| mature miRNA: TGCCAAAGGAGAGCTGCTCTT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|10520166|gb|BE942407.1|BE942407 EST421986 MGHG Medicago truncatula cDNA clone pMGHG-8M2, mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): CAGTTAGCTAAGTGACAAGAATCATATAAAACAATATGGCCTTCACCACAAACATTGTTCATGTCCTCACCTTATTACTAGTTATAATAACCACTTCAATGTTTACAGTTACTATGGCAAACAAAGATTGGCCCTCTTTTGGCAATTTCAACTACACTGATTGGTGGTCCAGATTTGGAAACCATCATCATCAAATAAATAAGACTGAACAACAACCTAAGAACATCATTGTTGGTGGCTCTCAAAATTGGCACTTTGGCTATAACTACTCTGATTGGGCTATTAAGAATGGTCCTTTTTACCTCAATGATACTCTCGTTTTCAAGTATGATGCTCCAAATGCAACAAGTTTCCCACACAGCGTATACATGTTTCCAACTTGGCAAAGCTTCATGAAATGTGATGTGAAGAAGGCTAAGATGGTGGCAAATCACACACAAGGTGTTGGAGAGGGATTCAAGTTCGTGTTAAACAAGTGGAAGCCTTATTACTTTTCATGTGGTGAGAAAAATGGATTACATTGCAACGTCGGACAAATGAAGTTCGCTGTTATGCCAATGCTTCGTCCTTTCTGGTCATCATGGCCTTGAAAAAAATGTTCATTTGCAACAACTTGACATAGTTAACTAGCTCTTGGAAAATTGGAATTGCATGCTGCAGCTTTTGAATTTT | |||||||||
gi|27407187|gb|CA920257.1|CA920257 EST637975 MTUS Medicago truncatula cDNA clone MTUS-25D7, mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): ATCAAATATTTTGCATGTATTTAATTTTTAGTATAAATATTTTGTTAACGTATCTTAGTTGTATCGTATCCTGAATTTTAAAAATATCATGCATCCGCGTACCCGTATTGTATCGCACTCGTACAACGTATTCGGGCTTCATAGATAAGTGCAAACCTTCACTCCACAGTGAATCTGCCAAGTCTGACAAACTCCTTAAAGCTTAGATGTCCATCACTATCAGAATCAGCCTCACGAACAAAGTCGCTCACTTCTTCATTGGTCGCCTTAATGCCTTGATTTGTCAAGTAATAATGCAACTCAGATGCAGTGACAAAACCATTATGATCCGTGTTAGGCTTAGAGAAAGCTATGAGAAGCTCTTCTTTGGTGAAGTCAATGGTACCATTTCCGTCAGTGGCAGACTTATTCCTCGCTACCATCAAGCCGAAATCAGTTGGGTTTAGGCCAGTAGACCGTATTAGAGTGTCAAGTTCTTCATTATCAATAGAAACATCTCCATCCTTATCGATGAGGCT | |||||||||
gi|11934552|gb|BE325108.2|BE325108 NF114E05ST1F1038 Developing stem Medicago truncatula cDNA clone NF114E05ST 5', mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): GCAAAAGAAAATTCAAGAAATTAAAAAGCTAAGATAGTGAAAATGGTTTCTTGGATTCGAGTACTACTTCTTATTTGTTGCATATTTCCAGCGTTGGTCGAGTGCAAAGTTAGGCACTACAAATTTCATGTGGTGGCCAAAAATACAAGTAGATTATGTTCAAGCAAAGCAATTGTCACAGTTAATGGGAAGTTTCCGGGACCCACTCTTTATGCCAGGGAAGATGATACAGTGATAGTCAAAGTTCGTAATCAAGTCAACAACAATATTACCATCCATTGGCATGGTATTAGGCAATTGAGAACAGGTTGGGCTGATGGACCTGCATATATCACACAATGTCCAATTCAACCTGGACATAGTTATACATACAATTTCACCATTACTGGTGCAAAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCGTAAGATCAACTGTCCATGGTGCCATTGTGTATTTTACCAAAGAAAG | |||||||||
