| mature miRNA: GTATAGCATCATGAGCAATCA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9672199|gb|AL372446.1|AL372446 MtBA50H09R1 MtBA Medicago truncatula cDNA clone MtBA50H09 T7, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTTATATTTTGAAGGAATTCCATGAATATTAGTTAGCTCGGAATAAGCGTTTACAAGTTGAAAGAGATGTAGTGAAAAAATTGTCATTGTTTCTCGTTCAAGTTGGTGTAGGGATACCAGAAATGAAGGACAAGAACGTAGTAGAATTGTACTTTGATGGAAATTATGTAACTGGAAGAAGACCAAAAAAATATTCTGCACTTCACGTAGTAGTCGTCGTCATGCATTAATATGACATAAACTTTCAATTTAATTATTTTCTGTTTCTATCTTTTTGTCACTTTCTTTCATTGCGCATGATGCTGTGTGTGTATGTCAGCGTTTGTAAGTTCAACCCGTGAGTG | |||||||||
gi|83665359|gb|DW015767.1|DW015767 EST1224728 MTY Medicago truncatula cDNA clone MTYA941, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGCCGGGAGATGTGAGGCATCCACCACTAGATCGATCTTCTGAGTGTAACAGCACTGCATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAATCTACAACTCAAGCTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCACTTCATCAGATTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTACATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGAGCAATGGATCAGGAAATACAAGGCAGCCACAATCAATTCAAGGAGAGAATAATTGTTTATTCCCTGAAGACCCTGGTCAGCTCCTAAATGAAAATGGCTTGAAGAGGAAAGCAGCTGAAGAGGTTTCTCAAGAAGAACCAAAGAAGGACCTAAAGAGTAGAGGTTTGTGTCTTGTTCCAGTGTCATGTACACTACAAGTTGGGAATGACAATGGAGCTGATTATTGGGCACCTGCCCTAGGAGGAGGCTTTCGGTAGAGACCAAATTTAAATTATTAATGGGGCAGCATATATAGATATTAATATATGCTTTAGTAAAAAAAAAAATATATTAATATATTCTAGCATGCATATAGGTAATTAAATTCATGGAAATTGATATAATATCATGAGCAGTCAATCTGCTCAAAAACCTACCAAGGCTGATTGCTCATGATGCTATACTTCATTATTCCTGAATAAAATGTATGCTAGATAAGCCATGATGAACTAGTATTTGCAAGCCCTAATTACCAATACTTTTTTATTAATTCAAGTGAAATCAAGCTAATTACTTTATTTTCATTAGCAAA | |||||||||
gi|151392849|gb|EV262727.1|EV262727 MTYEZ20TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GAAACAAAAGAAACATATTAATAACTTAAGCTATATTTTAACTGGGAAAAAAATATATTTTAGTTTGAAAAGTGTTCAATAATTATTAACAATGGCCTTAATCTCATCTTCTCTCACTATATCCTTTTCATCTAACCACTTTGATTGCAAGGCTTCTTTTCAATCATCAACTTCTTCTCCACAGTGTGTGAGCCTTTCCTCACTTCCATCACTCCCTTTGTTGTCTCAGAATCATGCACTGAAGACCACTCATCATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGACCCAACTGAACTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTTGGGACAAATATGATGATAGATATGCAGTGAGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTTAACTGGTTTGATCTCGGCAATTGATAGGCTTCCTTTGATTCCTGGAGTTCTTGAGTTAATAGGAATTGGTTACACTGGGTGGTTTGCATACAAGAACGTAGTTTTCAAGCCAGAAAGGGAAGAACTTATACAGAAAGTAAAGGAAACAATTACTGCAATAATTGGGAGCAATTAAAAGAATTGGACATTCTAAGATGCTGTTAACATGATAGAGTTCTATCTTGCAGCACTTTATTGAAGATTTCATCAGCATTCATTTTGTAGCCATAAGCTTTTTGACCAAACCTTATCCCATGTAATTTATTATTTTCTTGCAAAATAATTGTATCTTCTTATAAATATTAATCCAATTTAAAACAATCTTATTTTCTCAAAAAAAAAA | |||||||||
