| mature miRNA: TGCCAAAGGAGAGCTGCCCTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|13783492|gb|BG648380.1|BG648380 EST509999 HOGA Medicago truncatula cDNA clone pHOGA-19J15 5' end, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): ATAATAGACTCCGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGATGTTGTGTGCTCCTTGTCAGACCCATCTGGACAGATGGGGAGGGTCGTAAGTGTTGACGTGTTAGTGGATTTGGAAAACATTCAAGGAAATGTATTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGTTCCATTTCGGAAGGTGATTGCGTAATTAACGGTCCGTGGCTTGGTCAGGTTCAAAGGGTGGTGGACAGATTAAGTGTATTGTTTGATGACGGGACTAAGTACGAGATCACTACCTTGGAAAATGATAAGATTTTAGCACAAAATCCTAATTTTCTTGAAGATTTGCAGTATCCATACTATCCAGGGCAGAGAGTGAAGGTTAAGTTCTCGACCGCTTCTAAATCAGCTAGATGGCT | |||||||||
gi|13781151|gb|BG646039.1|BG646039 EST507658 KV3 Medicago truncatula cDNA clone pKV3-48E12 5' end, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): TCTCCTTTGGCAATTCGGAGTCATAATAGACCTCCAGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGATGGTTGTGTGCTCCTTGTCAGACCCATCTGGACAGATGGGGGAGGGGGTCGTAAGTGTTGACCGTGTTAGTGGAATTTGGAAAACATTCAAGGGAAATGTATTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGTTCCATTTCGGAAGGTGATTGCGTAATTAACGGTCCGTGGCTTGGTCAGGTTCAAGGGGTGTGG | |||||||||
gi|33105142|gb|CF068483.1|CF068483 EST669204 MTUS Medicago truncatula cDNA clone MTUS-8E11, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): CAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATCCACACTTTCACTAGGACAAATCTCCTTTGGCATCCTTTGATTATCTTAGTCGGTTTCCTCAA | |||||||||
gi|13373791|gb|BG454997.1|BG454997 NF112E08LF1F1056 Developing leaf Medicago truncatula cDNA clone NF112E08LF 5', mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): AATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGNGTTGATTCTTAACATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCT | |||||||||
gi|27410064|gb|CA923134.1|CA923134 EST640852 MTUS Medicago truncatula cDNA clone MTUS-63E1, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): ATCAGGAAAGCATTCTCGAATTTAGAAAATATGACACTCCTTCGAAACAATGGTTTGAACAATACATCACAACGGCTAGAAAAAGAGAAGAACCAGTACCTAAGGTTAAAACTGTAGATATATATACCCAGCAAAGTATTTGCTACTAAAAGAAAGCTGATATAGACTCTGATAACAATATGTATCCTGCTGTATCTATGACCATACCACAAATAATAATGACAACGATGAATAAATAAAAAGGCTGTAATGTACTTCATATTTCATCATATCTTTTGCTCCGTTAGTTTTTACCACCGTGAAGTATCTTTGTTCTGAAAGATTATGTAAAATCACCTTCTCCACTGAGGTTGAGTCATCTTATCAGTCCCGTCCCTTGAAGATGACAAAGATTTATCAGTCCTCGCAACTCCTCTTCCGCTCAAAGTTATCAGCTTTTCTACTCTTGGGGAAAATGAACCTGACTTGCTGTTAAGTGAAGATGAAAGTGAATGCCTCCTGGTAAAACTGTTTTTGTCTATGATATCAGTAGCAAATCTTGGGGAGCCTTGTCCCCTTAGTCTAGCTTTTGCTGATTCAGTTGGAGCCATATAACTCGGCACTCTTGGACTTGGAGTGTTGTGTATCTCATTTTCTTGATCATTAAAATTAGCAGGCAGTGAAGCTCTTCTTTGGTAATTGTTGCTGATAATTTTGTCACCACCATTCAAGTCTTCGCTAACTCCTATTTCTTCATCTCCTACCTTCTTCATACTAGTCTGTAAGACAGCGTTAGGATCATTATGA | |||||||||
