| mature miRNA: TCCAAAGGGATCGCATTGTTT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|260526642|gb|GT143872.1|GT143872 METCL05TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GGGGATTAGAGTCAGCCACTGAACTTAACTGCCGGAAAACGCAACCGGAGTTTGCTCGTCGGCCGTCGGAAAATCGTTCAGGGTAGAAAGAAGCAGAGAAGAAAATGAATAAGGATAAGATTTTCAAGTTGGCAAAGGGGTTCAGGGGAAGAGCAAAGAATTGCATTAGGATTGCTAGGGAGAGAGTGGAGAAGGCGTTGCAGTATTCTTACAGGGATCGCCGGAACAAAAAGAGGGACATGCGATCTCTTTGGATCCAACGGATTAATGCTGGCACCCGCATTCATGGTGTCAATTATGGGAACTTCATGCATGGGCTGTTGAAGGAGAATATTCAACTTAACAGAAAGGTTTTATCAGAGATATCTATGCATGAACCCTATAGTTTCAAGTCATTGGTGGACATATCACGAAATGCATTTCCTGGAAACAAGAATGTGGTTGTCCCTCCAAGAAAGGTGTCCTTTTAGAGCAATTGGCACTTCAGCAAACATTTAGAGGTAGTTTATGTCAGAATGGTTAATGTATGTTTCAGGATTACACTACAAATAATGAACAGTTATGTATGCCTATGATTCATACTCTTGAGTAGTGCTTCTTAACCACATGATTTTCCCCCAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|157981089|gb|EX529361.1|EX529361 MTGland_A053_2007-07-12/MTGlandA053_C09_038_1 Medicago truncatula A17 glandular trichome Med TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): CNGNNTNACGGCCGGGGTANGTGCAGCATAAAAATCAGCAGTGTCAAAGAAAGTGATTCCTTTGGAGAAAGCATGTTTGATCAAAGATATGGCAACATCTTCTGGAACAGCAGCGTTGTATACTCCAGTGAGGCCCATACATCCATATCCAAGCTTAGAAACCTGAAAGCAACAATAAATATTATCAATGATTCTCAGGAACAAGGAAGTGTGAAAATTCAAGGAAGGACAAAAGTTACTTACTTCTAGGCCTTGGCTTCCAAGCTTCACTCGAGGAATATGGATAGTATCTCCCATTTTTATTTTTTTTGTGTTTCTCACTTTCTGTTTCTCTGCTCCACTCCAAAATTTTCCACTCTATCTCTTTTTCTCTGTTGTGTTGTTGTTTGTATGTTCCTCTTCAAAAATGTATTCATAGGGGCAGCCGGTAGGTGAGCGTTACCTAACTCTTGGGGCAGTGTCATAATGCCACCATTTTCCTTTTTTATTTCATTAAATAATCTTAATTGACTTTTTTAATTTTAATGCTGGCTTATTTGATTGTCTAGGCATGTAAGTCCCTGTCCTTATTCCAGGTGTTGTGTATTCAAGTCATCATCAATCTTATTTTTAAGGCTATGTTTGGTAAAAATAGCGGATAGCTGATAAGCTAGCTGATAGCTTTTAGCTAATAAATTAACTGAAATGTTTGGTAAAAATAGCGGTTCAACTAGCTGATAAATGTAAAATGACATAACAGGTATTCTTAATTCATAATAAAAATTATATCATTAATTTAAGTATTTGTAATTTTGTAAACTAATTTTTCTTTAAAAAAATACTTTAAATTTATTAATTTAATATATCCTATGTATTATAAATTAAATTAAATTTTATTCACTAAAATTTTATCNTATATTTATTATCATTTAAGTGNTTCCACTTTATAAAAAAATAACATTTACCTCAAAACAAAAAAANTANCACTAATAGAGTANACNANANNNAGANNNGAANNANNCTTANCNNNAAAAANAAANA | |||||||||
gi|13606201|gb|BG588061.1|BG588061 EST489870 MHRP- Medicago truncatula cDNA clone pMHRP-41A23, mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): TCATATAGGATGCTTTCTTTCAAAAGGATGCTATCCATTTGGAATTTCCATTTTACAATCAATAGTTCGTGTGTATGGCTTCATACTTCAAGTTCAAGAAAGGCTCACAAAGCAGATTGCAGAAACCATTTCACCATTGGTAGGTGGAAATGTGATAGTGGTTGTTGAGGCAAGTCACACTTGTATGATCTCTAGGGGAATTGAAAAGTTTGGAAGCAATACTGCAACCATTGCTGTTTTAGGACACTTTTCAACTAATCTTGCTGCAAGGACCAAGTTTTTGGAGTATTCCAAGTGCTACATCTCTTGAAGGGCAGTGATTAGTTTGATCAAGTGCAACCATAAATAAATCTATTTCTAATAAAAGTCTTCCTCATATGACATGTGGTAGAATTTCAAACGATTTACTCCCTAAATTTGTGCAATGTTGCAAAAGAATTGTAATGGTTTCTTATGAAGTTGTTCCATTTTTAATTATTGAGTAATAATAATGTTGTCTTTGAT | |||||||||
