miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCCAAAGGAGAGTTGCCCTG
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|9687532|gb|AL387781.1|AL387781 MtBC44F08R1 MtBC Medicago truncatula cDNA clone MtBC44F08 T7, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|| ||||||||||||| ||.
ACTGTTTCCTCTCAACTTGAT

EST sequence (targeted fragment marked with yellow):
TTGNGTATCCCTTGAAACNTGATGATATCANAGGATCTTAAACCCTTGAACGATAGAGTTCTGATAAAGATCGAAAAGGCGGAAGAAAAGACTTCAGGCGGTTTGTATCTTACAGAGGCGACCAAGGAGAAACCTTCATTNNTGGAACNAGTGGTAGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTGCTTCTGGGAACACAGTTTTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATAACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAGGAATCCAATTGTAAGACGAACACAAAATCTCTTAGGAATCCAATTGTAAGATGAACACAAAATTTTCGCCTTGTTTTGATTACCAAGTGATTCCTAACGGGAACTGGGTTTTCAAGCATCTGGTTGTTGCGTTAGTGAGTTTGAATTCATGTATCAGTTTATAGTTCAACTCTCCTTTGTCATTTATTAGATAAAATCTTGTGTTACCACCAAAAAAAAAAAAAACTGAGGGGC



gi|260525737|gb|GT141047.1|GT141047 METBN47TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|| ||||||||||||| ||.
ACTGTTTCCTCTCAACTTGAT

EST sequence (targeted fragment marked with yellow):
CTCAAGGGGGTGAGGTGGTTGCTGTCGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCGGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTTAATGGTGAAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAACGATAGAGTTCTGATAAAGATCGAAAAGGCGGAAGAAAAGACTTCAGGCGGTTTGTATCTTACAGAGGCGACCAAGGAGAAACCTTCATTTGGAACAGTGGTAGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTGCTTCTGGGAACACAGTTTTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACGTAACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAGGAATCCAATTGTAAGACGAACACAAAATCTCTTAGGAATCCAATTGTAAGATGAACACAAAATTTTCGCCTTGTTTTGATTACCAAGTGATTCCTAACGGGAACTGGGTTTTCAAGCATCTGGTTGTTGCGTTAGTGAGTTTGAATTCATGTATCAGTTTATAGTTCAACTCTCCTTTGTCATTTATTAGATAAGATCTTGTGTTACCACCAGATGAGCAAAATATTTGAGAAACAAATAGGAACTATAAATATTCAATCAAATTCATGGCTGTTGCTTTCCAAAAAAAAAAAAAAA



gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
||||||||.||| |||||| |
ACGGTTTCTTCTAAACGGG-C

EST sequence (targeted fragment marked with yellow):
AAAACAGAAAAATATCTCATAATTTTAGCTACTAGCTGGTTTATATTTGTTGTTTGAAGTGTTTCGTTCTGTGAAATATTTCATTCGCAATTGGGCATATCTCCTTTGGCACTTTGGAGTCCTTGATTGATTCCTATTATCCTGGCGGGCAAATCTTCTTTGGCATCAGATCTCTGGTTTCAGTAGTTGAGATAATCTTCCGGAGATACTGAATATCAAATGCATCTGCCCAGTATAAACTGAACGTGATGTTTAATTTTCAGGACTTGTTAAATGGTGATGGTAGAAAAGAGAATTATGAACAGAATCTTGAGTGTAGTTCCTTTTTCCTTCCACGAGTGGCCTTTGAACTTTTCTCCAGTGTTAAATCCAGCATATTCCAAACACTTGGTGGAACTTCCATTTCAGGAGCATTTTCCTCATTGCAATCTCTATTGACCCAAACAGACTCTATTTATGTTCGTGTGTTTGAAGAAAGAATGGATCTCATGCGAGCAGTAATTGTTGGTGCATCTGGAACTCCGTATCATGACGGGTTGTTCTTCTTTGATATATGTTTCCCTCCAGAGTATCCTAACGAACCACCAGTAAGCTTTTAAGTGTAGTTTGCAGTGCTTGTATTTTTTTTTTACAGCACCATTGTTTATAAGGCCCTTCACTTATGTTCAAGATCTCTAGATAAAAGCTCCAACTCTGAACAAACTCTAATGTTATCAATGTGATCTTTGAATGCAGATGGTGCACTACAATTCTGGCGGGCTCCGCTTAAATCCTAATTTATATGAATCAGGGGAAATCT



gi|13373791|gb|BG454997.1|BG454997 NF112E08LF1F1056 Developing leaf Medicago truncatula cDNA clone NF112E08LF 5', mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| |||||| .
ACGGTTTCCTCTAAACGGGCT