gi|20281110|gb|BQ144051.1|BQ144051 NF028G06DT1F1049 Drought Medicago truncatula cDNA clone NF028G06DT 5', mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): TGATACGCCAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGAATTCGGAGTCATAATAGACTCCAGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGAGGGGGGGCCCGGTACCCATTCGCCCTATAGTGAGTCGTATTACCAATTCACTGGGCCGTCGGTTTACAACGTCGGGACTGGGAAAACCCTTGGCGTTACCCAACCTAATCGGCCTTGCAGCACATTCCCCCTTTCCCAGCCTGGGGTAAATAAGGAGAAAGAGGCCCGCCCCGATTCCGCCCTTCCAAACCAGGGTGGGCCACCCCTGAAATGGGCGAAATGGGCACACTTGGTACAACCCTTAATACATCTTGTTAAAATTCGCGG | |||||||||
gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): AAAACAGAAAAATATCTCATAATTTTAGCTACTAGCTGGTTTATATTTGTTGTTTGAAGTGTTTCGTTCTGTGAAATATTTCATTCGCAATTGGGCATATCTCCTTTGGCACTTTGGAGTCCTTGATTGATTCCTATTATCCTGGCGGGCAAATCTTCTTTGGCATCAGATCTCTGGTTTCAGTAGTTGAGATAATCTTCCGGAGATACTGAATATCAAATGCATCTGCCCAGTATAAACTGAACGTGATGTTTAATTTTCAGGACTTGTTAAATGGTGATGGTAGAAAAGAGAATTATGAACAGAATCTTGAGTGTAGTTCCTTTTTCCTTCCACGAGTGGCCTTTGAACTTTTCTCCAGTGTTAAATCCAGCATATTCCAAACACTTGGTGGAACTTCCATTTCAGGAGCATTTTCCTCATTGCAATCTCTATTGACCCAAACAGACTCTATTTATGTTCGTGTGTTTGAAGAAAGAATGGATCTCATGCGAGCAGTAATTGTTGGTGCATCTGGAACTCCGTATCATGACGGGTTGTTCTTCTTTGATATATGTTTCCCTCCAGAGTATCCTAACGAACCACCAGTAAGCTTTTAAGTGTAGTTTGCAGTGCTTGTATTTTTTTTTTACAGCACCATTGTTTATAAGGCCCTTCACTTATGTTCAAGATCTCTAGATAAAAGCTCCAACTCTGAACAAACTCTAATGTTATCAATGTGATCTTTGAATGCAGATGGTGCACTACAATTCTGGCGGGCTCCGCTTAAATCCTAATTTATATGAATCAGGGGAAATCT | |||||||||
gi|7566618|gb|AW691882.1|AW691882 NF045B07ST1F1000 Developing stem Medicago truncatula cDNA clone NF045B07ST 5', mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): CTTCACAAACAGAGAGAGAGAGAGAAAAAAAAAGTGTCTCTAAAATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTTGAAGATTCAAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGGTGTT | |||||||||
gi|33105142|gb|CF068483.1|CF068483 EST669204 MTUS Medicago truncatula cDNA clone MTUS-8E11, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): CAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATCCACACTTTCACTAGGACAAATCTCCTTTGGCATCCTTTGATTATCTTAGTCGGTTTCCTCAA | |||||||||
gi|33105142|gb|CF068483.1|CF068483 EST669204 MTUS Medicago truncatula cDNA clone MTUS-8E11, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): CAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATCCACACTTTCACTAGGACAAATCTCCTTTGGCATCCTTTGATTATCTTAGTCGGTTTCCTCAA | |||||||||
gi|27811035|gb|CB065457.1|CB065457 EST645138 HOGA Medicago truncatula cDNA clone HOGA-19E23, mRNA sequence TGCCAAAGGAGAGCTGCCCTG EST sequence (targeted fragment marked with yellow): GAGAGAAAAAAAAAGTGTCTCTAAATATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATTCCACACTTTCACTAGGACAAATCTCCTTTGGCATCTTTTGATTATCTTAGTCGGTTTCCTCAACCT | |||||||||