| mature miRNA: TCCAAAGGGATCGCATTGATC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89244301|gb|DY616088.1|DY616088 AC1481 NOLLY Medicago truncatula cDNA 5', mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GTCAAAACATGGCTAAAAATATAAAATGTCTTAATGTTTTGATTCTATTTCTTTACATGTTTCTTGTCCTGACGCTACTTGATTTTGGTTCTTCTACTACGCCCACTCCTTGTCGTACAGATCAGGATTGTCCACGAAAAAAAAAAAAAAAAAACTCGAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCTTTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGAAGCATGCAAGACACTGGCTAAGAAGATGCCCGAGGTTGAATGTGGAGATTTTCAGTGAAAGTGAACAGGCAGATTGTTACGTGGAANATGGGCA | |||||||||
gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): ACTGAACTTGAGTTATGCTACAATCCAAAGCCCGGATCTTATCAAGCTTGTGGGTCAATGCCAGAGTTTGCAGCGCTTATGGGTTCTGGATTACATAGAAGATGCTGGCCTTGACATGCTTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCTGACCCATTTGGGTTGGAAGCAAATGTAGCGTTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGTTGCCCCAAGCTCCATTCAGTCCTATATTTTTGTCGTCAAATGACCAATGCTGCCTTAAACACAATAGCTCGGAACAGGCCTAATATGACTCGTTTTAGATTATGTATTATTGAGCCTCGAACTCCTGACTATCTCACCCTTCAATCTCTGGATTCTGGTTTTGGAGCTATTGTTGAACATTGTAAGGATCTTCAGCGCCTTTCCCTTTCAGGGCTTCTCACAGACCGTGTTTTTGAGCATATTGGGACTTATGCGAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGACTCCATCACGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGGTCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTAGCCAACGCTGCAAAGTTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCATGTAAACTGTTGGGTCAGAAGTTGCCT | |||||||||
gi|157983377|gb|EX531649.1|EX531649 MTGland_B026_2007-07-02/MTGlandB026_E12_044_1 Medicago truncatula A17 glandular trichome Med TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGNNNNGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGAAGCATGCAAGACACTGGCAAAGAAGATGCCGAGGTTGAATGTGGAGATTTTCAGTGAAAGTGAACAGGCAGATTGTTACGTGGAAGATGGGCAGAGAGTCAAGAAGATGTATTTGTATCGTACAGTGGCTGGGAAAAGGGAGGATGCACCAGACTATGTATGGACTCTGTAGGTGCATTTTAGGTTCAGTTTTATTTAATTTTTTCTTATTTATTAAGCTGTTTGTACTTTGTTTAGGCTGACTGATTAAAGCAATTTTAGTCCCCTCCGGATATTTAGTGGTTTGTACTTTGTTGTATTCTTGCACTTTGCTAGTTTTTATTATACATAAATATTAGACGT | |||||||||
gi|11609208|gb|BF520525.1|BF520525 EST457996 DSIL Medicago truncatula cDNA clone pDSIL-24I14, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CTCTACTTCTGTCACCAGATGACCAATGCTGCTCTCATAGCAGTGGCCAAAAACTGCCCAAATTTTATCCGATTTAGGTTATGCATCCTGGATGCAACAAAACCTGACCCTGACACAATGCAGCCACTAGATGAAGGTTTTGGGGCGATTGTGCAGTCATGCAAGCGACTGAGGCGGCTATCACTCTCAGGTCAGTTGACCGACCAGGTTTTCCTTTACATTGGTATGTATGCTGAGCAGCTTGAAATGTTATCTATTGCATTTGCTGGCGAGAGTGACAAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCTTTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAAGTGACTGTAGAAGCATGCAAAACACTGGCTAAGAAGATGCCGAGGTTGAATGTGGAGATTTTCATTGAAAGTGAAC | |||||||||
gi|83667775|gb|DW018183.1|DW018183 EST1227144 MTY Medicago truncatula cDNA clone MTYB332, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CGGCCGGGGCCTTTCACGCATTTTGCAAAGAAAGAAACCCGCAGGCAGCCGCTTATCACCCTCTCTCCCAAGAACAAACCCTCGCCGCCGGCCACACAACAAACCAACCGGAAAATGGCTGAGATAACACCACACCCACCGTGACTCTCATCTCCATTCATCATATTTGTTTCTCTACTCTGTTTTCGTGTTTTTCTTTCATTCACGTCTCAATCTCAACCACCATCACATTTCAGTTTCGTTTTCGTGATTCTCATCTCCAGGTGTTTTTAATTGAAGTTGAATTACCATTTTTAGTCTATCAGGGTAGAAAGAAGCAGAGAAGAAAATGAATAAGGATAAGATTTTCAAGTTGGCAAAGGGGTTCAGGGGAAGAGCAAAGAATTGCATTAGGATTGCTAGGGAGAGGGTGGAGAAGGCGTTGCAGTATTCTTACAGGGATCGCCGGAACAAAAAGAGGGACATGCGATCCCTTTGGATTCAAAGGATTAATGCTGGCACCCGCATTCATGGTGTCGATTATGGGAACTTCATGCATGGGCTGTTGAAGGAGAATATTCAACTTAACAGAAGGGTTTTGTCAGAGATATCTATGCATGAACCCTATAGTTTCAAGTCATTGGTAGACATATCACGAAATGCATTTCCTGGAAACAAGAATGTGGTTGTCCCTCCAAGAAAGGTGTCCTTTTAGAGCATTTGGCACTTCAGCAAACATTTAGATGTAGTTTATGTCAGAATGGTTATGTATGTTTCACGATTTCGGTTTAGTACACTACAAAAGATGTCAGTTTTGTATGCCTATGATTCATACTCTTCGTGGTTCTTCTTAACCAC | |||||||||
gi|8748291|gb|BE204998.1|BE204998 EST397674 KV0 Medicago truncatula cDNA clone pKV0-20C17, mRNA sequence TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GATCGCATTGGAGACTTGGGACTAGGTGTTGTAGCTAGCACATGTAAAGAATTGCAAGAATTAAGAGTTTTCCCATCAGCTCCATTTGGAAACCAAGCAGCTGTTACCGAAAAAGGACTTGTAGCGATATCAATGGGATGTCCTAAGCTTCACTCATTACTCTACTTCTGTCACCAGATGACCAATGCTGCTCTCATAGCAGTGGCCAAAAACTGCCCAAATTTTATCCGATTTAGGTTATGCATCCTGGATGCAACAAAACCTGACCCTGACACAATGCAGCCACTAGATGAAGGTTTTGGGGCGATTGTGCAGTCATGCAAGCGACTGAGGCGGCTATCACTCTCAGGTCAGTTGACCGACCAGGTTTTCCTTTACATTGGTATGTATGCTGAGCAGCTTGAAATGTTATCTATTGCATTTGCTGGCGAGAGTGACAAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCTTTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATG | |||||||||