| mature miRNA: TGACAGAAGAGAGAGAGCACA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9679500|gb|AL379748.1|AL379748 MtBB47C04F1 MtBB Medicago truncatula cDNA clone MtBB47C04 T3, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TTCTTTTAATTTTTCTTTCTCTCTTCTCTCACCATGTCCTCTAAAGATGATGCTGCAAAATCCTTAACAGAAGAACAAATTGCTGAATTTAAAGAAGCTTTTTCACTCTTTGATAAAGATGGGGATGGTACAATTACCACAAAAGAATTAGGGACTGTTATGCGTTCCCTTGGTCAAAACCCAACTGAAGCTGAATTACAAGATATGATCAATGAAGTGGATGCAGATGGTAATGGTACAATTGATTTTCCAGAATTTTTAA | |||||||||
gi|157980086|gb|EX528358.1|EX528358 MTGland_A040_2007-06-23/MtGland_A040_G12_042_1 Medicago truncatula A17 glandular trichome Me TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): ACGGCCGGGGTGTTAGTTTATAGGCAGGCTCCTTGTAATGCATATATGGTAGGTTTTAATTTCCAGAGGGAAGCCTTGGAATTGGATTGATTGAATAGCTCTCAGCTAGCACTTTGGAGTTTAGTTTCAACAGTCCCACATTGATGGTCCTTTAACAACCAACAAGAAGATTTAGTTATAAAAGACCTTTGTATACATGTTGACAAAGTAACTGTTTGGACCCAATGATTCTCATTGTGCAGTCCACTTCATTTATAAAGATGATCATTAGTAGTATCTTTTGGTGAATTAATTTTAGAAAAAAATTAGGAGTTGAAAGAAAGCTTAATTTTAATTTTTCTTTCAATTGCAATTTTGTTTTCTATAATCAGAAGTGGTACATTCTGAAATCTATTTTACAAAATTGATAAGTTGATTATTTTCAAACTCACGGAAACCTTTAATCCACATTTTACTACTGTTGCACCACTGATCAGGTGTGTAATCTTTACCTTCACCTCGTCCTTGTTTATTATTTTTCTTTTTCTCTTCTGTCATATCAATTTTCTAGTTTAGTGGTTCACACTTGAATAAGTAATTCAAGAAACATTGATTTGGAACTACATTAGTTGTTCTCTTATGGCCATGTCTTCATTTTTATTCAAAATTGTGCACTATCCCGTCTAAAATTTGTTCTTATCATCGATTCANGGCCGTCCCTGAGAATTCGGANGCTCGGCTCTGGAAATGAAAAGANGCCAGTGATAAAATCAAAACATAATTTTTTTTNAAANAGCAATGTTCTATTTATATTTTTTAAAAGATAAATACAANGTGCCGTATATATGCGGTACACCTANAGNNAAAAATGACTACCGTATACNTGAGGAACTCCCACCTANACCAAATCAAGAGGAACTAATTCTAATAATCCTAAANANNCNNTCCNTGTNNGGAATGAAATAATCTTNGGGGNCTAANANNNNNANGGG | |||||||||
gi|83665525|gb|DW015933.1|DW015933 EST1224894 MTY Medicago truncatula cDNA clone MTYAB36, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CGGCCGGGGAAGGTTGTTGTGGTCTTCCCCTTGACTTCACCATAGCCTTCTCCTAAATCATTAATAATCTCTTATATTTCATTCTTTACCTTAACTTATGGATGGAAGTTGGGGTGAAGGAAAGAGAATCTATGAGTACAGAGAAGAAAATGAGTATGAAGTAGAAGTAGAAATAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGAGAAAAGGAAAAGGGTGGTGACTGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCTTGCCAAGTTGATAACTGTAATGCTGATCTAAGTGCTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAGTGCATCCGAATATCACTGAGAAGGAATTCATTGATGATGATCAAACATATTGAGCAGCATATATAGTTGAAATAAAGACACCATCCTTGAGTTCTTCATATTCAAATTGATGTTATTCGTGGAAGCTCTCTCTCTTCTGTCATCAAACTTTATCTCCCTCTTTATGCTAAGTTTGCTGCTCCATTAGATCGAGTATAATTTTAGCTGAAAACTAAAAATAACTTGCTTGA | |||||||||
