| mature miRNA: TATGCACGGTGCATAAGGAAA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89245632|gb|DY617419.1|DY617419 AC3392 NOLLY Medicago truncatula cDNA 5', mRNA sequence TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TGCTAGGCTCCTTATGCACCCTGCATAAGTCCCAGCCCATTAACTGGTAGCCCAACATAATTGTTTCATACACCCCAACCCATTTTGTCATACACCCCCAAGCGAAACCAAACGAAACGAAATCAAAACAACACAGGAAGCATCATCCATCCATTCCTCTAAATTCTTCAATGCTACCTTCTTATGGAAATGCAACTTTCTTATTCATTTTACGAGGAACAAATCATTTCAAGGGTCTATTTTGCTGGATATTTACATCACAAATTTGGTATATGCTTTGTCCATCAAGTTCTTCTGCTGCATAACAAATTCAATTACAAGCCAAAAAGTGGTGATTCACCCAAAAAAATAGTAATATGTGGTCTTTTAATATCACAAGTAGTGGACTGGAATAATTTGAGGTATACATACAAACAATAATACACAGGCTAGCTCAGAAGGGTAGCTTTTGCAACAAAGGAAAAGGATAAGCTGGATAGCAGAGAGATTCTATGCAATATTGTCATGCTGAACTTCTGTTGATAATTTTTTCCATATGATGCATCTTACGGCAATATCTTATAGATATATGTGAGGTATTATTGCATAAGTGTAATCAAGTGAAAAGAGTTTTGCTATTATTATCATTAATAAAATTGTTAAAGTGAGGTCCAAAAAAAAAAAAAAAAA | |||||||||
gi|22086760|gb|AJ497101.1|AJ497101 AJ497101 MTFLOW Medicago truncatula cDNA clone mt--abc955104e11, mRNA sequence TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TATGCACCGTGCATAATTGCTTCATACACCTCAACCCATTTTGCCATACACCTCCCAAACACATCTTTATTTTCATTTCTGTCCAAAACCAAACGATGTGTTCATCATCATCATTGTGTGCATCACACAACCACCGTAGTTAACACATTAGTGATCGATGAAATAAAATCAAATAATAAATTTCAATATCTTCATTTTTTATAAATTAAAAAAACTAAAATTTTGTAAATAAATCTCAACAAAAAAAAAAATGCAAGAGAATTCTATTTCATTTCATTGAAAATCAAAGGATCAACACAAGGGGTATGTTAAAATGACAAAAGTTATGGTACATAAGGAAATCCTTATGCACCGTGCATAAGCACTTCACAACCATCAGATTTGATCTCTCTCAATCTAATCACTCTTCTTCCATCTCTCAGATCTCTCTCACACACTGATTCTGATTTCCCCAATTCTCTCTCTTCCTCTGCGGCTTCCACTCCCTCCGCCGTCGCCGGAAAACTTCAACTGATCTCGTTCCAATTTCAAATGATCTCGATTCATCTACATTTCTTCCAATTCCATTGCCGAATTCATCACCGTCGTTGATTCGTAAGCGTTGCAGAGAGTAATCGATTTTAAGAAATGGTTGGTGGTGCTGCATGAGGTTTTGTTAC | |||||||||
gi|157984964|gb|EX533236.1|EX533236 MTGland_B047_2007-06-23/MtGland_B047_A10_040_1 Medicago truncatula A17 glandular trichome Me TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TGATGACTCAACCTAAAAAAATTGAAATTAGTCAAAATAATTATTAAATTTAATCGTATAATTTATTAATTAGTTAAATTATATAATCATTTTGAACTTTTATAATTAATTACATTTTTATATTCTTTACCTCTTTTACAAAGTTAATTAATTGAATCATCTCAAGTGAGATTTTTTATTTTATTTGTAAGGGTATATTTGTACTTTTAACAATAATCAACACTTATCTCTTCGGGAAAAGTTATGGTGCATAAGTCATTTCCTTATGCACCGTGCATAAACACTTCACAACCATTGGATTTACATAAGAAAAGACAGTATAAAAACAACTTCAAACCAAAAAAAGGCATAAACCAACACTCTTTCTCTCTCTAAGTCTGAAACTTAGAGAGAGATGCTCTGCAAAAGAGTTTCTTCTCCGACCTCCTCTTCAAGCGCTGGCGTGGTGGCTGCCGGCCCAACAAGGCGGCGGCGCTGCGTCGGAGATAGCAAAAACCTCCGTTTTCAAAAAAAAATTCAAGAGTCCGACATCTATTTTCTTTTTAAACTCAAATCCACCTTTAAAATTTTCAAAAAGCAAACACATATGCCTAGATCTAGCTTTAAAGATTCGGG | |||||||||
