| mature miRNA: TAAGGGACGGAGGGAGTACCC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|157983863|gb|EX532135.1|EX532135 MTGland_B032_2007-06-24/MTGlandB032_E12_044_1 Medicago truncatula A17 glandular trichome Med TAAGGGACGGAGGGAGTACCC EST sequence (targeted fragment marked with yellow): CGGCCGGGACCTAGTTTNNAACTATAACTGTAGAAAAAACTACCTAATCCTAGCCATACAATCTAAATATCGAATATAGCCGTTAGAACACTTGACCTTATCCGGAGAAATAACTGCTTTCGAGATCCCCTCGTCCATCGAACAAAGACGCGCATCTTCGATTCTCGTCCAAGGAACATAACTTCGATATAACATGCAAGGTCAAGTCCATCTCGTCGGGTCAACCCTTTTGACCATATTAAATGATACTCCCTCCGTCCCTTAATAAGTGACCCATTTGGAATTTTTTTAATTTTGACCTAACTGACTTTGACCGTATTTTTCAACTAATATACAAAGATAAATAACATCATATAAGATGTCGTTAGATTCGTCTCGATGAGTATTTTCAAAATATCAAATTTTCATAATTTTTTCCAATATATTATTCAAGATATTTAAACTCAAAATTACGCATTGGTATGCGTAATTGAGTCAACTAGGTCACTTATTAAGGGACGGAGGGAGTACCCTTTTACAAATATTTGCTAACAGATACATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCNNNT | |||||||||
gi|157983263|gb|EX531535.1|EX531535 MTGland_B025_2007-06-01/MTGlandB025-_B05_023_1 Medicago truncatula A17 glandular trichome Me TAAGGGACGGAGGGAGTACCC EST sequence (targeted fragment marked with yellow): TAGAATTTGCCTTATAAGATACATTCAGTAATTAGTAGTACATTCATAATTGTACCCAAAAAAAACAAGTACACTCATTACGAGTATAATAGGAGTGTGTACACAATGATTATATAGTAATGCGCTCTAATAAAAATATCACTCATCATAAATAGCTTGTATTTGCGCTTGTCCAATCTATCATCGGTGGAGAGAAATTTGTCTGAACCTAAATCGTATGTGTGTTCATTTCGGCTGACATGTACTCCCTCCGTCCCTTATTATAAGTCGTCTTTTTTTAAAAAAATTTGTCCCAAAATTTAAGTCGTTTTATAATATCTATACCTCATTAATTAAATTTTTCCCAATTTACCCTTAACAGAAATTTTGAGCATTAACAATGAATAGTCGTTTTATATTCATGCACTTTTGACTATGGAGTAAAAACAATGAATAATCGTTTTGAGCATTAACAGAAATTGGCTACTTTTCAAAATTAGTTTTATTTTCCAAAGCACATACTCATTTTAAATAATTTTCAATTCTCTTTGCCACCGTCCCATTCATTAATAACAATGGTGCTATATTGTTAGTTCCCAAAATAAATATTGGTGGGAAAATATGGAGGGAACATTGAAATATCCAATTTTTATTCATCGGTTCTATTGTG | |||||||||
gi|157979741|gb|EX528013.1|EX528013 MTGland_A036_2007-05-23/MTGlandA036_A11_048_1 Medicago truncatula A17 glandular trichome Med TAAGGGACGGAGGGAGTACCC EST sequence (targeted fragment marked with yellow): TNACGGCCGGGCTAGTANCATTATAAACTTCTGTTCATTATACAACATTTGAAAGAAATTAAAGGTCTTAGCCAAATACAATTAACATTAATGGTTGAACCTTCCGCTCACAGCACTTGGCATTAATACATAAGTTTTTAAATATCATATAGAATCCTTAGCGAAGACTTTTCTTAATATTTTTTTATTTAGATTTGTGAAACTAAACTGAAATATGAAGGGTAACCAAAAAAAAAAACTGAAATATATGAAGGGCANAGAAACACATCAAAATATTAAAATCTTGTCTCCACACCAATATTTCATTTCATTTTGTCATTCTTTTGTTATTTGTACATTGGAACCATTCATCAATGACTTGTTACTGATGATAACATATTGTTCTAAATATTCTTAAATGATACTCCCTCCGTCCCTTAATACTTGACGCAGTTGACCTTATTACGCATGTCAATGCATAACTTTGAACTTAAATATCTTGAATAATATATTANAAAAAATTATGAAAATTTGATATTTTGAAAATATTCATCGAGACGAATCTAACGAAAACTTATATGATGTTATTTATCTTTGTATATTAGTTGAAAAATATGGTCAAAGTCATTTAGGTTAAAATTAAAAAAATTTAAATAGGTCAAGTATCAAGGGACGGANGAAGTATATTAATAGGAAAGAGGTGGCCCTCAATTATTATCATTGGGTTCAGCAGTTCAGCTTCATTTTGAATAGCCANNNGAAAAGAAATTTAAGGACTAATTTAATTCTCTTTTTTTTTGAGTTTATATCGATCAAGTCATTNTCTCA | |||||||||