gi|8748291|gb|BE204998.1|BE204998 EST397674 KV0 Medicago truncatula cDNA clone pKV0-20C17, mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GATCGCATTGGAGACTTGGGACTAGGTGTTGTAGCTAGCACATGTAAAGAATTGCAAGAATTAAGAGTTTTCCCATCAGCTCCATTTGGAAACCAAGCAGCTGTTACCGAAAAAGGACTTGTAGCGATATCAATGGGATGTCCTAAGCTTCACTCATTACTCTACTTCTGTCACCAGATGACCAATGCTGCTCTCATAGCAGTGGCCAAAAACTGCCCAAATTTTATCCGATTTAGGTTATGCATCCTGGATGCAACAAAACCTGACCCTGACACAATGCAGCCACTAGATGAAGGTTTTGGGGCGATTGTGCAGTCATGCAAGCGACTGAGGCGGCTATCACTCTCAGGTCAGTTGACCGACCAGGTTTTCCTTTACATTGGTATGTATGCTGAGCAGCTTGAAATGTTATCTATTGCATTTGCTGGCGAGAGTGACAAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCTTTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATG | |||||||||
gi|27406007|gb|CA919077.1|CA919077 EST636795 MTUS Medicago truncatula cDNA clone MTUS-7D9, mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GTCACTTTCAATTTGCTTTTCTCATCATAATGCATTCAATTAATAACCACAGGGAAGCAAAAAAAAAAAAACATCAAAATCCTATTTCTCAACAAACAAAAAAATTGTCATTCTGTTCATTAACAATAAATTGTAAATCAATATGAATTTTATTAATCACCAAGTAACACCAATTTTCGGTTTCACCTAGTGCGACATCGCTAGCCGCAAGCTGAAACAACAGCATCAGGTATATGAGAAAATACAATGGAGAAAGGAGCAATCCTTATCGGCTTTGATGAGCTTACATATAGAGGCTTCAAAGGAGGAATATCACCATCCGAGTTTACGCTTAAAACATTTCCATTCAGTAACATGACTTGGCTATGTATATTTCCACCCTGTGGAGTTAGATGGTACTCTTCTCTTGATTTTTCAATTGAACTTTGAAGAGGTAGTTTCATCATTCTTGAATAGTAAGGCATCTTTCTATGCAAGGAACTCTTACCATCGCTAAATGTCGCTTCAACGGTTGTGCTGTTGTCCAGGTTGATCAAAAGTATTGTGATTCCTTTGGATTGTTTTGCACAGTGCGCATAAGCTCGTATCTTGTTTGTTCCTGAGAAGGTAGTTGATAGTACACCTCTTCCCATGAGTCGGTGCCAAAGAAGAGCACTATAGTAGTCTGGGATTTGGAAGGAAAATGGGTGGTATTGAGT | |||||||||
gi|209564474|gb|GE346759.1|GE346759 MEUAZ75TFB JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GGGAAATTGAATACACGTATTATTTTCTTGTCATCTCTGGCTGAGAAGATGGTGTCACATACAGTTGAACTTTTGAAGAACGTGATTCCTTTGGAGCAAGAATCAGTGGTTTTAGCTGAAGACATCGTAAATGGTCTTGTTCTTGTCGATATCATAAATGGCTTCTGCACAGTTGGTGCTGGAAATCTGGCACCAAGAGAGTCCAATAGACAAATTTCAGAAATGATCAATGAATCAGCAAGGCTAGCTAGACTATTCTGTGAGAAGAAATTGCCAATTATGGTTTTCCTTGATTCTCACCAACCTAACAAGCCAGAGGAACCTTACCCCCCTCACTGTATTGCTGGGACTGATGAATCAAATCTAGTTCCAGCGTTGAGATGGCTAGAGAATGAAACCAATGTAACAATCAGACGTAAGGATTGTTTTGATGGATATGTTGGCTCAATGGAAGAAGATGGTTCAAACGTTTTTGTAGATTGGGTGAAGAAGAATAAGATCAAAACTATGGTGGTGGTAGGTGTATGCACAGATATATGCGTTCTGGATTTTGTATGCTCCACAATGTCAGCTAAAAACCGTGGTTTTCTCAAGCCTCTGGAAAATGTGGTGGTATATTCAAATGCATGTGCTACTTTCAATGTCCCTCTTGAAGTAGCCACAAATATCA | |||||||||