gi|157981567|gb|EX529839.1|EX529839 MTGland_A059_2007-06-22/MTGlandA059_E07_028_1 Medicago truncatula A17 glandular trichome Med TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TTACGGCCGGGTNCTCAATGACAGAAGAGAAAATGAACATTTTTTATATTCAAGATTAATAAGTGTTAATAAGACATGTTTTATGCATTTTAATTACCTCAGGCCTATTTGTCAATATCTCCACATTTCAACTGGAATTGTGCATAAACACATTCAATATGTACCATGATGCCATTGCTCTTAGAAAACATCCCTATAAACCACTTGTGTAAAATTAAAATACAGTTGTATATGTTAAATAAAATTTTCCTATTCCAAAGTTTCATATCACTTTTCATATTGTTTTAAAGTAGAGTTAAATAATAATTTCCTCTTCCAAAATTAGAATTCTTTGCAATATAGTTCATCTTTCGGGGGTGCGGTTATCATGCATAAGGAAATCCTTATGCATCGTGCATAAATCCCAGCCCATTAACCGGTAGCTCAACATAATTGCTTCCCTACACCCCCAAGTGAAACCAAACGAAACAAAACTACAACCGCGGAAATCATCATTTTAGTTCAATGATGATTTCAGAGTGTTGATTTGGTTCAATGACAGTCACAAATGTCCTTATTATAGTATGTTTTGTATAAAATTATGCCAAAACCATTTTGCTGTGTAAATGGTTTCTGTGAGTTGTACTCCAAAACACTGACAATTGGCAAAAATTATCAAACATAATTTTTAGATCAAACATAAAAAATTATCAAAAATTCATGAAGTTCATCAAGAACAACATGAAAAATATTTTTCAGCAATTCATTTTTTGAGCTTTCACTACAAATCCATCNAACACTTTTTCAGCAAACAATCATCAGAATCACAACACACTACAAATTTCGAATTCTTCTCTTCTATCNATTTTTTGGNTTCCNAACTCACACCTAATAACNACAATCAAAGTGCAAATCAACTAAGTCATCANCCGCNATTTTTCACNTCTGTTTCNNANNNCAAGCANACANATCTNAAGAAANNAANNANANANCANTACGTGNNNAATCNTCC | |||||||||
gi|148764560|gb|ES611254.1|ES611254 MTGland_A005_2007-02-17/MTGlandA005_E03_012_1 Medicago truncatula A17 glandular trichome Med TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGTANAGTGTTTGTCACTGAATCACCTTAACTCTAGTTTGCTAGCGGTTTTTCTATTAAATGATGAGAAGAAAACTAATCTATCAATCAATAGTATTACCAGTGTTAAACAACTAAACAGTAAACTCATTATTTTATATCCCGCTCAAAAATCATTTGCATTCTGATCAAAATAGACCAAGAAAATTGATCGGAGGTGGGGTCGTACCTATAAGCACTCTGACGTTCGGGAGTGGTTATGGTGCATAAGGAAATCCTTATGCACCGTGCATAAATCCCAACATGATTGCTTCCTACACCCCTAAAGTGAGCCAAAACCATTTTTGTTCAAAATAAAAGAAATCTAATGGTTGTGATGTGTTTATGCACGGTGCATAAGGAAATAACTTATGCACCATAACTTTTGCCNTGGATTAATCCTTAGAAATCTAAAGGGTTCTCGAATTCCGTTTTTCTTCTACATCTCTCTTGTGCTTTTGCAAGTTACATCAATAGAAAATTTGGGAAATAAATAAATAAATGATTTTGAAAATATATTTTAAGTTCTCAAAAACCATCTTCCCTTCAAAACCCTCAATTCAAGGTTTTGGGTGAAGAAATAATTTCAAAATATGATTTCTCTAANACTAGTGTGTGATGATGCCCTGTGGTTTAGGCTCCCATTGTGACTGTATCAAANACCTTTTGAATCNAAAACTTTTGCATGAANAGGAANATATTTATGAATGGGATCANCTAACACTTAAAANGGAAATATATAATGTTATGGGTAANNNAGTGNGANNAAANNNTTGGTCNAAATAAAAANNGTGAATANNNA | |||||||||
gi|148764560|gb|ES611254.1|ES611254 MTGland_A005_2007-02-17/MTGlandA005_E03_012_1 Medicago truncatula A17 glandular trichome Med TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGTANAGTGTTTGTCACTGAATCACCTTAACTCTAGTTTGCTAGCGGTTTTTCTATTAAATGATGAGAAGAAAACTAATCTATCAATCAATAGTATTACCAGTGTTAAACAACTAAACAGTAAACTCATTATTTTATATCCCGCTCAAAAATCATTTGCATTCTGATCAAAATAGACCAAGAAAATTGATCGGAGGTGGGGTCGTACCTATAAGCACTCTGACGTTCGGGAGTGGTTATGGTGCATAAGGAAATCCTTATGCACCGTGCATAAATCCCAACATGATTGCTTCCTACACCCCTAAAGTGAGCCAAAACCATTTTTGTTCAAAATAAAAGAAATCTAATGGTTGTGATGTGTTTATGCACGGTGCATAAGGAAATAACTTATGCACCATAACTTTTGCCNTGGATTAATCCTTAGAAATCTAAAGGGTTCTCGAATTCCGTTTTTCTTCTACATCTCTCTTGTGCTTTTGCAAGTTACATCAATAGAAAATTTGGGAAATAAATAAATAAATGATTTTGAAAATATATTTTAAGTTCTCAAAAACCATCTTCCCTTCAAAACCCTCAATTCAAGGTTTTGGGTGAAGAAATAATTTCAAAATATGATTTCTCTAANACTAGTGTGTGATGATGCCCTGTGGTTTAGGCTCCCATTGTGACTGTATCAAANACCTTTTGAATCNAAAACTTTTGCATGAANAGGAANATATTTATGAATGGGATCANCTAACACTTAAAANGGAAATATATAATGTTATGGGTAANNNAGTGNGANNAAANNNTTGGTCNAAATAAAAANNGTGAATANNNA | |||||||||
gi|33105881|gb|CF069222.1|CF069222 EST669943 MTUS Medicago truncatula cDNA clone MTUS-17H2, mRNA sequence TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TTCTTACGTTGAAAGAAGGAAATATTTATCTAAAATTATGAAGTTTATTTATATTATGATCCTCTTTCTTTCTCTATTTCTCGTTCAATTTCTTACATGCAAAGGATGTAAGCCATTTTGCATTCTTTTAATTTTTTTTGTCTAGTGAGCCTAGTGATTGGAGCTCACACATTAAAATGTGGAGAAGTTGGGTGTTCGGAGTTCGAACCTCGGCCTCTGCATAAATTATGCAATGTCCCTGCCAATTGAGCTAAGCTCACGTGGGGCACAGTTATGGTGCATAATGAAATCCTTATGCACCTTGCATAAATCCAAAAATTGTTTCTATGAGTTGTACTCCAAAACCATTCGATGTACGTAATGATTTCCAGCACCCTGCATAAGGATTTCCAGCACCCTGCATAAAAGTATGCCAAAACCATTTTGCTGTGGAAATGGTTTCTGTGAGTTGTACTCCAAAACCATTTGATTAACCGTTCCATGTGAAAATCCAACTACTTGTCCAGAAGATTTCTGTACGCCTCCAATGATTACACGGTGTATTAATTTCATATGTTTATGTGATGGTCCTGAATATGCCGAACCGGAATATGATGGTCCTGAACCGGAATATGATCACAAGGGTGATTTTTTGAGTGTGAAACCTAAAATTATAAATGAAAATATGATGATGAGAGAGAGGCACATGATGAAAGAAATAGAGGTATAAAGTCCTTATATATGATTACCAGAACTAAGGAATATTATTTATAAATAAGTATGAAATAATTTGTATTTAAT | |||||||||
gi|148764876|gb|ES611570.1|ES611570 MTGland_A009_2007-04-04/MTGlandA009_B04_015_1 Medicago truncatula A17 glandular trichome Med TATGCACGGTGCATAAGGAAA EST sequence (targeted fragment marked with yellow): TTNCGGCCGGGGTCTTANTATATTTCTTTTCTTCATCATCAACAACACAACCACCACTCAAACCACTATTAAAACTACAAAAACCACCACTTAAACGGCAAAAGTTATTATGCATAAGTCAATTTCTTATGCACCCTGCATAAACACTTCACAACCATCAGATTTTCTTATTCTCGCATCAATCACCTTCACTCTCTCTTCCTCCGTTATTCCCGTCGCTTTCTTCCCATGAGCTGCTCCGCCATAATTGGCCGCGCCGGTGCCACCTCCGGTCCCTGTTGTGTTCCTCATCTCCACCACTTCTGTACATCATTTTCATCCCCTTTCCTATTCCAATCCCACAGAAACTCTAAACCATTACGCGCCACAATCACAATTTCATGTTCTTCAAACAAAGCTAAGCAGCTTCGCGAAATCCTCGATTCACCAAGAGTTCATCAAGGTCCAGCATGTTTCGACGCACTCAGTGCAAATCTAGTTCAATCCGCTGAAGTGGGTTGTGATGGTTCTGGGTTTGGAGGTGGAATTGGTTTCGTGATTTATCCGGCCAGCTTCACGGCGANGTGATTGCGACGTGATTTCACCAGCGAGGTTGCACGAATTTCTCCAGCGACATTCCTTTCCTTCTCCAAAACTGCTGGAAACCATTAAGTACATCTAATGGTTTTGGAGTACAACTCATANAAACCATTCCCACAGCNAAATGGTTTTGGCATAATTTTATACAAACATACTATANTAANNNCNTTTGNTACTGNCNNTTGAACCAAATCNACACTCTGAAATCNTCATTGAACTAAANGANGANTNCNNNGGNTG | |||||||||