EST sequence (targeted fragment marked with yellow):
AATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGNGTTGATTCTTAACATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCT



gi|260525529|gb|GT140839.1|GT140839 METBL11TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||| || |
ACGGTTTCCTCTAAACAGGTC

EST sequence (targeted fragment marked with yellow):
TCCTTCTTCAAATATTTACCCTTAACAAATTCTTGGTAGTTTTTTTTTTTAAGCTAACAGCAAATGATGGAGTTTCTTTGGTGCATACCTTTACTAGCTTATGCTGGTCCAACCATTTCAGAGGTTCAATAGAAATGATGTGGTTATTGAAGCCCTTTTGCCTACTTGCTGTGAATCAAGAAGCAGAATATATTTCTGTTGAATGGCTAAGAATTCCTGATTAAATATTAGCCATTCTCCCTTGGCACCAAGTAGACCTGATAGAGTTTTAGGCTTTGTAGTGTGGGCAAATTTCCTTTGGCAATCTCGGAAAAGGAAAATTTCATTCCTTTTTGCTATTCATGTATGTTTTAAGATTCCTGTGTACTGGACAAATCTCCTTTGGCAAAAGTTACTGAATTTCCTTTGGTTGGATTCAGGTAGTAAAAGTATATGAGAAACATTTTTTCCTTATGTTATAAAATATTATCATTCAGAAGTAACTATTGGAACTCCACCTATTCTGGAGGCAAATCTCCTTTGGCATCTTTTAATTATCTTCAACTGCTTCATCTAACACTAGAAATTTTCCTTCCATCAAGCTACCCCGTGAAACCGAGAAAAAAAAAAAAAAAAAAAAA



gi|57563941|gb|CX538356.1|CX538356 s13dNF80D11GS090_459964 Germinating Seed Medicago truncatula cDNA, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||| ||.|
ACGGTTTCCTCT-AACNGGGC

EST sequence (targeted fragment marked with yellow):
GCTTAAACTCCATTTTCACATTAGAGTGAACAAAAAAAAACAAGTGTCTCTGAAATGGTTTCCAAGTTCAATGGTGGCGTTGACGATGGTGGAACTGGGCGTGGAACCAAGCCTATCTGAATTAACAACACAACCCATCTTTTGAAACTGTAAAAAGATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATATTTTGCTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCTTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCAGACTTTCTTCTGTCAGAAAGTATATGTTTGATCTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAACTTTGTTGATTCTGGATATCAATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCATTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTAGTATCTGGAAATTACTTATGTTTGAAGATTCACCTGTATCGGGNCAATCTCCTTTGGCAAAAGTTACTTA



gi|20281110|gb|BQ144051.1|BQ144051 NF028G06DT1F1049 Drought Medicago truncatula cDNA clone NF028G06DT 5', mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| |||||| .
ACGGTTTCCTCTAAACGGGTT

EST sequence (targeted fragment marked with yellow):
TGATACGCCAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGAATTCGGAGTCATAATAGACTCCAGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGAGGGGGGGCCCGGTACCCATTCGCCCTATAGTGAGTCGTATTACCAATTCACTGGGCCGTCGGTTTACAACGTCGGGACTGGGAAAACCCTTGGCGTTACCCAACCTAATCGGCCTTGCAGCACATTCCCCCTTTCCCAGCCTGGGGTAAATAAGGAGAAAGAGGCCCGCCCCGATTCCGCCCTTCCAAACCAGGGTGGGCCACCCCTGAAATGGGCGAAATGGGCACACTTGGTACAACCCTTAATACATCTTGTTAAAATTCGCGG



gi|33105142|gb|CF068483.1|CF068483 EST669204 MTUS Medicago truncatula cDNA clone MTUS-8E11, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||| |||.
ACGGTTTCCTCTAAACAGGAT

