| mature miRNA: TAATCTGCATCCTGAGGTTTA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57500581|gb|CX531862.1|CX531862 s13dNF82E04MJ023_257665 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): GGCACGAGGCGTTCTCATGAGACATCTTTTATTTCTCTCCCTACTATTAGTTCTCAAAACATCCCTCAAGTCATGAACAAGATCAAAGGGATTATAGGTTGTGACTTTACCTCATCCATTTCTAATTCCAACCTGGTGAATAATCTCCAAAATATTTTAGACGAGATGGAAAACTTAAAACCCAATCTTGATAGTTCTGAAAGAGGTGTTATGGTCTCTCTTCAGATCTTGTTGAACAATCTGCGTTCTGATATTCCTATTATTGAGTCGACCCTCAATAATTTTAACCAAGCCGAAGAACTACAAAGGCTCGCTGATGATCACTTGAAGTACATTCGCAAAAAGATTAAAGACAAAAATACCAACCTTGTTAAACTTTGGGATGAAGATTTCCACATTGATCAACGCATTTGTTATCTTGAACATGAACTTCAAATTGCTAGGAATAAAAAGGCAGATATTTCAGAAGCCCTTGATATGGAGATGGCCTCTTTCTGGGAGATGGATGCAGAGTCCAAAAAAGCAGATGCTGAGAACTCTCATTTGCTTGTTGAGTTATTGGTTATGAAGAAAGAAGTCAATGGTGTTATTGTAAAAAGAAACAACTTGGAAGAAGCATGGAAAGGGATACAATCCCTTTTTGATTTGTAATTT | |||||||||
gi|209565089|gb|GE349385.1|GE349385 MEUAB15TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): TTTTTTAGGCCTCACAAACTATTTAAAACCATTGGATTGGTCATGTGTACCTTTACCCTGCATAAGCGCCATTTTTAGTGACGACTTCTCGGGTTACCTCGTGAAGACCCGTTGAATCCTTGAGCTAAAACCAACGTGATTCACGGATTGACATTGATGAGATCACAAAATTTACTATAATGTGTCGTCGGTGCAGGTTTAAACCGGTGTTCATCTGATTTGATCCATTGAAGGATTGACTTGGGTCTTTTCTGTAACATTGTATTCTTTTAATTACAAAGAGTGAGGATCTTGAAATTAGGACTCAGGATGTAGATTTTTTTGTTACCAACACATTTTTTGTTTGGTGAATAAGTAGAAAGAAAATGTTAGAATCTATTGGTAGATTTGTACATTTTTAGTCATAGATTTGCTTAAAAAATAGTCTATGTATTCGTTGAAAAGGAGGGTAGTTTTGGCTTTGGTGGTTTATTGTGGAACTTACTTGCATTTGTAATGTAAAATTGTGTAATCAGTTTTTGCAGTTATTGTGTGGTGGTCCGGTGGGCAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|13779607|gb|BG644495.1|BG644495 EST506114 KV3 Medicago truncatula cDNA clone pKV3-37O12 5' end, mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): CTTCCTTTCCTTATTCTAAGTCACTCCTATCACCTCATCTTGACCACCTTTCAACTTCATATTGTTTTCATACATAATTATGGATTAGAGTTATATTATACTAACTTAATGTCTTAAGTAAATGGCTTTTTATTCTCTTCTCTTTGTGATTTATCCATTCACACTTTCTATTTTGTTCTTCACTTCTTAGTAAATATGGTCAAACCATGAAGATATCAACTTTTTCTTAATCTTGGCATGTTCAAGCTCATGATCATGTGAAGTCTTCTAGATATTTAGCAATAGGGTGTGAACTGTGAAGTCTTTTTGTTCAGCAAAACATTATTCAGAGAAAAAGAAAAAACAATTGCATAAAAATGAGTTATAGTGTGTCTAGTAAAAGATCATTCATTGGTAGTGGAATTTACAGAAATTCACCAAATTCCTCCAATGAAAATTTGAGAATTCTACAATTGTCACTATCTGGTGACAATGGTTCCTCCTCAGGTCAAGAACCGCAGGATGCAGATTATGTTCTACTACCATTACCATGTCTTAGTGATGAACTAGAGACAATGATATTGGCAAGGTTTCCAATTTCAAAACACTGGAAAATGTGTTGCTTAAACAACAAGTTTTTAAATCTAATGAAGAATGGTGAAATCTATAAGATAAGAAGAATGATAGGGTTGAAAGAACCATCAGTTTTTATGTTAGCAAGTGGTGGTGAAAGGAATTGGTGTGTGTTTGATGGTCAATTCAAGTCATGCAGGAAGCTACCTATTATTTCATCTGATTACATATTTGAAAATGGTGAAAAAGAGTCC | |||||||||
