| mature miRNA: TATGCAGGGTGCATAAGGATT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21906078|gb|BQ750673.1|BQ750673 EST633409 KVKC Medicago truncatula cDNA clone pKVKC-9G10, mRNA sequence TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): GGATTAGCTTTCTGTTATTCAGTTGTTAGATCGATGTGTATAACATTATTATCGGTAACTTTTTTTTTTTGGACCAAATTATTCTCAATAACTTCTAACAGCAAACAAATGTAACAAAACTTGCATAATACAATAATGTGGTTTTGAGAATATCAAATAACTTTGAATGTTCGACAAACAAAGACTTAAATGTTACAAAACTCACAAAAATACCAAAATTAGTATTTTAAATGAAATTATACTTTTAGAATTACCATGTAATTATTTTTCAACTTAATTTCTACTAACAACATTGGCAAATCATCCTTATGCACTTTGCATATTCAGGAACCATACACGGCATTATATGACAATCTTCGTCATCCTCACATAAATAAACTCCATCGGTTGCCATGATAAAAATGAAAAGAAAAAGTATCACTACAT | |||||||||
gi|33105881|gb|CF069222.1|CF069222 EST669943 MTUS Medicago truncatula cDNA clone MTUS-17H2, mRNA sequence TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): TTCTTACGTTGAAAGAAGGAAATATTTATCTAAAATTATGAAGTTTATTTATATTATGATCCTCTTTCTTTCTCTATTTCTCGTTCAATTTCTTACATGCAAAGGATGTAAGCCATTTTGCATTCTTTTAATTTTTTTTGTCTAGTGAGCCTAGTGATTGGAGCTCACACATTAAAATGTGGAGAAGTTGGGTGTTCGGAGTTCGAACCTCGGCCTCTGCATAAATTATGCAATGTCCCTGCCAATTGAGCTAAGCTCACGTGGGGCACAGTTATGGTGCATAATGAAATCCTTATGCACCTTGCATAAATCCAAAAATTGTTTCTATGAGTTGTACTCCAAAACCATTCGATGTACGTAATGATTTCCAGCACCCTGCATAAGGATTTCCAGCACCCTGCATAAAAGTATGCCAAAACCATTTTGCTGTGGAAATGGTTTCTGTGAGTTGTACTCCAAAACCATTTGATTAACCGTTCCATGTGAAAATCCAACTACTTGTCCAGAAGATTTCTGTACGCCTCCAATGATTACACGGTGTATTAATTTCATATGTTTATGTGATGGTCCTGAATATGCCGAACCGGAATATGATGGTCCTGAACCGGAATATGATCACAAGGGTGATTTTTTGAGTGTGAAACCTAAAATTATAAATGAAAATATGATGATGAGAGAGAGGCACATGATGAAAGAAATAGAGGTATAAAGTCCTTATATATGATTACCAGAACTAAGGAATATTATTTATAAATAAGTATGAAATAATTTGTATTTAAT | |||||||||
gi|89245632|gb|DY617419.1|DY617419 AC3392 NOLLY Medicago truncatula cDNA 5', mRNA sequence TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): TGCTAGGCTCCTTATGCACCCTGCATAAGTCCCAGCCCATTAACTGGTAGCCCAACATAATTGTTTCATACACCCCAACCCATTTTGTCATACACCCCCAAGCGAAACCAAACGAAACGAAATCAAAACAACACAGGAAGCATCATCCATCCATTCCTCTAAATTCTTCAATGCTACCTTCTTATGGAAATGCAACTTTCTTATTCATTTTACGAGGAACAAATCATTTCAAGGGTCTATTTTGCTGGATATTTACATCACAAATTTGGTATATGCTTTGTCCATCAAGTTCTTCTGCTGCATAACAAATTCAATTACAAGCCAAAAAGTGGTGATTCACCCAAAAAAATAGTAATATGTGGTCTTTTAATATCACAAGTAGTGGACTGGAATAATTTGAGGTATACATACAAACAATAATACACAGGCTAGCTCAGAAGGGTAGCTTTTGCAACAAAGGAAAAGGATAAGCTGGATAGCAGAGAGATTCTATGCAATATTGTCATGCTGAACTTCTGTTGATAATTTTTTCCATATGATGCATCTTACGGCAATATCTTATAGATATATGTGAGGTATTATTGCATAAGTGTAATCAAGTGAAAAGAGTTTTGCTATTATTATCATTAATAAAATTGTTAAAGTGAGGTCCAAAAAAAAAAAAAAAAA | |||||||||