gi|8748078|gb|BE204787.1|BE204787 EST397463 KV0 Medicago truncatula cDNA clone pKV0-18M18, mRNA sequence TAAGGGACGGAGGGAGTACCC EST sequence (targeted fragment marked with yellow): TCTGTTTTCACCCTAATCCAATGATCATTTTGGTCTGCAGTCCAAACAAGATCATGTTTCTGTTCTAGTTTTCATCTCCATGTAATTCAGGTCTTTTGGCACTAGTTGAAAAATCTTTACTTTATTGACTGTTTACAGTATTGTCGTATATTATTATTAATTAATATTAAGGGTCTTGTTAACCAGTGCCCCCGGGGCAATGGTTAAGAAACTAAAAGTGGAAAGAAAAGGCATGATTTACATTGAAAAGAGCAATATTTTAACTTTTAAAAAATAGAATACACAATTTCCAAGAAATATATTTCCTTTTCTAATTCCTTAACCAGTGCCCCGGGGGCACCGGGGGCACCGGTTAACATTTCCCTAATATTAATTACTCCCTCCGTCCCTTAATATAAGCACCTATTGCGTTTTTCACTCTTATTAAGAAAAGTTGGTAGAAGTTGGTGTGTAGTTAATGTGTCTATTTTATGTATGAATATACCTAAAATGCCCTTTGTAAATATGTGTAGTAAATTGTGACATTTCCAATTCCAAAGCAGTTAGTGGTATTAATCAGGGGTTTATTTGGAAAAGAAG | |||||||||
gi|57494266|gb|CX525547.1|CX525547 s13dNF24D02AT026_479728 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TAAGGGACGGAGGGAGTACCC EST sequence (targeted fragment marked with yellow): GGCACGAGGCAAAACTCGAATTAATACAAGGAAATTAAAGCATACTAAGCATTTTACATTCGGATTCAGATTAGATGCTTATATGTAAAAACAAACATGGTACACCAGACCGATCAGATCACGACACGTGATGATGATACAGACACGTGGCAGACGATCAACAAAACAGGAAAATATTTACATGCAACCAAGGAAGATTTGGTGGCCACATCAACGGTGCTTGCTCCTTGTGTCCCCACTGTACATCCTGCAATCACATACAATCCAATTAATTTTTATATGTTTGTGATGAGATAGATTTAATTAAATCTATGTAAATATAAATTACGAACAGTAATACTCCCTCCGTCCCTTAATAAATGACTTAGTTGACAATATGCATTATTAACTTGATATACTTTGACCATATTTTTCTACTAATTCACAAAGATAAATAATATCATGTAAGATGTTGTTGGATTCGTCTCGATGAGTATTTTTAAAATATTAAATTTTTATAAT | |||||||||
gi|157983401|gb|EX531673.1|EX531673 MTGland_B026_2007-07-02/MTGlandB026_H02_001_1 Medicago truncatula A17 glandular trichome Med TAAGGGACGGAGGGAGTACCC EST sequence (targeted fragment marked with yellow): CGGNNTTACGGCCGGGCNTTATTGTGTTGAGCTAAGTTTGGAAATGGCGTCTATCGTGGGGAGACGTTGCAAATTCACATTTACAATTTCCTACATATAATGATACTTAATCACGGAATTTCATTGATCACAGGCCATGTAGGTATTTCATCAATTAATGCAATACGTAATTACTATTCAATTATTGGATCGGAAACAATCAAATAATAATTGGTGTTGAGAAAGAACTATTAATGATATGGTACTCCCTCCGTCCCTGAATAAGTGACCTATTTGTAAAAAATATTTGTCCCACAATACTTGACCTTCTCAGATTTCTAAGCAAAATTTGACAGATTTACCCCTTATAAATACTTTTTGTGGTCCCCATGTTAAAGTTTGTAGTGGAACAAAGAAAGTAATCATTGCTTAAAAGTGAAAAAGTTTCAAAATAATGACAAGGGCAACTCAGTAAAAGTATCACTCTCTTTCTTTCATCTTTACACTTTTCTTAATCTGTGTGAAATGGTCAAATAGGTCACTTATTAAGGGACGGAGGGAGTAATTGTTTTCAAGTATCAGTCAAAAACTAATTATCACATTGCAGTTTGAATATTTTTTTGGATAACTTGTGCATTCAATGCGTTGGAAATTGAAGTATTGGACTTTTTCAATGCATAATTTCTTAATTAGAAATCCTTAAAGAGTGTCATTAGAGCACTCATTAACAAAATCCTATTTTTTTTTAGAGCTAGTGCAAAAAAAAAACTTATCAGAAGGAAAACAATACAAAAACAAAAGACTAAGCAACTAAGTGCCTAAAAACTCCTGAAGAGTCGGCGAACAAGATAGAATATAGCTTCNGANGAGAAGANGTTCATATCTTCAAAGCNTCAATTTGATTTACTATCTTCTACTAGTATTTATTAGAAAAAANTTTNTGTGNAGNNNCTTTTAAATAAANTTTAANTGAAANTCATCGTGAGCNTNACTNANTTGGTATGAANANGCANANNTNTGNNNG | |||||||||