| mature miRNA: TGATTGAGCCGCGTCAATATC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11957586|gb|AW694845.2|AW694845 NF080F05ST1F1046 Developing stem Medicago truncatula cDNA clone NF080F05ST 5', mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGAGCGGTGGTTTGGGCGCGGTTCAATCATCGTACGGCGTCCCGGCGAAACGACGGTGGAGAGGTCTCATCATTGCAGTTCTCGGTCTCGTCATTCTCTCCATGCTCGTTCCTCTCGTCTTCCTTCTCGGTCTCCACAACAGTTTTCACACTTCTGGATATATATATGAACAGAGAAATACTCCTTCGGGAGATAAAACAAGTCATGTGAAGGAACTGATCACTAAGTTTGAACCAACTCTTCCCAAGGATGTTCTGAAGAATTATTCTAAAGGAGACAAGAATGGGATCGTAAATACCAATGAAGAAAAACATAGAGGTGTCAAGACGCCGCCGCCGCTGCCACCTAACGCTGCCCTGCAATCACCTCCAACTACTAATACTCCTAAAGTTCATAATCCTAAACATGGTCGCACTGAACAAGTCACCCACCCTAAAGACAAGTTCTGCTGGATGAAACTGGAACGTCGTGTGAGCT | |||||||||
gi|83665510|gb|DW015918.1|DW015918 EST1224879 MTY Medicago truncatula cDNA clone MTYAB20, mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): CGGCCGGGGGTTGGACTCAAAAGACTTCAACTCAGCTCTCTGTTGCTAATCTTCGTTCCTAGGGAAGTAAAACCTCTTCATGATGGAAATAAGTATTGCAAGGTGTCATCTAGAAGCTCAGGGGATATTCTTTTCTAACACTTTGAGAACACTAGGAAGGGAAAATTCTCAGAAACTTCCATGTAATGTTGCGTCCCTGCATTCTAGACGGGACCTCCACGTATTAGCCTCTTCCTATCAAACTCTTACTGCCATGTATCGAAGAAGGCTGTTTTTCTGTAGAACACAATCTATGCAAACTGGTTTAGAAGAATATGCATCATTACAATCCAGAGATAATCCTAACAATGATATTGATCCATCTATAGACTCAGAAGACGAGATCTTGTCACAACCACATACCAGTGAACAGATAAAGGCTCTGCTTGCTGATACCGAAAGAGCAAAAGTCACTAAGAAGCTTAGTGAAGCCAACCAACAAAATCGGTTCCTCAAAAGACAGTTGTATATAAAGGAGGATGCTTTGGTAAAATTTAAAAGTGAACTTGCTGTCTTAGAGCTCGAAGTTCAGGCTTTGGCCAGACTAGCAGAAGAAATAGCTAAATCTGGTATTCCAGAAGGTTCAAGGAAGATCAACGGAAAGTACATTCATACTCACCTTGTTACTAGATTAAAAGCTGTACACGAACAATTGAATGAGCAAATAAAGGGTGTTGATGCGGCACAATCAAAGGAGGTTTCCGTATTTTGGGTCGGCATGGCTGAGAGTGTGCAAGTTATGGGCAGCTTTGATGGTTGGAGCCGAGGA | |||||||||
gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGTTCTTCACAAGTTTAATTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATCAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCACAGCAGCAAGAAAACCAAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAGCAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGCCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTGTCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTGCTTCTTCAATCAAATGTTAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAANNNNNCTNNNAACCAAGCATTGCTTGAAGCTGTNGANNNNTTTGATCGAATTCATANNNNNNGATTTGNNNNTGGTTTTGNNNGNNCATGGTCTTCANTNNNG | |||||||||
gi|11904027|gb|BF639869.1|BF639869 NF027E05IN1F1038 Insect herbivory Medicago truncatula cDNA clone NF027E05IN 5', mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): GAAAGGAAGAGATTGAAGAAAGCGACGATGAAGAGCGGTGGTTTGGGCGCGGTTCAATCATCGTACGGCGTCCCGGCTGAAACGACGGTGGAGAGGTCTCATCATTGCAGTTCTCGGTCTCGTCATTCTCTCCATGCTCGTTCCTCTCGTCTTCCTTCTCGGTCTCCACAACAGTTTTTACACTTCTGGATATATATATGAACAGAGAAATACT | |||||||||
gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): ATCCAGCTTCAGCAGAGTATATTTTATCAGCTATTTAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAATCCTTTTCAAAGGGCTTCTTTCTACATGAAGGAAGCCTTACAGTTAATGCTTCATTCAAACGGTAACAATCTCACGGCTTTTTCGCCGATTAGTTTCATTTTCAAAATTGGAGCTTATAAGTCTTTTTCCGAAATATCACCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAATCCCTCATTGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATTGATTTCGATATCGGGTTTGGAGTACAATGGTCATCTTTTATGCAAGAGATTGTACTAAGAAGTAACGGTAAGCCTTCACTTAAGATTACTGCTGTTGTATCACCCTCGTCATGCAACGAGATTGAGCTCAATTTCACCCAAGAAAATTTGAGTCAGTATGCAAAAGACCTCAATATATTGTTTGAGTTCAACGTTTTGAACATTGAATCGTTGAACTTGCCGTCGTGTCCTCTACCGGGTCATTTCTTTGATAGTAATGAAGCCATTGGTGTGAACTTTCCTGTTTCAGTTTCATAAGTAATCCATCATGCTTCCCTGTGGCTCTTCACTTTTTAAAGCAGCTAAGGCCGAAAATTGTCGTAACTTTGGACAAAAACTGCGACCGAATGGATGTCCCGCTTCCCTACCATGTTTGTCACGTTCTTTCATGGTACTCAGCTTTGCTTGAA | |||||||||
gi|151392272|gb|EV262150.1|EV262150 MTYES03TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): GACACAAAAGCTAATGTTATTTGTTGGACTCAAAAGACTTCAACTCAGCTCTCTGTTGCTAATCTTCGTTCCTAGGGAAGTAAAACCTCTTCATGATGGAAATAAGTATTGCAAGGTGTCATCTAGAAGCTCAGGGGATATTCTTTTCTAACACTTTGAGAACACTAGGAAGGGAAAATTCTCAGAAACTTCCATGTAATGTTGCGTCCCTGCATTCTAGACGGGACCTCCACGTATTAGCCTCTTCCTATCAAACTCTTACTGCCATGTATCGAAGAAGGCTGTTTTTCTGTAGAACACAATCTATGCAAACTGGTTTAGAAGAATATGCATCATTACAATCCAGAGATAATCCTAACGATGATATTGATCCATCTATAGACTCAGAAGACGAGATCTTGTCACAACCACATACCAGTGAACAGATAAAGGCTCTGCTTGCTGATACCGAAAGAGCAAAAGTCACTAAGAAGCTTAGTGAAGCCAACCAACAAAATCGGTTCCTCAAAAGACAGTTGTATATAAAGGAGGATGCTTTGGTAAAATTTAAAAGTGAACTTGCTGTCTTAGAGCTCGAAGTTCAGGCTTTGGCCAGCCTAGCAGAAGAAATAGCTAAATCTGGTATTCCAGAAGTTCAAGGAAGATCAACGGAAAGTACATTCATACTCACCTTGTTACTAGATTAAAAGCTGTACACGAACAATTGAATGAGCAAATAAAGGGTGTTGATGCGGCACAATC | |||||||||
gi|27404216|gb|CA917286.1|CA917286 EST641433 GPOD Medicago truncatula cDNA clone GPOD-35P5, mRNA sequence TGATTGAGCCGCGTCAATATC EST sequence (targeted fragment marked with yellow): GATAAAAAAGAGAATGAGAAAGGAAGAGATTGAAGAAAGCGACGATGAAGAGCGGTGGTTTGGGCGCGGTTCAATCATCGTACGGCGTCCCGGCGAAACGACGGTGGAGAGGTCTCATCATTGCAGTTCTCGGTCTCGTCATTCTCTCCATGCTCGTTCCTCTCGTCTTCCTTCTCGGTCTCCACAACAGTTTTCACACTTCTGGATATATATATGAACAGAGAAATACTCCTTCGAGTCCAAATATTATTGAATACAATAGGCATGATGTTCGCCATAAAGAGGATAAGTCTGAGGGAGATAAAACAAGTCATGTGAAGGAACTGATCACTAAGTTTGAACCAACTCTTCCCAAGGATGTTCTGAAGAATTATTCTAAAGGAGACAAGAATGGGATCGTAAATACCAATGAAGAAAAACATAGAGGTGTCAAGACGCCGCCGCCGCTGCCACCTAACGCTGCCCTGCAATCACCTCCAACTACTAATACTCCTAAAGTTCATAATCCTAAACATGGTCGCACTGAACAAGTCACCCACCCTAAGACAAGTTCTGCTGATGAAACTGGAACGTCGTGTGAGCTCACATATGGTAGTTACTGTCTGTGGCAACAGAACATAAAGAAGTTATGAAAGAC | |||||||||