EST sequence (targeted fragment marked with yellow):
CAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATCCACACTTTCACTAGGACAAATCTCCTTTGGCATCCTTTGATTATCTTAGTCGGTTTCCTCAA



gi|13781151|gb|BG646039.1|BG646039 EST507658 KV3 Medicago truncatula cDNA clone pKV3-48E12 5' end, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| |||||| .
ACGGTTTCCTCTAAACGGGTT

EST sequence (targeted fragment marked with yellow):
TCTCCTTTGGCAATTCGGAGTCATAATAGACCTCCAGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGATGGTTGTGTGCTCCTTGTCAGACCCATCTGGACAGATGGGGGAGGGGGTCGTAAGTGTTGACCGTGTTAGTGGAATTTGGAAAACATTCAAGGGAAATGTATTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGTTCCATTTCGGAAGGTGATTGCGTAATTAACGGTCCGTGGCTTGGTCAGGTTCAAGGGGTGTGG



gi|27410064|gb|CA923134.1|CA923134 EST640852 MTUS Medicago truncatula cDNA clone MTUS-63E1, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|.||||||.||||.| | |||
ATGGTTTCTTCTCGAAGTGAC

EST sequence (targeted fragment marked with yellow):
ATCAGGAAAGCATTCTCGAATTTAGAAAATATGACACTCCTTCGAAACAATGGTTTGAACAATACATCACAACGGCTAGAAAAAGAGAAGAACCAGTACCTAAGGTTAAAACTGTAGATATATATACCCAGCAAAGTATTTGCTACTAAAAGAAAGCTGATATAGACTCTGATAACAATATGTATCCTGCTGTATCTATGACCATACCACAAATAATAATGACAACGATGAATAAATAAAAAGGCTGTAATGTACTTCATATTTCATCATATCTTTTGCTCCGTTAGTTTTTACCACCGTGAAGTATCTTTGTTCTGAAAGATTATGTAAAATCACCTTCTCCACTGAGGTTGAGTCATCTTATCAGTCCCGTCCCTTGAAGATGACAAAGATTTATCAGTCCTCGCAACTCCTCTTCCGCTCAAAGTTATCAGCTTTTCTACTCTTGGGGAAAATGAACCTGACTTGCTGTTAAGTGAAGATGAAAGTGAATGCCTCCTGGTAAAACTGTTTTTGTCTATGATATCAGTAGCAAATCTTGGGGAGCCTTGTCCCCTTAGTCTAGCTTTTGCTGATTCAGTTGGAGCCATATAACTCGGCACTCTTGGACTTGGAGTGTTGTGTATCTCATTTTCTTGATCATTAAAATTAGCAGGCAGTGAAGCTCTTCTTTGGTAATTGTTGCTGATAATTTTGTCACCACCATTCAAGTCTTCGCTAACTCCTATTTCTTCATCTCCTACCTTCTTCATACTAGTCTGTAAGACAGCGTTAGGATCATTATGA



gi|13783492|gb|BG648380.1|BG648380 EST509999 HOGA Medicago truncatula cDNA clone pHOGA-19J15 5' end, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| |||||| .
ACGGTTTCCTCTAAACGGGTT

EST sequence (targeted fragment marked with yellow):
ATAATAGACTCCGTTATCCCTGTCCTGTTGGGCAAATCTCCTTTGGCATTTAATTTTTCAGTTTCAGTGGTGAAGGTATTCTTTCTTTTCAAGAAACTGGCTTTGTATCTGTGACAAGCATAGGTATCAATCAGACACATTTTGTATTATATACAGAATATCCTCTGAAGTTGGTATCGACTCATCCGTTGTTGATTGCAATACATACGGACTCTGGTGTTTAATGTTTCTACTAGCTTGGAAAGGCATATAGTTGATGGAAGCTCAGATGACTGATTCAGACTGGGAGTCTTCCAGTGAGAGCAGCGGCAGTGACGATCAAGAGGATATTGATTTTCTCTATGGTGGCCAAGCTCAGAGCATATTATCAAGTTTAGAGGAAAGCATCGGTAGGATAAATGATTTCCTCTCATTCGAGAGAACATTTGCATACGGCGATGTTGTGTGCTCCTTGTCAGACCCATCTGGACAGATGGGGAGGGTCGTAAGTGTTGACGTGTTAGTGGATTTGGAAAACATTCAAGGAAATGTATTAAAAAATGTGAACTCCAAGAAACTTCTGAAGATTCGTTCCATTTCGGAAGGTGATTGCGTAATTAACGGTCCGTGGCTTGGTCAGGTTCAAAGGGTGGTGGACAGATTAAGTGTATTGTTTGATGACGGGACTAAGTACGAGATCACTACCTTGGAAAATGATAAGATTTTAGCACAAAATCCTAATTTTCTTGAAGATTTGCAGTATCCATACTATCCAGGGCAGAGAGTGAAGGTTAAGTTCTCGACCGCTTCTAAATCAGCTAGATGGCT



