| mature miRNA: TGATTGAGTCGTGCCAATATC species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|20455996|gb|BQ255243.1|BQ255243 MTNAE61TKM KVKC Medicago truncatula cDNA clone pKVKC-5F1, mRNA sequence TGATTGAGTCGTGCCAATATC EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGTTCTTCACAAGTTTAATTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATCAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCACAGCAGCAAGAAAACCAAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAGCAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGCCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTGTCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTGCTTCTTCAATCAAATGTTAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAANNNNNCTNNNAACCAAGCATTGCTTGAAGCTGTNGANNNNTTTGATCGAATTCATANNNNNNGATTTGNNNNTGGTTTTGNNNGNNCATGGTCTTCANTNNNG | |||||||||
gi|260526242|gb|GT141552.1|GT141552 METBT43TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence TGATTGAGTCGTGCCAATATC EST sequence (targeted fragment marked with yellow): CTTAACAAGGTGATTTGTATCTGCAGAAGGCTCTGGAGCTTAGAGGACTCGAGGAGGAATCCATAACATTAACACACTCGTAGAGATAATTCATTCTGTGCGATGTCAAGTTGACTTATCTAAGATATTGAACCGCACGCATACGATACTGCACATGCCGCACATTTAGAGGCATTGTTAGAAGAAAGTCGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGCGTGAGAACCATATGCATCTGTGAGACAGGAACAATTGATCTTGATAAGACTCGTATATGGCTAGAGGAGATTCTTTGGGAGAAGAAATATGATATGGATGTATACCGTTGCAAAGGAGTCTTAAATGTTCAAAACTCTGATGAATTGCATACTTTGCAGGCAGTGAGAGAACTATATGAGATTGTTCCCGCTCGAAAGTGGAAGAAAGAAGAAAACAGGATGAACAAGATAGTATTTATAGGTCATAATTTGAAAGAAGATGTTCTAATCAATTCCTTGAAAGCTCTTGCAACCTGTTAAGCTGTGTATTTGTTTCCTTGTGTGGGTATAAAGATTAATAGTTAACTGATGATTGTACGATTCAATCAAATTAGTGTGTTAATTAGCAGTGTTATGTTAGTTTTTAGGATTTTGAGAAACTTGTTATAAAGTTAGTACTTATGTTAGTTTTTAAGGTTCTGGGTTTGAACCCTAAACCTCTTTCTTAAAAGTTATTTGTAAGGTTGAGTTCATATATTAATCTTAGGCTTTATACTACATGTCTAATCTGTTTTCCTACCATCTCCCCAATTTTAATGATGGGTGGTACTGGTGACGAAAAAAAAAAAAAAAAAAA | |||||||||
gi|33106441|gb|CF069782.1|CF069782 EST670503 MTUS Medicago truncatula cDNA clone MTUS-24C6, mRNA sequence TGATTGAGTCGTGCCAATATC EST sequence (targeted fragment marked with yellow): ATCCAGCTTCAGCAGAGTATATTTTATCAGCTATTTAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAATCCTTTTCAAAGGGCTTCTTTCTACATGAAGGAAGCCTTACAGTTAATGCTTCATTCAAACGGTAACAATCTCACGGCTTTTTCGCCGATTAGTTTCATTTTCAAAATTGGAGCTTATAAGTCTTTTTCCGAAATATCACCTGTTCTTCAGTTTGCCAACTTTACTTGTAATCAATCCCTCATTGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATTGATTTCGATATCGGGTTTGGAGTACAATGGTCATCTTTTATGCAAGAGATTGTACTAAGAAGTAACGGTAAGCCTTCACTTAAGATTACTGCTGTTGTATCACCCTCGTCATGCAACGAGATTGAGCTCAATTTCACCCAAGAAAATTTGAGTCAGTATGCAAAAGACCTCAATATATTGTTTGAGTTCAACGTTTTGAACATTGAATCGTTGAACTTGCCGTCGTGTCCTCTACCGGGTCATTTCTTTGATAGTAATGAAGCCATTGGTGTGAACTTTCCTGTTTCAGTTTCATAAGTAATCCATCATGCTTCCCTGTGGCTCTTCACTTTTTAAAGCAGCTAAGGCCGAAAATTGTCGTAACTTTGGACAAAAACTGCGACCGAATGGATGTCCCGCTTCCCTACCATGTTTGTCACGTTCTTTCATGGTACTCAGCTTTGCTTGAA | |||||||||
gi|20293705|gb|BQ156646.1|BQ156646 NF095B03IR1F1029 Irradiated Medicago truncatula cDNA clone NF095B03IR 5', mRNA sequence TGATTGAGTCGTGCCAATATC EST sequence (targeted fragment marked with yellow): CTCATCTTCATTTCCTGAAGCATATTTTCAGATAGCATTTGCGGACATTGTAATTCTTAACAAGGTTGATTTGGTATCTGCAGAAGGCTCTGGAGCTTTAGAGGAACTCGAGGAGGAAATCCATAACATTAACACACTCGTAGAGATAATTCATTCTGTGCGATGTCAAGTTGACTTATCTAAGATATTGAACCGCCACGCATACGATACTGCACATGCCGCACATTTAGAGGCATTGTTAGAAGAANGTCGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGCGTGAGAACCATATGCATCTGTGAGACAGGAACAATTGATCTTGATAAGACTCGTATATGGCTAGAGGAGATTCTTTGGGAGAAGAAATATGATATGGATGTATACCGTTGCAAAGGAGTCTTAAATGTTCAAAACTCTGATGAATTGCATACTTTGCAGGCAGTGAGAGAACTATATGAGATTGTTCCCGCTCGAAAGTGGAAGAAAGAAGAAAACAGGATGAACAAGATAGTATTTATAGGTCATAATCTGAAAGAAGATGTTCTAATCAATTCCTTGAAAGCTCTTGCAACCTGTTAAGCTGTGTATTTGTTTCCTTGTGTGGGTATAAAGATTAATAGTTAACTGATGATTGTACGATTCAATCAAAT | |||||||||