gi|148765229|gb|ES611923.1|ES611923 MTGland_A013_2007-05-02/MTGlandA013_F12_043_1 Medicago truncatula A17 glandular trichome Med TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): CNTTACGGCCGGGCTCTGATCATAATCAAGATATACCTACATCTTTAATATAGTACAATGATAAATTTAATGAGCTTTAGAGATAAAACGACATATTAATATACCTAAGAGACATTTAGTAATAATGTTAATTATATGAATGGTTTTTGGCATTTACGGGTGTTCTATTTATAAAGTGATCAAACAATTGTTTGTTTGTTACATGAAAATTAAAAACATAAACTATGGCAGCAATTCTAAAAATTAGCTATGTTTTGCTCATCTTGGTTTCCCTAATTATTGTCGCCACTAGCCATAGTAAGTAATTATTCAAACATGTTTCAATATTAATGTTTTTCATGTTTGAAATCGTTTACCTTTTTCTAATGGCTACGGTTATGTTGCATAAGGATTTCCTTATGCACTCTGCATAAATTCAGAAATGGTTTCTGTGAGTTATACTCCAAAACCATTAGATGTACTTAATGGTTTCCAACACCCTGCATAAATCATAGTATGTTTTGTATAAAATTATGCCAAAACTATTTTGCTGTGGAAATAGTTTATGTGAGTTGTACTCCAAAACCATTTCTGGATTTATGCAAACCGCACCATTTTCTAATAACTTCCACTTGTTCTTATTTGACATACAGGTTTTCTTCCTTGTCAAACTAANGACGATTGTGTATTTGATGATTGTAAATTTCCTAAAAATCCAGTGTGTTATTTGGAAGCATGCCATTGCTGGTAAGCTGNNNTTTTTTTTTTTCANNNNGAAGCTAAAATAATTTTCATGTNNCTTCTAAAGGCTAAAGNNNATTTTTTNNCCCCTTAANTTTTTAAANA | |||||||||
gi|148764876|gb|ES611570.1|ES611570 MTGland_A009_2007-04-04/MTGlandA009_B04_015_1 Medicago truncatula A17 glandular trichome Med TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): TTNCGGCCGGGGTCTTANTATATTTCTTTTCTTCATCATCAACAACACAACCACCACTCAAACCACTATTAAAACTACAAAAACCACCACTTAAACGGCAAAAGTTATTATGCATAAGTCAATTTCTTATGCACCCTGCATAAACACTTCACAACCATCAGATTTTCTTATTCTCGCATCAATCACCTTCACTCTCTCTTCCTCCGTTATTCCCGTCGCTTTCTTCCCATGAGCTGCTCCGCCATAATTGGCCGCGCCGGTGCCACCTCCGGTCCCTGTTGTGTTCCTCATCTCCACCACTTCTGTACATCATTTTCATCCCCTTTCCTATTCCAATCCCACAGAAACTCTAAACCATTACGCGCCACAATCACAATTTCATGTTCTTCAAACAAAGCTAAGCAGCTTCGCGAAATCCTCGATTCACCAAGAGTTCATCAAGGTCCAGCATGTTTCGACGCACTCAGTGCAAATCTAGTTCAATCCGCTGAAGTGGGTTGTGATGGTTCTGGGTTTGGAGGTGGAATTGGTTTCGTGATTTATCCGGCCAGCTTCACGGCGANGTGATTGCGACGTGATTTCACCAGCGAGGTTGCACGAATTTCTCCAGCGACATTCCTTTCCTTCTCCAAAACTGCTGGAAACCATTAAGTACATCTAATGGTTTTGGAGTACAACTCATANAAACCATTCCCACAGCNAAATGGTTTTGGCATAATTTTATACAAACATACTATANTAANNNCNTTTGNTACTGNCNNTTGAACCAAATCNACACTCTGAAATCNTCATTGAACTAAANGANGANTNCNNNGGNTG | |||||||||