gi|57568911|gb|CX541886.1|CX541886 s13dNF0BA12GS097_467080 Germinating Seed Medicago truncatula cDNA, mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): GATTTTAAGTCTCATAGTAACATTTCCAAGACCAAAATGGGTTTTTCCCTTTTTTTCATCACTTAAAATCCAAGTGTTCATTTTTTCATTAATTAATTTTGGTTTCTTTGAGGTTGCATTGGCTAGTACAACAAGACACTACCATTTTGATATAAGGTATGAAAATGTAACAAGATTGTGTCACAAAAAGAGCATGGTAACCGTGAATGGTCAATTTCCGGGGCCTCGCATCGTCGCTAGAGAAGGTGATCGTCTTATCATCAAAGTGGTTAACCATGTGCAGAACAACATCTCCATTCATTGGCATGGCATTAGACAACTTCAGTCAGGATGGGCTGATGGACCAGCATATGTGACACAATGCCCCATCCAAACAGGTCAAAGCTATGTTTACAATTACACAATTAAAGGCCAAAGAGGAACACTCTTTTGGCATGCTCATATATCTTGGTTAAGGTCAACACTTTATGGTCCTCTCATTATTCTTCCCAAGAAAAAATGTTCAATACCCTTTTGCAAAACCTCACAAGGAAGTTCCAATCATATTTGGTGAATGGTTCAATACAGATCCTGAGGCAATCATTGCACAAGCTCTACAAACTGGTGGAGGACCAAATGTCTCTGATGCATA | |||||||||
gi|83668810|gb|DW019218.1|DW019218 EST1228179 MTY Medicago truncatula cDNA clone MTYBG32, mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): CGGCCGGGGGAATGCAACTTAAGGACCTGAAGTTGCAAAAGAAAATTCAAGAAATTAAAAAGCTAAGATAGTGAAAATGGTTTCTTGGATTCGAGTACTACTTCTTATTTGTTGCATATTTCCAGCGTTGGTCGAGTGCAAAGTTAGGCACTACAAATTTCATGTGGTGGCCAAAAATACAAGTAGATTATGTTCAAGCAAAGCAATTGTCACAGTTAATGGGAAGTTTCCGGGACCCACTCTTTATGCCAGGGAAGATGATACAGTGATAGTCAAAGTTCGTAATCAAGTCAACAACAATATTACCATCCATTGGCATGGTATTAGGCAATTGAGAACAAGTTGGGCTGATGGACCTGCATATATCGCACAATGTCCAATTCAACCTGGACATAGTTATACATACAATTTCACCATTACTGGTCAAAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCTAAGATCAACTGTCCATGGTGCCATTGTTATTTTACCAAAGAAAGGTGTTCCTTATCCTTTCCCAAAGCCAGATGATGAATTGGTTTTGGTATTAGGAGAGTGGTGGAAATCTGATACTGAAGCTGTTATCAATGAAGCTCTAAAATCAGGATTGGCACCAAATGTTTCAGATGCTCATACCATAAATGGTCTTCCTGGGACAGTGGCCAATTGTTCTACACAAGATGTTTACAAACTACCTGTGGAGAGTGGCAAAACCTATCTACTAAGAATCATCAATGCTGCACTCAATGAAGAACTTTTCTTCAAAATAGCTGGCCACAAACTCACAGTAGTAGAAGTTGATGCAACATACACAAAACCATTCCAAATTGAAACAATTGTGATAGCACCTGGTCAAACAACAAATGTACTATTAAAAGCAAACCAA | |||||||||
gi|27406756|gb|CA919826.1|CA919826 EST637544 MTUS Medicago truncatula cDNA clone MTUS-18G1, mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): ATTGATGTAGTTGTTGATATCCAAACTTATGAATGAAAATAGAATATAATTTTTACGTAGACTTTACAACTTTTATTTTGATCATGTATTATTTTTCGTAAATCGTGACTTTTATGATTATATAGTATTGAAGAGTAATTAATGCTTATTTTTTTATCAAATATTTTGCATGCATATAAATTTTAGTATAAATATTTTGTTAACGTATCTTAACTGTATCGTATCCTGAATTTTAAAAATATCGTGTATCCGCGTACCCGTATCGTATCACACTCGTACTACGTATTCGGGCTTCATAGGCAGGAGCAAACCTTCACTCCACAGTGAATCTGCCAAGTCTGACAAACTCCTTAAAGCTTAGATGTCCATCACCATCAGAATCAGCCGCACGAACATACTCGTTCGCTTCTTCAATGGTCATCTTAATGCCTTGATTTGTAAAGTAACAATGCAACTCAGATGCAGTGACAAAACCATTATGATCCGTGTCAGGCTTAGAGAAAACTATGAGAAGCTCTTCTTTGGTGAAATCAATGGTACCATTTCCGTCAGTGGCAGACTTACTCCTCGCTACCATCAAGCCGAAATCAGTTGGGTTTAGGCCAGTAGACCGTA | |||||||||
