| mature miRNA: GGGCTTCTCTTTCTTGGCAGG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|157982267|gb|EX530539.1|EX530539 MTGland_A068_2007-06-27/MTGlandA068_C10_038_1 Medicago truncatula A17 glandular trichome Med GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): AGGTACCTCGTATATAATTCCCTCAGCTTCGGATAACTAATGTACGCATTATACTCTGTACCGCAAATTTTCTCTGCCTCCTGCTGCGACACACCCAAGTGACTCATCAGTAGTGTCGCTCCCTCATGTCTCAACATCTTCTTCCCATGGCTCAACATCTGCCCTTCAATCTAAAGATGCATAAGAGATGCGACATCATCCAAAGTCACAGTCATCTCCCCCAAGGGCATGTGAAAAGTGTTGGTCTCGGGATGCTACCTCTCGCATAGAGTCATCAGCAAAGCATGAGGCACAGTGGCGTAGCCCAGGTAAACCAAATCATGTAACCCACTCTACGTAAGAGGATCCCAAAACCAATTCTGATTCCCGTTTGGACGTCCGAGACTCAAAATATTAGCCCCATGATTAATCGGTTTTACAACACGCAGCTTACGAACCTGAAATAATAGAAAAATAAACATAGTTTAAACAATTTATACATTAAACAATGTAAACATTTAACTAAACAAAATAAAACTTAGCAAATGCAAAAATAAAACATAACACATGTAAACCTTAAAACTTAAGAAAAACACATAACAAAAAAATTTAAAATCATAACTAAACGTAAAGAGAACAATAAAAGTTGAAATAAAGAAAATTTAAAGAAAATAATTAAACATAAAGAAAATAATTAAACAAACACACATATTAAAAAAAATTAAAACATTAATTTTTGTTGCATATGATAATTTAAGATAATTAAAAATAACACTTCATTATCTGAATTATACCAAAGCGCCAATGTCACATGCTTGGCATAAGAGTGCAGCAGAGATATATCTTTCGGTCCTCCAGGAAAGAGAGGCTCCAAAGGTAACACTTCTGGGGCAGCCGCTGCTGCAATGTCATCATCGTCTGCTATATGTTGTTGCTCTGGTATATGATCATGGTCATACCCACCATCAGTCACATCGTGG | |||||||||
gi|20307592|gb|BQ165309.1|BQ165309 EST611178 KVKC Medicago truncatula cDNA clone pKVKC-7H1, mRNA sequence GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): CTAACAATCCTCTCTAGCTGTTGGGTCCCCTGTTAACTCCTGGTCCAAGTGGGGATCATCCCCTATTGGAAAAGCTGATTGGTCGGTAAATCCAAATGACTTCGGTCAAACACAGAGATCAACTTCTTTTGAGCATGGAAACAATGGAGAAGAGCCTGATGTAGGTTGGGTCCATTCCCTTGTCAAGGATCCCACACCTGAGAAGAAAGAGAAGCTTGCAGGTTCCGGCCCAATTCCATCCGTTGAAAAGAATCCCAATCCTCAAGCGGACGGCATTGATCACTCTGTTTTGGGAGCTTGGCTCGAGCAACTGCAGCTGGATCAACTTGTAGTCTAGTCATTCAATTTGACCCTTTTGCTACATTCTTGCTGTCATAGTTATTTAATTTAATTTCTTAAGGTGCATATTCTTTTGGTGAATTTAAGCCCCCCCGAAACATGGAAGGAGGTTGGCTGCAAAGTTCCTGAAGGATAATCGTTTTTTTCATTCCCTTTAATTTTTGTTATTCATTATTTC | |||||||||
gi|151390089|gb|EV259967.1|EV259967 MTYE228TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): TGTGAAAAAACATGAACATGTGAAAAAAAATTCACTAACGTTGTTAATAAGGATCAAAGGAGTAGCTACTACTGGTACTAGCTAGTTTCTTCTATATTTTATATAAGATCCTATTTTCACTCATGAAGAGACTCAACAACACTTCAGATTCTTCTTCAACACCTCTCATCACAACCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGATGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAATGTAGACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGACTAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGATAACAAAGCTTTTTCACAAGGAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAAAGCACAATCAATGTTTTGGTGAAGGAGGAGTTAACCATGCTTGAATCTTGTGATGAAGACAAGCATAACCCATCTTCAGAAACATCAAATCCTAGTTCAGAATCCAAAGATCACTTGGATTATGACTGCATAATCACAACAATGATGTTGGGTATTGGTGAAACTTCTTCACTC | |||||||||
gi|13369669|gb|BG450887.1|BG450887 NF093H08DT1F1074 Drought Medicago truncatula cDNA clone NF093H08DT 5', mRNA sequence GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): GAAAGATAAAAAAAAAAAAAGAAAAAAAGCAGAGTCCCTCTTCGAAGCTTATCTCAGCAGCAGAGTAACACCAATGGGGGAGGTATTGAAAGATAACTCTTTTTTTTATTATTCTTAAATCATTGAATTTTTCATTGGTTATATTTACTTTAATTTTTATATGGCGCTGATTCTGAGCAATTTTATTTTGTTTAGGAAGAGAAGAAAACAGAGGAACCGAAGAAGAAAGAAGAAACCAAGCCAGAGGAAACAAAAGATGAAGCTGCTGTTCCTGCGCCACCTCCGGCAGAGATTTTGCTGAAAGTTTTCATGCATTGTGAAAGCTGTGCTCGGAAAGTTCGTCGGTCGTTGAAAGATTTTCCAGGTGTTGAAGAAGTGATAACTGATTGCAAGTCTCATACGGTGGTTGTGAAAGGAGAGAAAGCGGAGCCATTGAAGGTTTTGGAAAGGGTTCAGAAGAAGAGTCATAGAAAGGTTGAGCTTCTTTCTCCGATCCCAATTGCTCCTGAGGAGGAAAAACCTGCTGAGGAAGAGAAGGCTGCACCTGAAGAGGAGAAGAAAGATGAGCCTCAGATTGTGATTACTGTCCTTAAAGTTCACATGCATTGTGAAGCTTGTGCAGANGAAATCAAAAAACGGATACTTAAAATGAATGGTACTGTCAATTNCAATATTTAACAAATTCAATTGATT | |||||||||