gi|33105142|gb|CF068483.1|CF068483 EST669204 MTUS Medicago truncatula cDNA clone MTUS-8E11, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||||||..
ACGGTTTCCTCTAAACGGGGT

EST sequence (targeted fragment marked with yellow):
CAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATCCACACTTTCACTAGGACAAATCTCCTTTGGCATCCTTTGATTATCTTAGTCGGTTTCCTCAA



gi|260525529|gb|GT140839.1|GT140839 METBL11TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||||| .
ACGGTTTCCTCTAAACGGAGG

EST sequence (targeted fragment marked with yellow):
TCCTTCTTCAAATATTTACCCTTAACAAATTCTTGGTAGTTTTTTTTTTTAAGCTAACAGCAAATGATGGAGTTTCTTTGGTGCATACCTTTACTAGCTTATGCTGGTCCAACCATTTCAGAGGTTCAATAGAAATGATGTGGTTATTGAAGCCCTTTTGCCTACTTGCTGTGAATCAAGAAGCAGAATATATTTCTGTTGAATGGCTAAGAATTCCTGATTAAATATTAGCCATTCTCCCTTGGCACCAAGTAGACCTGATAGAGTTTTAGGCTTTGTAGTGTGGGCAAATTTCCTTTGGCAATCTCGGAAAAGGAAAATTTCATTCCTTTTTGCTATTCATGTATGTTTTAAGATTCCTGTGTACTGGACAAATCTCCTTTGGCAAAAGTTACTGAATTTCCTTTGGTTGGATTCAGGTAGTAAAAGTATATGAGAAACATTTTTTCCTTATGTTATAAAATATTATCATTCAGAAGTAACTATTGGAACTCCACCTATTCTGGAGGCAAATCTCCTTTGGCATCTTTTAATTATCTTCAACTGCTTCATCTAACACTAGAAATTTTCCTTCCATCAAGCTACCCCGTGAAACCGAGAAAAAAAAAAAAAAAAAAAAA



gi|13779528|gb|BG644416.1|BG644416 EST506035 KV3 Medicago truncatula cDNA clone pKV3-37A6 5' end, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||||| .
ACGGTTTCCTCTATACGGGTT

EST sequence (targeted fragment marked with yellow):
AAAACAGAAAAATATCTCATAATTTTAGCTACTAGCTGGTTTATATTTGTTGTTTGAAGTGTTTCGTTCTGTGAAATATTTCATTCGCAATTGGGCATATCTCCTTTGGCACTTTGGAGTCCTTGATTGATTCCTATTATCCTGGCGGGCAAATCTTCTTTGGCATCAGATCTCTGGTTTCAGTAGTTGAGATAATCTTCCGGAGATACTGAATATCAAATGCATCTGCCCAGTATAAACTGAACGTGATGTTTAATTTTCAGGACTTGTTAAATGGTGATGGTAGAAAAGAGAATTATGAACAGAATCTTGAGTGTAGTTCCTTTTTCCTTCCACGAGTGGCCTTTGAACTTTTCTCCAGTGTTAAATCCAGCATATTCCAAACACTTGGTGGAACTTCCATTTCAGGAGCATTTTCCTCATTGCAATCTCTATTGACCCAAACAGACTCTATTTATGTTCGTGTGTTTGAAGAAAGAATGGATCTCATGCGAGCAGTAATTGTTGGTGCATCTGGAACTCCGTATCATGACGGGTTGTTCTTCTTTGATATATGTTTCCCTCCAGAGTATCCTAACGAACCACCAGTAAGCTTTTAAGTGTAGTTTGCAGTGCTTGTATTTTTTTTTTACAGCACCATTGTTTATAAGGCCCTTCACTTATGTTCAAGATCTCTAGATAAAAGCTCCAACTCTGAACAAACTCTAATGTTATCAATGTGATCTTTGAATGCAGATGGTGCACTACAATTCTGGCGGGCTCCGCTTAAATCCTAATTTATATGAATCAGGGGAAATCT