gi|83665814|gb|DW016222.1|DW016222 EST1225183 MTY Medicago truncatula cDNA clone MTYAE57, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGAACATTATCCAGATGCAAAAGAAAGAAAAAAAAAAAAGAGTGGTTCTGCTTCACTTCAATTTGTAGGAACAGGATTTCCACATTCATTTGCAAATTATCAAAGCACAATTGAGACTAATACATTAGAAACAAAAGAAACATATTAATAACTTAAGCTATATTTTAACTGGGAAAAAAAAATATATTTTAGTTTGAAAAGTGTTCAATAATTATTAACAATGGCCTTAATCTCATCTTCTCTCACTATATCCTTTTCATCTAACCACTTTGATTGCAAGGCTTCTTTTCAATCATCAACTTCTTCTCCACAGTGTGTGAGCCTTTCCTCACTTCCATCACTCCCTTTGTTGTCTCAGAATCATGCACTGAAGACCACTCATCATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAAAAGTTGACTCAACTGAACTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTGTATGATTCATAGGTTGTTAGAAATTGTAATGGAGTTTTTTTTTTCCTTTCTTAATGTTTATTAATGACCTAGAATTATGTTATTTATTTTGTTGGCATCATAGTGGGACAAATATGATGATAGATATGCAGTGAGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTTAACTGGGTTTGATCTCGGTATAAGTTATTTAAATGCTAATTTTATTTGCATTATTTGATTATCAATTTATTAGATACAGATGATAAATGTCATAAGCAATTACTTTCACTTGTA | |||||||||
gi|83668615|gb|DW019023.1|DW019023 EST1227984 MTY Medicago truncatula cDNA clone MTYBD89, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGACAAACAAAAGGACAAAGCATCAACTAAAGTGTGTCCCTCCCAAAGTCGAAAGGCGAAAAACAACTCCAACTCCAACACTGTCTCCTCAATCTCTCCAAAGTCCAATTCAAACACGACCACTCTTCTTCATGATTCTGTTTTATTAAAACCTGTTTTTTCCTTTCTTCCTCTAAATTCACAACATGGCTATTCTTCACAAAATTACATCTTTCTCCTCTCCAAATCCACCTCTCACTCCCCAAAACCAACGCAACCCCATTTCCTCAATCAACTGCACCACATCCTCCACCTCTTCACCCTTCACAGAAAAATACTCCACACAAAGATACCAAAGAGACCAATGGGTTTACCAGAATACCACCTCCTGTAATAATAATCACACCCCTTTTGGTGATTCAATAAGAGAACATGACATAGCTTTACAGCTTCCAGAGCTGAAAAAACTTGTTCAGGTATTGAAAAAGAAGAGGGAAAGTGAAGGGAAGTGTAGTGATGGGAAATGTGTTTCAGGGGATGTTTTTTTGGTTGGAACAGGACCTGGTGATCCTGAATTGTTGACTCTTAAGGCTGTTAGAGTTATTAAGAGTGCTGATTTGTTGTTGTATGATAGGTTGGTTAGTAATGATGTTTTGGATTTGGTTGGTCCTGATGCTAAACTTCTATATGTGGGAAAAACTGCTGGATACCATAGTAGAACTCAGGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCTACTGTTGTG | |||||||||
gi|14983657|gb|BI309330.1|BI309330 EST530740 GPOD Medicago truncatula cDNA clone pGPOD-11K8 5' end, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGAGTATATGAACATAACTGTAATTACTTCTAATAAACCTATGGAATATCTGATGGTTCCAATCCATTATTTAATGGCCTAAAAGTTCCCAAGTTCAATCTTGAAAAAGGTGGTGTCCATAGTGGTCATATTCAACAAGGACTCAGAGATCCTCTTTGCTTCGTCGAGAATGGCAAAGGAAAATGTCAGGATGGTTACACAAAAGAGGAAGGTGGTCCAGGCTCTGTGAGGGTACTTGTTGCTACAAAAGCAAAGCCTAACCGAGATGTTGGGAGTTCACTTGACAGGGAATATTTCATAGGATTTTTAGATGTTCTAAAGCAACCACGACAAGCAGGGAGATACAACTTCACTACTCAGTTTCCCTACTACAAAGAAGTAACTTACAAGCCAAACTTTCAAAATAAAAAATTGGGAAAACCTGTTGTTTTTGACATGGACATGAGTGCAGGAGATTTTCTAGCTCTATTTTACCTCCTTAAAGTGCCTGTTCAAGTAATCGACCTTAAGGCAATCATTGTGAGTCCTACTGGATGGGCAAATGCAGGCACAATAGACATAATTTATGACATACTTCACATGATGGGTCGTGATGATATAC | |||||||||
gi|9666527|gb|AL366774.1|AL366774 MtBA10A12R1 MtBA Medicago truncatula cDNA clone MtBA10A12 T7, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTGGGCTCCTGCTTTTGGTGGGGGATTTCAGTAGATTAATTGGTGTAGCATATATTCATAAATATTTGGGAGCATACAAAGAGGCGGCAATTAATTGGTGGAAATTTGTATAACATTATGAGCAGTCAATTTGCTATATATCAAATTATCTAAGGCTGATTGCTCATGATGTTATGCAGGGTTCCTTAATAAAAATGTATGCAAGTATATATATTTGCAAGCCCTTGTTAAGAATCATTAATTTGTGCAAATAATCAACCTTTAATTTATTTTCATTCCATTAGCTTAATTTAGAAGTCAGATGCTAGATTTAAATATAGATTTATGGAATAATTGTATGATGAGTCATTTGAATGCTAAAACTTCTTTGAAACAAACTTTTGTATCTTTATTGTTACTGTGAGAATATTTTTATACGCAAAAATGTTTATTGAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|83665960|gb|DW016368.1|DW016368 