gi|11609208|gb|BF520525.1|BF520525 EST457996 DSIL Medicago truncatula cDNA clone pDSIL-24I14, mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): CTCTACTTCTGTCACCAGATGACCAATGCTGCTCTCATAGCAGTGGCCAAAAACTGCCCAAATTTTATCCGATTTAGGTTATGCATCCTGGATGCAACAAAACCTGACCCTGACACAATGCAGCCACTAGATGAAGGTTTTGGGGCGATTGTGCAGTCATGCAAGCGACTGAGGCGGCTATCACTCTCAGGTCAGTTGACCGACCAGGTTTTCCTTTACATTGGTATGTATGCTGAGCAGCTTGAAATGTTATCTATTGCATTTGCTGGCGAGAGTGACAAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCTTTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAAGTGACTGTAGAAGCATGCAAAACACTGGCTAAGAAGATGCCGAGGTTGAATGTGGAGATTTTCATTGAAAGTGAAC | |||||||||
gi|151388508|gb|EV258379.1|EV258379 MTYDJ65TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): ACTGAACTTGAGTTATGCTACAATCCAAAGCCCGGATCTTATCAAGCTTGTGGGTCAATGCCAGAGTTTGCAGCGCTTATGGGTTCTGGATTACATAGAAGATGCTGGCCTTGACATGCTTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCTGACCCATTTGGGTTGGAAGCAAATGTAGCGTTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGTTGCCCCAAGCTCCATTCAGTCCTATATTTTTGTCGTCAAATGACCAATGCTGCCTTAAACACAATAGCTCGGAACAGGCCTAATATGACTCGTTTTAGATTATGTATTATTGAGCCTCGAACTCCTGACTATCTCACCCTTCAATCTCTGGATTCTGGTTTTGGAGCTATTGTTGAACATTGTAAGGATCTTCAGCGCCTTTCCCTTTCAGGGCTTCTCACAGACCGTGTTTTTGAGCATATTGGGACTTATGCGAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGACTCCATCACGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGGTCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTAGCCAACGCTGCAAAGTTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCATGTAAACTGTTGGGTCAGAAGTTGCCT | |||||||||
gi|57502504|gb|CX533785.1|CX533785 s13dNF0OD02MJ014_320852 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GCACGAGGGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCTAAAATTGCTCAATACTTACCGGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTAAACAGCAAGCAATTTAAAGATGCTATGCGATACCTTTGGATGCCAAGGCTAGTGGAGCGCATCCAAGCTGCCGCATCCACCTCCGCCACCCTAGCCACCGCCACTAATAATGGTTTACCAAGTGGTACAACGACGGTCACCACCAACAATACACCATACAACATAAACAACAATTTTGATGTCCATAGTGACGCGAACATGTTAACTCCAACAATTATGAACACCAACAGTTTATGTGGTTCACATGTTGCACAAAGTTATACCCCGGAAAATAGTAGCAATGGCGCCGCAGCAGCATCATCGGATTCATTTGGGACACAAGTTTCGCCTATCTCGGAATTGACTCAAGATTACTACAATGTCCCAGTTGGTAGTAACAACAATAATAACCCTAATTCTGATTATTACCAACAAGCTCAACAATTTGGGTTTTTTGATTGCATAACTAGCCCATCTGGATTGTTCCCT | |||||||||
gi|89244301|gb|DY616088.1|DY616088 AC1481 NOLLY Medicago truncatula cDNA 5', mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GTCAAAACATGGCTAAAAATATAAAATGTCTTAATGTTTTGATTCTATTTCTTTACATGTTTCTTGTCCTGACGCTACTTGATTTTGGTTCTTCTACTACGCCCACTCCTTGTCGTACAGATCAGGATTGTCCACGAAAAAAAAAAAAAAAAAACTCGAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCTTTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGAAGCATGCAAGACACTGGCTAAGAAGATGCCCGAGGTTGAATGTGGAGATTTTCAGTGAAAGTGAACAGGCAGATTGTTACGTGGAANATGGGCA | |||||||||