gi|27811035|gb|CB065457.1|CB065457 EST645138 HOGA Medicago truncatula cDNA clone HOGA-19E23, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| ||| |||.
ACGGTTTCCTCTAAACAGGAT

EST sequence (targeted fragment marked with yellow):
GAGAGAAAAAAAAAGTGTCTCTAAATATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATTCCACACTTTCACTAGGACAAATCTCCTTTGGCATCTTTTGATTATCTTAGTCGGTTTCCTCAACCT



gi|7566618|gb|AW691882.1|AW691882 NF045B07ST1F1000 Developing stem Medicago truncatula cDNA clone NF045B07ST 5', mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| |||||| .
ACGGTTTCCTCTAAACGGGCT

EST sequence (targeted fragment marked with yellow):
CTTCACAAACAGAGAGAGAGAGAGAAAAAAAAAGTGTCTCTAAAATGGTTCCAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTTGAAGATTCAAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGGTGTT



gi|57563941|gb|CX538356.1|CX538356 s13dNF80D11GS090_459964 Germinating Seed Medicago truncatula cDNA, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
||||||| |||| ||||||..
ACGGTTTACTCTAAACGGGGT

EST sequence (targeted fragment marked with yellow):
GCTTAAACTCCATTTTCACATTAGAGTGAACAAAAAAAAACAAGTGTCTCTGAAATGGTTTCCAAGTTCAATGGTGGCGTTGACGATGGTGGAACTGGGCGTGGAACCAAGCCTATCTGAATTAACAACACAACCCATCTTTTGAAACTGTAAAAAGATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATATTTTGCTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCTTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCAGACTTTCTTCTGTCAGAAAGTATATGTTTGATCTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAACTTTGTTGATTCTGGATATCAATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCATTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTAGTATCTGGAAATTACTTATGTTTGAAGATTCACCTGTATCGGGNCAATCTCCTTTGGCAAAAGTTACTTA



gi|33105142|gb|CF068483.1|CF068483 EST669204 MTUS Medicago truncatula cDNA clone MTUS-8E11, mRNA sequence

TGCCAAAGGAGAGTTGCCCTG
|||||||||||| |||||| .
ACGGTTTCCTCTAAACGGGCT

EST sequence (targeted fragment marked with yellow):
CAAAGTTCAGTGGTGGCGTTGATGATGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAATTAACAACACAACCCACCTTTTCAAACTGTAAAAAAAATCAAATTTTTAGTTTCAACTTGTTATGTTATGTTCATTTTTCGAGTGTTTAAAATCATGGGCTATCTTGGTTTCTTAGCTTGGCTCTATAAACTCTAATTCTAGCTTTTATGGGACCAACCTTCGTGGTGGTCCAAATGGTTCAAAAGAAATGATCTGGTATTAAAAGCTCTTTCGACTTTTGGCAATTGCAGTCGTGTTTTGAATCGGACTTTGTTCTGTCAGAAAGTATATGTTTGATTTGTTTTCTGATGATATTCTTGATTTCAACTTCAAAATTTTGTTGATTCTGGATATCGATCAATCTCCCTTAATACCAGATAGATCTGGTAGAGTGTTTAGCTTCACCGTGGGGCAAATCTCCTTTGGCAATATAGTTTCTGAGTCTCAATCTTGGAAGAGGCAAATTTGTTAACTACTATCTGGAAATTACTTATGTTTGAAGATTCAGCTGTATCGGGCAAATCTCCTTTGGCAAAAGTTACTTAATTTTCTTTGTGTTGATTCTTAGCATATCAAAATAGTAGTTTTCATCTTCTATGAAAGTATCACCTTTCTAAAGTTATCCACACTTTCACTAGGACAAATCTCCTTTGGCATCCTTTGATTATCTTAGTCGGTTTCCTCAA