EST1225329 MTY Medicago truncatula cDNA clone MTYAG33, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATCTGTGCCACCGTCTACCACCATAACAGATAGAGGAAATGAGGCAGATGAAGCCGTTGGAGTTGTTTCACGATTTGGTCAAAACAACAAAGAACGAACGTGGAAGGTTGATGGGTTTAGATGTCGGTGATAAATATGTTGGTCTCGCTCTTTCTGATTTTGATAACAAAGTTGCTTCTCCTTTCAGTGTTCTCGTCAGGAAGAAGAGTAACGCTAGTTTAATGGCTGCTGATTTTAAGAGTCTGATCTCTAAATATTCCTTGAAGGGTCTTGTTATTGGCGTCCCTTTTGAATATAATCTGGTTTCTCCTGATGCTGTGCAAGTGAAGGTCCTCATTGATAACCTCCGTAGAACAAACATGCTTGAAGGTCTAAAGTATACATATTGGAATGAGTGCTTCACATCAAAGAATGTGGAGTTATTCTTAAAGCCTTTGAACTTCAAAAATGCAGTTCAGTCTAAAACTATGCTAGACAAGTTTGCTGCTGTAGGAATACTTCAAGGGTACATGGACTATGCCAACAGAAAAGCAAAGCAGAGAGCACTGGAGTAAGGCTTCTTAATAGTGTAGAGGCATGCACCAGAAATAACATCTAGAAACATCTTAATTTAAAGGTAGTGTGATGGCATGACATACGATTTAATCTTTTCCTATATTTGTTTTCTCCATTCAAGACCTGAAATGAAAATGGAAAATACTAGTTATTACGACTAGTTTGCCACAAGAAAGCGAAGAATTGATCTGTGCCCCTCATCTTA | |||||||||
gi|9682265|gb|AL382514.1|AL382514 MtBC07E11R1 MtBC Medicago truncatula cDNA clone MtBC07E11 T7, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): ATTGATGATCAACCATAATTAATTAATGGCATGCATATATATAGCATCGTGAGCAATCAGCCTTTTCATTACCACAGAATGACTGCTCATGATGTTATATCATCATCCACAAATTTCCTTGCTTCATATGTTAATTAAAATCCACTTCCAAATGCTGGTGCCCAATAATCAGCTCCATTTTCATTTCCAACATGTTGTGTGCATGACACTGGAACCAAGCACAACCCTCTACTCCTCAAGACCTTTGCCTTATTAGAGAGAGA | |||||||||
gi|57500120|gb|CX531401.1|CX531401 s13dNF30F02MJ016_256753 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGCACGAGGGCAACTTCACTACTCAGTTTCCCTACTACAAAGAAGTAACTTACAAGCCAAACTTTCAAAATAAAAAATTGGGAAAACCTGTTGTTTTTGACATGGACATGAGTGCAGGAGATTTTCTAGCTCTATTTTACCTCCTTAAAGTGCCTGTTCAAGTAATCGACCTTAAGGCAATCATTGTGAGTCCTACTGGATGGGCAAATGCAGCAACAATAGACATAATTTATGACATACTTCACATGATGGGTCGTGATGATATACCAGTTGGTCTAGGAGATGTTTTCGCAATGAATCAGAGAGATCCAATATTCGGAGCCGTTGGAGGCTGCAAGTATGTTAAAGCCATTCCTCATGGGAATGGAGGTTACATAGATTCCGATACTCTTTATGGTCTTGCTCGTTATCTGCCACGAAGCCCAAGAAGGTATACAGGAGAAAACTCTGTGAAGTTTGGAGCCCCACGGGATACGGATCACCCAGAACTTAGACAACCACTAGCTATGGAAGTTTGGGAGTCTGTATTGCAAACAATGAAACCAGGGTCCAATATTACTGTACTAACCAACGGACCCTTGACTAATTTGGNCAACGTTGTTTCAGT | |||||||||
gi|8747430|gb|BE204154.1|BE204154 EST396822 KV0 Medicago truncatula cDNA clone pKV0-14L7, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TGCAGAAATGGAGTATATGAACATAACTGTTATTACTTCTAATAAACCATATGGAATATCTGATGGTTCCAATAGACATAATTTATGACATACTTGGCATGATGGGTCGTGATGATATACCAGTTGGTCTAGGAGATGTTTTCGCAATGAATCAGAGAGATCCAATATTCGGAGCCGTTGGAGGCTGCAAGTATGTTAAAGCCATTCCTCATGGGAATGGAGGTTACATAGATTCCGATACTCTTTATGGTCTTGCTCGTTATCTGCCACGAAGCCCAAGAAGGTATACAGGAGAAAACTCTGTGAAGTTTGGAGCCCCACGGGATACGGATCACCCAGAACTTAGACAACCACTAGCTATGGAAGTTTGGGAGTCTGTATTGCAAACAATGAAACCAGGGTCCAATATTACTGTACTAACCAACGGACCCTTGACTAATTTGGCAAACGTTGTTTCAGTGAAAAATATAAGCTCTAGAATTCAGGAAGTTTTTGTAGTGGGGGGGCACATCAGCAGTAATGCAGAAGACAAAGGAAATGTGTTTTCAGTTCCTTCTAACCAATATGCAGAATTCAACATGTTCCTAGATCCTTTAGCCGCCAAAACAGTGTTCGAATCAGAAGTTAAGATCACACTC | |||||||||