gi|7571221|gb|AW696371.1|AW696371 NF105A09ST1F1068 Developing stem Medicago truncatula cDNA clone NF105A09ST 5', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTAAATACAAAACAAGAGAAAAGCTTTGTTTTGCATCAACAATTTGCAGAGATATATAAGACTTGTCTAAGTGCTACATTATAAGGTAATATTACATCAATTTTACAATTTTTTCTTCTCACAGTAAGTGGCAAAAAGAACAATATGTGCATCTTATTGCGCTTTTTCTCTTCTATCATTCATGATGTTGACGATGATTAGCATGTTGAGACTTCCTCTCTCTCTTGAAAGCTTTTAAGAGATCCATGCCAAGACCAATGTTGAGAATATTCATCCCAGCCATACCAAACAGAGCCAGTGGTAACTCCACACCCTTTCCAAATTTGTGAGCATCCTTGATGAGTTTCGCTGTGATGAGAACGTGAGACACACACCTTGCCACAAAGAAGGTGGTCCAATTCAGAAACCATTCTAACTTAACAATAACACTCCTTGCATCGCGAATACCGGCCATTCGTCTCACCTTTCTCACATGCAGAAAGATGGAATGCAGCTCACAGATTAGCGTGAGAATAAGGTAGTTGATGGTGATGTTTCGATACAAAGCAAGAGTGAAGCAGATAAGGAGAACGAGATGATGCAGAAGGATAGAAGGGATCCAACCACTATATAAACGGTAATGAAGCATATCCCACTGATCATAT | |||||||||
gi|13379193|gb|BG455868.1|BG455868 NF068F05PL1F1045 Phosphate starved leaf Medicago truncatula cDNA clone NF068F05PL 5', mRNA se TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TCTTCCCCTTGACTTCACCATAGCCTTCTCCTAAATCATTAATAATCTCTTATATTTCATTCTTTACCTTAACTTATGGATGGAAGTTGGGGTGAAGGAAAGAGAATCTATGAGTACAGAGAAGAAAATGAGTATGAAGTAGAAGTAGAAATAGAAGAAGAGGAAGATGTGAGTTATGGAGATGATGAGAAAAGGAAAAGGGTGGTGACTGATCATCTTTACAACAAGAAAGGGTCAAAAGCTGGAGGATCAGTGACACCTTCTTGCCAAGTTGATAACTGTAATGCTGATCTAAGTGCTGCTAAGCAGTACCATAAGCGCCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGGTATCAGAATTTGATGACTTAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACATAACGAGAGGCGTCGCAAAAGTGCATCCGAATATCACTGAGAAGGAATTCATTGATGATGATCAAACATATTGAGCAGCATATATAGTTGAAATAAAGACACCATCCTTGAGTTCTTCATATTCAAATTGATGTTATTTGTGGAAGCTCTCTCTCTTCTGTCATCAAACTTTATCTCCCTCTTTATGCT | |||||||||
gi|209567150|gb|GE347467.1|GE347467 MEUB761TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGACCCATAAAGCAGTGGCAATTTTGTAAAAACATATTATACCCTCTTCCTTCTCCCTTCTACGCATCTTCTCTTTCTTTTCTGTCAAACAGCCACCGTGTTCTCTCTTCTCACCACTGCCAGCCATCGTCTACCACCACCATCGTCCACATCGTTTACCATCTTCATCATCGCACCTTGAATCAACCACAACCATCGAACTCACGCTCCATATCCATTCGAAACTGAGCCCAGGTCGGATCATAACTCTGACGAGAGAGAACTGAGCCCAGATCCGTCAT | |||||||||
gi|30100960|gb|CB893791.1|CB893791 EST646583 HOGA Medicago truncatula cDNA clone HOGA-29C13, mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TCCAGTACGAATACGAACCGTGAAAGCGTGGCCTCTCGATCCTTTAGACCTTCGGAATTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCATGTTTAGTGAGAGCTGATTTCATTATGGTAATAGATGTGTTGAAAACATGCTCAAGTCTTTTTGTTAATCATAAAACCGGAACCCTTTTATTTTATCCCCAACCTGTTGTTTGAAGCTATCACATGCTTTAACTCCCAATGTGTTGTAAGTCATTTTATTAATTAGCTAGAGAGGGGAGTGGTTTGCACAATATCTTGTTTTTCTTTTACCTTTATTTTATGTTGGTAGCAAGTCCTATCTCTTTATTGCACTATCAAGTCTTATTTCTTTATTGTACCAATAAGTATTAAATATATTTGCGTATAATAACATGGAAGAACTGCTAACTATTAGTTTTTGTGTGATTAGTACTTCGAAATATTTAATGTTATGACTTTATTTGATAGTAGAACTAACTTTGTTTTTTCTCTTCTGTGAGATGCACTTCCGGCCATCATTTTACCATAATGCAGTTTTTGAGTTGGAAATTGATTTTAAATGGACACCAAGCGGTTCATGCAGCTTGTTGAGGAGAAAAAGAAGAAAATAATGGAGAGAAAGGAAGCTCCTTTGAAGTGGGAGCAGAAGCTGGAAGCTGCTGCCAAGGCAAAGGCCGATGCTGAAGCTAAAGAGAAGAAGTTGAAGACTGCAAAACATAAAAAAAGATCAGGCTCTGATACTGATAGTGATCGTGACTCTGATGATGAGAG | |||||||||