| mature miRNA: TCGGACCAGGCTTCATTCC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|20282441|gb|BQ145370.1|BQ145370 NF006A03GS1F1020 Germinating Seed Medicago truncatula cDNA clone NF006A03GS 5', mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCCTCGTCCGAATTCGGCACGAGGTGCAAATGAANAGTTTGAAGCANAAATGGGTCTTACCCCTTAGTGATGATAATAACTTAATGATAATAACTAGTTTAAGATTATGTATGTTTTATGTGAACTCTANTGTTTGGTTTAAATCCAAACACTATTTTAGAGTGTAATATAATAAAGTTTCTGTGTGTTTTGTTTAAAAAANAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATNGTGAGTCGTATTACAATTCACTGGCCGTNGTTTTACAACGTCNNGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGNCGTATTAGCNAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGANTGGCAAATTGTAGCCGTTAATATTTTGTTAAAANTCNNCGTTAAATTTTTTGTTAAATCANCTCATTTTTTAACCAATAGGCCGAAATCGGNAAAATCCCTTATAANNAAAAAGAATAGACCCGAGATAGGGGTTGANANGTTGTTCCAGTTTAGAACAAGAGTCCCCTATTNAAGANCGTGGACTTCCACNTCAAGGGGNGAAAACCGTCTANAGGGGNNAANGGCCCNNTNCTGANCCATNNCCCTANTCNAGTTTTTNNGGGTCCGNGCGCCCNAAA | |||||||||
gi|209568612|gb|GE352656.1|GE352656 MEUBH74TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TTTCTTTACTTTTACAACCTTATGATATAAAAATATCTTTTTCAAAGAATCCAAGAAGTTTGCTTTTTTACTTGGAAGCACTTTTGAACAAGACATTTTTTGAGGATTTTGAGTCAATAGGGTTTCAAAAGAATGCTTGTAATAGGATATTGAACCCTATGGAAAGGTGTGAATCAAGTTTTGCTTCATTCAACATGATACATGGGTTGACTTGGGATGAAGTTTTGAGCAAAGGGACAAGACATTTTAGTGAAGATTTTAGTAGATTTTGTGATAGAAAAATGAGTGAAATTGTTGCTATGTTGGGTTGGAATAGGGCTTGGTCTGAACCACTATTGCAAGCTTTCTTTGTTGCTTCAAAGAGTGTTTGGATGGTTCATTTGTTGGCTAATTCAGTTCATCCAAGTTTACAAATATTTAGAGTTGATAAAGGAGTCAACTTTGATTCTGTTTACATGGAAGATATGGGTGGGGACAAGTCTTCAAGGTTGGTACCAAACATGGTTAGGATTATGGTTGCACCTGGTTTTTATGTCTATGGTAGTGCTGTTAAATGTAAGGTTCTTTGCAGGTACTTGACCAATAACCTCAGCAACAACAAACAAGACAAAGGTTTAAACCCATCACCTTAAATAAACCCATTTTATTTTTTATTTTTAATGTGGAATTGGAAAGTGTACTCTATTTGGTTTGGAATTTAGAATTTGGATCAGGTTCTATTGTTGTTATGATTCATGGCTTGGTTTTTTGTTGTTGATATTTTATAGTATGTATTTTTCATGCTTGAGTTGGGATATGATATGTCGGTATATGGAGTCAACGTGAACAATTTG | |||||||||
gi|11935327|gb|BE325087.2|BE325087 NF120A06ST1F1040 Developing stem Medicago truncatula cDNA clone NF120A06ST 5', mRNA sequence TCGGACCAGGCTT-CATTCC EST sequence (targeted fragment marked with yellow): CATGAATGTCCTAAACCAAGTTCAATTCGAAGACAACAACTTATTAGAGAATGTCCTATTCTTTCTAATATTGAACCAAGACAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGTCTTTCAGGTTGCAAGGTGTGAATAGGAAGTTGACAGCCATGAATAAGCTGCTGATGGAGGAAAATGATAGGTTGCAGAAGCAGGTGTCTCACCTGGTGTATGAGAATGGCTATTTTCGTCAAAACACCCAAAATGCAACCAAAGACACGAGTTGTGATTCAGTGGTGACTAGTGGTCAGCACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAAGCCTGGTCCGGATTCCATTGGAATCGTCGCTATTTCTCATGGTTGCACTGGTGTCGCAGACAAGAGCTTGTGGTCTAGTGGGACTAGAACCC | |||||||||