gi|20273189|gb|BQ137063.1|BQ137063 NF067A06STT1F104 Developing stem Medicago truncatula cDNA clone NF067A06ST 5', mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): CTGATTCGCCAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCCAAAATGTGACAAGATTGTGCCACAACAAGAGGATGGTGACAGTGAACGGTCAGTTTCCAGGACCTCGCATTATGGCTAGAGAAGGAGACCGTCTTGTTATCAAAGTTGTTAACAATGTGCAAAACAACATCTCGATTCACTGGCACGGCATTCGACAACTTCAATCAGGATGGGCTGATGGACCGGCATATGTGACTCAATGCCCCATCCAAACAGGTCAAAGCTATGTTTACAATTACACAATTAAAGGCCAAAGAGGAACACTCTTTTGGCATGCTCATATATCTTGGTTAAGATCAACACTCTATGGTCCTCTCATCATTCTTCCCAAGAAAAATGTTCCATATCCTTTTGCAAAACCCCACAAGGAAGTTCCTATGATATTTGGAGAATGGTTCAATGCAGATACTGAGGCCATCATAGCACAAGCCCTGCAAACTGGGGGAGGACCAAATGTTTCTGAAGCCTACACAATCAATGGACTTCCAGGGCCATTGTATAACTGCTCTAAAAAAGATACATTCAAGCTAAAGGTGAAGCCTGGAAAGACTTACCTTCTACGTTTGATCAATGCTGCACTAAAATGATGAGTTATTCTTCAGCGTTGCAAATCACACCCCTCAAAGTTGTTGAAGCCGACGCTATTTACCGTGAACCT | |||||||||
gi|8746401|gb|BE203130.1|BE203130 EST403152 KV1 Medicago truncatula cDNA clone pKV1-4B5, mRNA sequence TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): ATGAATTGAAAGATTCTAAAATTTTGCAGGGCGATAACTGTATAGTTGAAGGGGGAGATGATACATTGAAGAGCTCATCTCCTTTGGTAAAGACAGAAGTGGGGACCAGTTCATCAGGTCATGATTGTGCAGAAAGCCATTCAATGCCTCTGGGGGT | |||||||||
gi|11910851|gb|BF645722.1|BF645722 NF028H03EC1F1031 Elicited cell culture Medicago truncatula cDNA clone NF028H03EC 5', mRNA seq TGCCAAAGGAGAGCTGCTCTT EST sequence (targeted fragment marked with yellow): GTATAGTTGAAGTTGGAGATGATACATTGAAGAGCTCATCTCCTTTGGTAAAGACAGAAGTGGGGACCAGTTCATCAGGTAATGATTGTTCAGAAAGCCATTCAATGCCTCTGGGGGTATCATTGTGCTCTGATGACTCATTTGGTAAACCGGGTGTTCCTCAAGTTGATGAATTAATAACTGTCCCAGACACTGTTCGTCTTTCATTGTCCCAATTAAAGGATGAAGAAAATGTCGGGGTATCTGAAAGTAAATCAGTTGAACTGTCTGAATCCCAGAATGACACGGAGGGATCCAATGCAGATCAGAGAAATTGTTCTGATAGGTTGCAATCTGGCCATCTAGTGACTGTCAGCCATACTAGTGAGGATGCATTGTCAATGAAAGGCACAAAATTAGAAGTTGAAATTAGCGATAAAATAAATGCTACTCCCATTTCTGAACTTGAGGGTGATCCAGAAAGGCTTACATCTAAAAACATTGACGCTCTTCCTTTTTGCTCGCTGGTGAAGGAAGATAATGATGTGTTAATTCAGGACGAACAAAAGGATCCTTTGATTCTGGAGGGAAGTTGTACAGATGGCACCAAGGTGCAGGATTCCATTGTCAGTCCTTTACCACAGGAGAAATCANAAATGCTCTGAGCTGAGATGGTTCATCAAAT | |||||||||