gi|22089991|gb|AJ499548.1|AJ499548 AJ499548 MTGIM Medicago truncatula cDNA clone mtgmacc120005e09, mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): ATTCTTTCTGCCATGTGCTTTCACTTTCTTGGTTATCCAGCCAGTCAGATTCATGGGATGACATAGAGTTTTCAGATGATGAAAAGCTCTGAACTAGCTCAGTCTCGTTAGCAACATTCTTCTGAGAAAAGTGTCTTTTAAAAGATGGACTCAGATGTAAGTTGTTCAGTGACAGTTCAATTTCATTGGAAGTTGATGAAAGTTCTTTTGACAAATTTACAGTTCCGTCTTTGAAAATCAAGTTATAAGGTCTTTGGCTAAAGGGCTCTGGTAGTGCGGCCTCTGGAATATCAGTCACCTCAGGATGCAGATTAAAGAAATTAATCAGCTTGGAATTAAAATATCGAATAAGAGCCAAATCAGCAGACTGTTCGGAATGATCTTCTACAACGTCAAATACCAAGGTTATCTTCAAATCCGGCTTCATACACAAGCTCTTCTTATCCACAACAACCACCTTTACAATTTCTATACCTTTGGGAAGTATATACTTCATCTGTGCTA | |||||||||
gi|209566404|gb|GE348194.1|GE348194 MEUBF76TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): ACCTTTTTCTTTGTTTTGTTGAATATACATATATTTTTGCACAAGAAAGTAGAAAAACCCTTGTCTTGAAATATTTGTTTTTTAATCTAAATCAACTTTTGTGATGTTTTATTCCTATGAATGCTGATCAAAATCTCAGGATGTGATGGCTTTTGGTTTCTGTGCTTGGAGTTCCTTCATCTGGTTAAGCAGCATCTTTTCTTCATATAGGAAATTGATTATGAGCTGTTAAGAGGATTTTGTAGAACAAAGAAGGGTAAAAAGAGAAGCATTTGCTTTTGAATGATCTATTATGACTAATAAAAAAGCATTACCAGTTCCAAATTTTGGTAGTGACTTTTACTTTAGTTACCACAAATCTCCTTCACAAAAAATGAGAATTCTAGAGTTGTTACCACACTCCGATGGCAACGGTTCTTCGACGGAAGAAGAACCTTTACCTCAGGATGCAGATTATAATCTCAGTCTCAGCGACGAGCTAGAGACATCGATCTTGGCGAGATTTCCAAGATCACAACATTGGAAACTATCTTTTCTAAACAAGAGATTTTTAACTCTGATGAAAAGTGGCGAGATCTATAAAATACGGAAAGAGTTAGGACTTAAAGAACCATCCGTTTTCATGTTAGCTAGCGGCGAAAGCAATTGGTGAGGTATGGAATGGCCTTTCAAATCAAGCACGAAGCTTCCAAGATCCAATCAGATTACAGCTTTGAATTTGGTGATAAAGAATCATT | |||||||||
gi|89244676|gb|DY616463.1|DY616463 AC1958 NOLLY Medicago truncatula cDNA 5', mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): GTCGTTCTCATGAGACATCTTTTATTTCTCTCCCTACTATTAGTTCTCAAAACGTCCCTCAAGTCATGAACAAGATCAAAGGGATTATAGGTTGTGACTTTACCTCATCCATTTCTAATTCCAACCTGGTGAATAATCTCCAAAATATTTTAGACGAGATGGAAAACTTAAAACCCAATCTTGATAGTTTTGAAAGAGGTGTTATGGTCTCTCTTCAGATCTTGTTGAACAATCTGCGTTCTGATATTCCTATTATTGAGTCCACCCTCAATAATTTTAACCAAGCCGAAGAACTACAAAGGCTCGCTGATGATCACTTGAAGTACATTCACAAAAAGATTAAAGACAAAAATACCAACCTTGTTAAACTTTGGGATGAAGATTTCCACATTGATCAACGCATTTGNTATCTTGAACATGAACTTCAAATGCTAGGAATAAAAGGCCGATTTTTCAGAAGCCCTTGATTGGAGATGGCATCTTCTGGGAGANGGTGCNNAGTCCAAAAGCCGATGCTGGAACCTATTGCTGGTG | |||||||||
