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mature miRNA: TAAGACATCAGCTATAAGCTA
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|7766764|gb|AW776951.1|AW776951 EST336016 DSIL Medicago truncatula cDNA clone pDSIL-16J16, mRNA sequence

TAAGACATCAGCTATAAGCTA
|||.||||||||||||| ||
ATTTTGTAGTCGATATTGAAT

EST sequence (targeted fragment marked with yellow):
TTACTTGGGTATGGCTGTCCAGTGGGAGGATCGGTTCTATAAAGCCAATAGAGCTCACACCTACCTGGGAGACCCGGCCAATGAGAAAGAAATATTCCCCAATATGTTGAAATTTGCAGGTGCTTGTGGTATACCAGCAGCTCGTGTGACAAAGAGGGCAGACCTTAGAGCAGCGATTCAGAAAATGTTAGATACCCCTGGCCCCTACCTGCTTGATGTTATTGTACCGCATCAGGAGCATGTGTTGCCAATGATTCCTGCTAATGGATCCTTTGAGGATGTCATAACCGAGGGCGATGGCAGGATAAGTTACTGATTTCCCAAGCTAGGTTCATCTTGATACTAGTTTTGTATAATAGTAAGCCATAATGTTATAATTTTTATTTTAGTGTTCGTAATAAGACAAATAAGACAAACTTATTTGTTTCTCTACAATTTCCATTTCCCTTATAAATATTCCATACTGTTTTGTTCAAAAAAAATAAAATTCCATACTGTTCTTATAAGTTATAGCTGATGTTTTAATTGGTATTACTTACGTTCTTTATGTT