gi|57502775|gb|CX534056.1|CX534056 s13dNF0PE03MJ019_321874 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTCGTCCGATTTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTGAGATACATTCACAGGCTACAATCAAAAGATCTCTCACTTTGCCACAGTATGATCCCACTTGGATCATGTACAATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTACTGATATTCACCCTTTTGCACCAACTGAACAGGCTCAAGGTTATCAGGAAATGTTCGACAATTTGGGTGACCTGTTGTGTACCATCACTGGATTTGATTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCTGGAGAATATGCTGGACTCATGGTTATTCGTGCATACCATATGTCAAGAGGTGACCACCACCGCAATGTCTGCATTATACCAGTCTCAGCACATGGTACAAATCCTGCTAGTGCTGCTAGGTGTGGAATGAAAATTGTCACCATAGGAACTGATGCCAAGGGAAACATTAACATTGAGGAGTTGAAGAAGGCTGCTGAAACACACAAGGACAACTTATCTGCATTTATGGTTACATATCCTTCAACTCACGGTGTTTATGAAGAAGGTATTGATGATATTTGCAAGATCATCCATGATAATGGAGGCCAAGTATACATGGATGGTGCCAACATGA | |||||||||
gi|14873551|gb|BI268013.1|BI268013 NF119E01IN1F1007 Insect herbivory Medicago truncatula cDNA clone NF119E01IN 5', mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): ACTTTCAACTCCAACAACTCAATGCCTCAAAACAAGAACAACAATAGTTACTGATGCCTTTATCCATCTCATAGATTACTTGTCCACACATTTTTGTCTCTTTAAGAATCTTATAGCAGGTAATANAAGATTTTCATCAAATGAGAGTTGTTTTCTCAGAGGTCATCAAATTAATATTAAGCAAGTTTTCGGGCTTATCTCTCGTCGAGCTCCAAGAAACAAAGCAGGATTTGTTGTTTCTCCAAGATGTGTCTTGCCACTGACAGAAGNAGAATGTAGAAAAAGTTTTGGATGAAATAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGGCATTGCATGA | |||||||||
gi|6603940|gb|AJ388674.1|AJ388674 AJ388674 Medicago truncatula R108 Medicago truncatula cDNA clone MtNo029 similar to chloroplas TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GAGATCGCTCAATCCGTGTGGGAAGAGACACCGAGAAGAATGGCAAAGGTTACTTGGAAGACAGGCGTCCGGCTTCGAACATGGATCCATATGTGGTAACAGCCTTATTGGCAGAGAGTACATTATTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATTGCATTGAAAGTCTAAATCTATTGATTAATGGAGTCAGCACTGCTGCAGTCTGTGAGGAGCTTGAAAGCTCTTTCACTTTCCATTTAGATTTATTATATTATGAAGATCTTGTTTGGACAAATGAGGCTGCCATGCCTAGTTATTGGTTATGAGATGAATGCACATTGTATATCAGATATTACGTTGGGCTGTGTTTGCATATGGTATGGACAGANTTGCATTGAAGCCTGGTTTGGTAANATCCNCCAAAATTGGCTTTTATTTTTTTCCCCCCAAANAATCNNNCCNCNCNTNTCCCCCAAAAAAAACTTTCCCNAAAAAAAAAAAAAAAAAAAA | |||||||||