gi|57495389|gb|CX526670.1|CX526670 s13dNF25D05AT046_513852 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): GGCACGAGGATATTTTATGGGGTTTGTGCCCTTGATAATTCATGTGCTATGTTAGTGAGAAGCCGTTGTTGTATTCTGTTAGCTGTGAGGCCAAGTATACCGAGTAATTAGACGTGAGGCGCACCAATAATAATAGTAATATCTGTAACTGTTATTAGCCTTAGCAATCACCATATATAGCCATAGTGGTGTCTTGATTTATCTATATATAAACCTTTCATATTCTACAGGATGCAGATTATGTAGTGAACTGAAATTGAGACTCTCTACACACGAATGTGCAGTATGATGATGAAGAGACACACAATAATATTCCTAAGAATCATTTTTCTTGTGATGTTTCTTGGGTGGCTATCTGTTTGGATCTTGTTGCCTACTAAGATTTACAAAAAGATCTGGGCTCCCATGCTACAAAACAAGTTCAATTCTACATACTTCAGAGGGCAAGGGATAAATCTCCTGTTTTTCACATTCCCTATGATGTTCATTGGAGCTCTGAGTTGTATTTATCTCCATTTTCATCAAGAAAAAATAACAGAAAAGTTGCCTTCCAGAAGCGGCGGCGCTCTAAAGAGATGTTTAGGCTTCCTGAGACGTCCATTCCTGGTTATGTCTCCAATTGGAATTGTTTC | |||||||||
gi|161108073|gb|EY476819.1|EY476819 METAV56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): CTGGTTAAGCAGCATCTTTTCTTCATATAGGAAATTGATTATGAGCTGTTAAGAGGATTTTGTAGAACAAAGAAGGGTAAAAAGAGAAGCATTTGCTTTTGAATGATCTATTATGACTAATAAAAAAGCATTACCAGTTCCAAATTTTGGTAGTGACTTTTACTTTAGTTACCACAAATCTCCTTCACAAAAAATGAGAATTCTAGAGTTGTTACCACACTCCGATGGCAACGGTTCTTCGACGGAAGAAGAACCTTTACCTCAGGATGCAGATTATAATCTCAGTCTCAGCGACGAACTAGAGACATCGATCTCGGCGAGATTTCCAAGATCACAACATTGGAAACTATCTTTTCTAAACAAGAGATTTTTAACTCTGATGAAAAGTGGCGAGATCTATAAAATACGGAAAGAGTTAGGACTTAAAGAACCATCCGTTTTCATGTTAGCTAGCGGCGAAAGCAATTGGTGGGGTATGGGAATGGCCTTTCAAATCAAGCAGGAAGCTTCCAAGGATTCAATCAGATTACAGCTTTGAATTTGGTGATAAAGAATCATTTTCGGCAGGGTCAGAGTTATTTGTTTCGGGCAAAGAATTTGACGGACCCGTTCTTTGGCGATATGATTCGGATACTAATGAATGGTTCAAAGTCCATTCATGATAATCCTAGTGCCTATTTGCTTCAGC | |||||||||
gi|9684871|gb|AL385120.1|AL385120 MtBC26E02R1 MtBC Medicago truncatula cDNA clone MtBC26E02 T7, mRNA sequence TAATCTGCATCCTGAGGTTTA EST sequence (targeted fragment marked with yellow): GCAGGCGTCTGTCTGCATCTCTAACCTCTCTCTCGATTTTTGTTGTCAAGGGAATTTCTCAGCAAACCTCAAGATGCAGATCGAAAAAGGACAAATCACCGAGCTCTACATTCCTAGGAAGTGTTCTGCTACAAACAGATTGATCACTGCGAAGGATCATGCTTCAGTTCAGCTTAACATAGGTCATTTGGATGAGAGCGGTGTTTACAATGGTCACTTCTCCACTTTTGCTCTCTGTGGCTTCACTCGTGCTCAGGGAGATTCTGACAGTGGAATTGATCGCCTGTGGCAGAAGAAGAAACCCGAATTGAAGCAGTAGATGAAATGATCACATCTTTATTATGTGGTTTTTTACATATTGTCATGTGTTGAATTCAACTTTGTTAGAGATATTGGATTATTCTATGTAATGTGATGCCTGTTTTGAAATTCATTTGGTACCTTTAAGGCATTCACTAAGTTGCTTTTTAATTAAGTGCTTCAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||