGCACTATTCGAGGGGAAAGTTTCAAGTGGTAACGGTGAACAAGTCCTGAGTCGGGATATATACCGACTTGGGCAACTTTTTGATTTCTTCCGGATGATGTCTTTTTACTTCACAACAGTTGGATACTACTTTTGTACCATGTTAACGGTGCTGACAGTTTATGCCTTTCTTTATGGAAAAACGTATTTGGCACTTTCTGGTGTTGGTGAAATAATTGAAGAAAGGGCTAAGATAACCAAGAATACTGCTCTGAGTGCTGCTTTGAATACACAGTTTCTCTTCCAAATTGGTATATTCACTGCTGTGCCAATGGTCTTGGGCTTCGTTCTTGAACAAGCTTC | |||||||||
gi|260526138|gb|GT141448.1|GT141448 METBS20TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): TCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAATGAAAATGGTGGTAGCTCCTACCATAATAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGTAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAGACCCCCCTTCCTGCATGGGAGGGATAGATGCTGAGGTTGGTTTTGTATATCCTAGTGATATATTTGGTGAATGAGTACCTTACCTTGGTTATCTTCTTGGCAATATATATGCCGGCAAATCATTCTTGGCTTTTGTTCTTGTGTTTATGGTGTGAATGATATAATATGGGGGGGAGAAGAATGGTGATTGGGGTATATGATTTCTGTTGAAGTCTCAAGCAATCAATCAATCCTTCAATCTTATCTCATTTTTGCATTTTGTACAGAGTTTTAGTGGTAGTCAACTTCAGCTGATATGGATGGTCAGGTCAGAAGACTGAAGAAAACAAACTCTTTTATGTAGTACCAAAACTCTCTTGTTTCATGGGTTTGTTCTGTAAACTTACCTGGTTGGTTGTTAATGTTAACATGAGACATCATTATAATACAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|83665144|gb|DW015552.1|DW015552 EST1224513 MTY Medicago truncatula cDNA clone MTYA667, mRNA sequence GAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CGGCCGGGGAGCACCACAATGCAGTGGAGGACTCACATTTGGCGGAACAAAACAACGTGCTTCTGTTGTCCGGTGATAGTTTCACCGAAAAGGCAAATCATCCTTGGCTTAATCACTTCGGTTTCGGTGTTTTCATGGTAATTGGTCACTTATTTTGTGCTTTTCATGTGTTCTTGTGAATTACTCTTTTTGAGAGAAACTTCAAAGTGTGTGCATTAGCACTTGGAACCTTTTTATTACTTTCACAAGTATTTTAAAATTGGTATTGCTTACACTTGTCTTTTGGACTGGATTGGAATAGTTTCTGCATGAAACTTTTTTTGGTTTGTGATCAATATATAATTTGCTTTGGTTTG | |||||||||