gi|157980935|gb|EX529207.1|EX529207 MTGland_A051_2007-07-11/MTGlandA051_D07_029_1 Medicago truncatula A17 glandular trichome Med TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): ACGGCCGGGANNTCTTCTTCTGATTCGATAGATTAATGTCTTTAGTTATACATAAAAAATAAAAAAATTAGAAAAAAGTCGCATATGCATACACTCCCTCACACAATATCAAATGTAAAGCTTTATTTTTTTGAAGAAAAATATATATAATCCATGTTAAAAAATATTGGTAAAAACAAAAAATACATGATAAATATCCCACATAATTGGAGTGAGACCCATCATCACGTCAAATACTACCAATTCCAGTCAAATAGACAATTGCAAAACTGGAATGGAAGTTCATAAAATAGCATATCCATTATTGGCTGGAAAACTACAAAGTTAGCATGAATGACGTGGCATATTCTTGGCACCCACACATTTGGATAAGCTCTCACCCTACAAAGTCCATTATGGCCTTCTCAACAAAAAAGGATTTCATTCCTAATAGTTTATTTCTTTATTTAAGCAGGGTGGGTGTTACCAAAAAAGCAGGGTGAGATATGGACATACCTTTTACTTATAGAAGGTTGTACAATATTAAATATTTGTATATTTCGAAATTTGTCAAAAAATTTAAATTTTTTATTGTTGACAAAAGTTATTATGCATAAGTCAATTCTTTATGCATCCTGCATAAACATTCACAACCATCAGATTTATTATACACGAGTAATAATCCTAGGTCTCTCAGCTCACACTCTCACAACCATCATATTTGCTCCGACGTGACTCACCCTACACTCTCACAACCATCAGATTTGCTCCGACGTCTCTGTCTCTATCACGTTCTCTTTCTTTGTAACTGTCTCGATCGTGACCATGGTCACNGTCCCAATCCCAACNGTCAGAATCAGAGGGNTTGGGATCGGANGANCGATTGTTGTTATTAGTGNAAAGGAGAAGTTCTTCTTGGTCACGTTTGTGACCGGCGACTTGATTGTAGCGGCGTTCGANTGCTTGATCNNNNTTGAATCCNAGCTTNGGGTTNGGNTTNNTGATCNTANCNCTANCCNANGGNNGNCNCTCTC | |||||||||
gi|22086760|gb|AJ497101.1|AJ497101 AJ497101 MTFLOW Medicago truncatula cDNA clone mt--abc955104e11, mRNA sequence TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): TATGCACCGTGCATAATTGCTTCATACACCTCAACCCATTTTGCCATACACCTCCCAAACACATCTTTATTTTCATTTCTGTCCAAAACCAAACGATGTGTTCATCATCATCATTGTGTGCATCACACAACCACCGTAGTTAACACATTAGTGATCGATGAAATAAAATCAAATAATAAATTTCAATATCTTCATTTTTTATAAATTAAAAAAACTAAAATTTTGTAAATAAATCTCAACAAAAAAAAAAATGCAAGAGAATTCTATTTCATTTCATTGAAAATCAAAGGATCAACACAAGGGGTATGTTAAAATGACAAAAGTTATGGTACATAAGGAAATCCTTATGCACCGTGCATAAGCACTTCACAACCATCAGATTTGATCTCTCTCAATCTAATCACTCTTCTTCCATCTCTCAGATCTCTCTCACACACTGATTCTGATTTCCCCAATTCTCTCTCTTCCTCTGCGGCTTCCACTCCCTCCGCCGTCGCCGGAAAACTTCAACTGATCTCGTTCCAATTTCAAATGATCTCGATTCATCTACATTTCTTCCAATTCCATTGCCGAATTCATCACCGTCGTTGATTCGTAAGCGTTGCAGAGAGTAATCGATTTTAAGAAATGGTTGGTGGTGCTGCATGAGGTTTTGTTAC | |||||||||