gi|148764715|gb|ES611409.1|ES611409 MTGland_A007_2007-04-03/MTGlandA007_C04_014_1 Medicago truncatula A17 glandular trichome Med GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGGCCTTCGTTATCTATCCTCTCAGTTATGGCCATGGCATCATCACTGCTTCTAGCATCACCTTCTCCACTCTCTCTTCAACTCCACGCTTCCTCTTCTCACCTTTCCTTCTCTCAATCCCAATCTCTTCACTCACCACTCATCACTTCATCATTCCCTACCCTCTCTTCAACCTTGTCTCTTTCACCAACCCCTTCTGTGTATTGTGGCAGANGTGATAGGAAAACTGCCAAGGGCAAACGGTTCAGCCATTCGTTTGGAAATGCAAGGCCNAGGAACAAGAACAAGGGTACAGGACCACCAAGGATTTATGCTCCACCAGATGCTACCAAGAAAGAGAAGCTTGAAGATAAGGAAGTGATTGAGATTGAAATTAATGAATCCCTTTTTCCTAGTTAGTTGATTTTAGTGTTGCACTGTAATTTTGAGAGTTTCACGATTTATAGTTTTTGACATATGGATTCCATTTGGCATATACTATTTGGATTTTGCTTGTTATCCTTATTTGAGTTCACTTTGC | |||||||||
gi|7568750|gb|AW694013.1|AW694013 NF071F10ST1F1090 Developing stem Medicago truncatula cDNA clone NF071F10ST 5', mRNA sequence GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): CTTTTGCTCTAATCAATCTCCCTCCATCCCCACTTTATATTTCATTTCATAGTCTTATAATTTCATTTACTACTATACCATAATAATAATAATAATAATTTTACTGTGTTAAAAGAAGGATAAGATAAGAGAACATTGAGATTTGTGTTTTTTTGTTAATTATTGTTTATAGTATTGAAGTAAGTTTATTAGTTTAATTGTGGGATTTTTCCTATGTGTATGAATTGTTTGATGGATGAAGTAGGAGAAGTTGTGAAAAAACATGAACATGTGAAAAAAAATTCACTAACGTTGTTAATAAGGATCAAAGGAGTAGCTACTACTGGTACTAGCTAGTTTCTTCTATATTTTATATAAGATCCTATTTTCACTCATGAAGAGACTCAACAACACTTCAGATTCTTCTTCAACACCTCTCATCACAATCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAAGAAGGATGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTAGACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGGTTGGCAGCCTA | |||||||||
gi|151391762|gb|EV261633.1|EV261633 MTYEL88TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): GTCGGGGGCAAATTCAGAAAGTCATTCTCCAGGATTTAGTGGCAGTAGCACTGTTGGTGGGATATCAGAATCAACAAAAGCACCCAATAGTACACAATCTAAATCCGAAATTAAATCTCTGGATGAGACAGTCATCCATGATACACATGGTGTCTTCAGGAACAATCCAAGTCAACCATCAAATGTAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAATAATGGTTATCCTTTAGCTGGTAGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAACAATGTCAATCTGCTCCACCTAGAGAGAAGAGATTCCGAAAGCCTACTCAGAGGTATATTGAAGAATCTTCAAATTTGAAGTCAAAAGAAAAAGTATCAACTACTGGTGTAAAACGTAAACGGCGGACTGTGTCATTAAGCAATGAGTTCCATACAAAAACTAAAGAATTGAAAGATATTCCAAGCGACGAGTCTAGTAGTGGGAATAGTGATGTGACACTTTCTGAGTTGCAACGCTGCAAGAAGCATCCAAAGAAAGAGAAGCTCGAGTATGACTATGAGCCTTTTTCATCGGAAGAGTCTGAGGATGAACATTTGACACCAAAAAGAGGCAGATCAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGTCTCTGAAGTGACAAAGTTGATTGACGGCATATCTCAATATGGAGTTGGTCGATGGACTGATATACAGAAGCTTTTGTTTTCTTCT | |||||||||
gi|13368971|gb|BG450189.1|BG450189 NF013E09DT1F1071 Drought Medicago truncatula cDNA clone NF013E09DT 5', mRNA sequence GGGCTTCTCTTTCTTGGCAGG EST sequence (targeted fragment marked with yellow): GCTCTAATCAATCTCCCTCCATCCCCACTTTATATTTCATTTCATAGTCTTATAATTTCATTTACTACTATACCATAATAATAATAATAATAATTTTACTTGTGTTAAAAGAAGGATAAGATAAGAGAACATTGAGATTTGTGTTTTTTTGTTAATTATTGTTTATAGTATTGAAGTAAGTTTATTAGTTTAATTGTGGGATTTTTCCTATGTGTATGAATTGTTTGATGGATGAAGTAGGAGAAGTTGTGAAAAAACATGAACATGTGAAAAAAAATTCACTAACGTTGTTAATAAGGATCAAAGGAGTAGCTACTACTGGTACTAGCTAGTTTCTTCTATATTTTATATAAGATCCTATTTTCACTCATGAAGAGACTCAACAACACTTCAGATTCTTCTTCAACACCTCTCATCACAATCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGATGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTANACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGNANAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGG | |||||||||