gi|83667775|gb|DW018183.1|DW018183 EST1227144 MTY Medicago truncatula cDNA clone MTYB332, mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): CGGCCGGGGCCTTTCACGCATTTTGCAAAGAAAGAAACCCGCAGGCAGCCGCTTATCACCCTCTCTCCCAAGAACAAACCCTCGCCGCCGGCCACACAACAAACCAACCGGAAAATGGCTGAGATAACACCACACCCACCGTGACTCTCATCTCCATTCATCATATTTGTTTCTCTACTCTGTTTTCGTGTTTTTCTTTCATTCACGTCTCAATCTCAACCACCATCACATTTCAGTTTCGTTTTCGTGATTCTCATCTCCAGGTGTTTTTAATTGAAGTTGAATTACCATTTTTAGTCTATCAGGGTAGAAAGAAGCAGAGAAGAAAATGAATAAGGATAAGATTTTCAAGTTGGCAAAGGGGTTCAGGGGAAGAGCAAAGAATTGCATTAGGATTGCTAGGGAGAGGGTGGAGAAGGCGTTGCAGTATTCTTACAGGGATCGCCGGAACAAAAAGAGGGACATGCGATCCCTTTGGATTCAAAGGATTAATGCTGGCACCCGCATTCATGGTGTCGATTATGGGAACTTCATGCATGGGCTGTTGAAGGAGAATATTCAACTTAACAGAAGGGTTTTGTCAGAGATATCTATGCATGAACCCTATAGTTTCAAGTCATTGGTAGACATATCACGAAATGCATTTCCTGGAAACAAGAATGTGGTTGTCCCTCCAAGAAAGGTGTCCTTTTAGAGCATTTGGCACTTCAGCAAACATTTAGATGTAGTTTATGTCAGAATGGTTATGTATGTTTCACGATTTCGGTTTAGTACACTACAAAAGATGTCAGTTTTGTATGCCTATGATTCATACTCTTCGTGGTTCTTCTTAACCAC | |||||||||
gi|157983377|gb|EX531649.1|EX531649 MTGland_B026_2007-07-02/MTGlandB026_E12_044_1 Medicago truncatula A17 glandular trichome Med TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): TTACGGCCGGGGNNNNGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGAAGCATGCAAGACACTGGCAAAGAAGATGCCGAGGTTGAATGTGGAGATTTTCAGTGAAAGTGAACAGGCAGATTGTTACGTGGAAGATGGGCAGAGAGTCAAGAAGATGTATTTGTATCGTACAGTGGCTGGGAAAAGGGAGGATGCACCAGACTATGTATGGACTCTGTAGGTGCATTTTAGGTTCAGTTTTATTTAATTTTTTCTTATTTATTAAGCTGTTTGTACTTTGTTTAGGCTGACTGATTAAAGCAATTTTAGTCCCCTCCGGATATTTAGTGGTTTGTACTTTGTTGTATTCTTGCACTTTGCTAGTTTTTATTATACATAAATATTAGACGT | |||||||||
gi|10699976|gb|BE999700.1|BE999700 EST431423 GVSN Medicago truncatula cDNA clone pGVSN-24E4, mRNA sequence TCCAAAGGGATCGCATTGTTT EST sequence (targeted fragment marked with yellow): GTATTGATATTAAAGGATGGCTGAAATTGGCAAAGGAATTGACTTTGAGGATTTGTTACCGGTGATCGCGAATAAGCTAGGTGGTGAAGGTTTAATGAAGGAACTATGTAATGGTTTCAAGTTACTTATGGATAAAGAAAAAGGTGTGATCACTTTGGAGAGTCTAAGAAAAAACTCAGCATTGATGGGTTTGCAAGATTTGAAGGAAGATGAGCTTGTGAGCATGATGAGAGAAGGTGATCTTGATGGTGATGGTGCACTCACTGAGATGGAGTTTTGTGTTTTGATGTTTAGATTAAGTCCTCAATTGATGGAAGAGTCATGGTTTTTGCTTGAAGAAGCATTGGATCATGAACTTAAGTAGCAACCATTCATTTTAAAGAGTCATTGTTCTTTTGACTATTTTGATTCTTTTTTACATTTGATATTGGTTAGAGGAGAAATACAACTTATACATGTATCACAATTTACAACTATTCATCCTAATGAAAATTTAATTGGATCAATGTTCTGCATTTATGAATTTTGACAATTGATTTATTTTTTAAATTGAGTTGAATGGAATTTGATTTATATTTAGATGTATTTACGTAAAAGTAAAATTAATCATAAACTTGAGAGTTAAAATCACATTTGTTGATAAAGCTATAAATCTTGGTGGCGTTAAGTTAGAATTCATTCTAAA | |||||||||