gi|10706659|gb|BF006384.1|BF006384 EST434882 DSLC Medicago truncatula cDNA clone pDSLC-40J1, mRNA sequence TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): CTACAGCAGGCGATGCAAAAAGAATAGGAAAGAGACATAGATTTCTCCAAAAAGTTACAAGCTGGAGCTAAACCAGATGGTGAATTTGGCTGTGTTGATGTAAACATCATTTCAAGATACCTGGATGGAAAGCTGATTGTTTGTCATTGCTCATTTAACAAGTATACCGAGAATTTTCTCGTACAAGCTGAAGGAATGGGGTTTGGTGGCAGCAAAGATGGTCAAATAACCATTATCTTTTGTCCAAGAGTTTGCAATAATGCCGACCTTGAAGTGGGGAGCTTAATCCGTATTCACCCTCCATGGAATGAAGT | |||||||||
gi|148764560|gb|ES611254.1|ES611254 MTGland_A005_2007-02-17/MTGlandA005_E03_012_1 Medicago truncatula A17 glandular trichome Med TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGTANAGTGTTTGTCACTGAATCACCTTAACTCTAGTTTGCTAGCGGTTTTTCTATTAAATGATGAGAAGAAAACTAATCTATCAATCAATAGTATTACCAGTGTTAAACAACTAAACAGTAAACTCATTATTTTATATCCCGCTCAAAAATCATTTGCATTCTGATCAAAATAGACCAAGAAAATTGATCGGAGGTGGGGTCGTACCTATAAGCACTCTGACGTTCGGGAGTGGTTATGGTGCATAAGGAAATCCTTATGCACCGTGCATAAATCCCAACATGATTGCTTCCTACACCCCTAAAGTGAGCCAAAACCATTTTTGTTCAAAATAAAAGAAATCTAATGGTTGTGATGTGTTTATGCACGGTGCATAAGGAAATAACTTATGCACCATAACTTTTGCCNTGGATTAATCCTTAGAAATCTAAAGGGTTCTCGAATTCCGTTTTTCTTCTACATCTCTCTTGTGCTTTTGCAAGTTACATCAATAGAAAATTTGGGAAATAAATAAATAAATGATTTTGAAAATATATTTTAAGTTCTCAAAAACCATCTTCCCTTCAAAACCCTCAATTCAAGGTTTTGGGTGAAGAAATAATTTCAAAATATGATTTCTCTAANACTAGTGTGTGATGATGCCCTGTGGTTTAGGCTCCCATTGTGACTGTATCAAANACCTTTTGAATCNAAAACTTTTGCATGAANAGGAANATATTTATGAATGGGATCANCTAACACTTAAAANGGAAATATATAATGTTATGGGTAANNNAGTGNGANNAAANNNTTGGTCNAAATAAAAANNGTGAATANNNA | |||||||||
gi|157984964|gb|EX533236.1|EX533236 MTGland_B047_2007-06-23/MtGland_B047_A10_040_1 Medicago truncatula A17 glandular trichome Me TATGCAGGGTGCATAAGGATT EST sequence (targeted fragment marked with yellow): TGATGACTCAACCTAAAAAAATTGAAATTAGTCAAAATAATTATTAAATTTAATCGTATAATTTATTAATTAGTTAAATTATATAATCATTTTGAACTTTTATAATTAATTACATTTTTATATTCTTTACCTCTTTTACAAAGTTAATTAATTGAATCATCTCAAGTGAGATTTTTTATTTTATTTGTAAGGGTATATTTGTACTTTTAACAATAATCAACACTTATCTCTTCGGGAAAAGTTATGGTGCATAAGTCATTTCCTTATGCACCGTGCATAAACACTTCACAACCATTGGATTTACATAAGAAAAGACAGTATAAAAACAACTTCAAACCAAAAAAAGGCATAAACCAACACTCTTTCTCTCTCTAAGTCTGAAACTTAGAGAGAGATGCTCTGCAAAAGAGTTTCTTCTCCGACCTCCTCTTCAAGCGCTGGCGTGGTGGCTGCCGGCCCAACAAGGCGGCGGCGCTGCGTCGGAGATAGCAAAAACCTCCGTTTTCAAAAAAAAATTCAAGAGTCCGACATCTATTTTCTTTTTAAACTCAAATCCACCTTTAAAATTTTCAAAAAGCAAACACATATGCCTAGATCTAGCTTTAAAGATTCGGG | |||||||||