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mature miRNA: TGGAGAAGCAGGGCACATGCT
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|11915228|gb|BF650098.1|BF650098 NF087H02EC1F1026 Elicited cell culture Medicago truncatula cDNA clone NF087H02EC 5', mRNA seq 

TGGAGAAGCAGGGCACATGCT
|||||||||||||||| ||||
ACCTCTTCGTCCCGTGAACGA

EST sequence (targeted fragment marked with yellow):
GTATTTCTACACACAAAGAGATCGTAAATATGCAACAGGACTACGAACAAATCGTGCAACTGCATCAGGTTATTGGAAAGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGACCAAGCTCAATTCCATACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATGTTTTCTCAAAACCAAACCAACCCAATCTACAACAATATAACAACCAATATGGAACCAAAATTACCTCTAGCCAACAATAACAATGCAAGTACATTTGGAGGAGCACCCTTATAGCTTANACCCTTTATCAT


gi|83667284|gb|DW017692.1|DW017692 EST1226653 MTY Medicago truncatula cDNA clone MTYAW81, mRNA sequence 

TGGAGAAGCAGGGCACATGCT
|||||||||||||||| ||||
ACCTCTTCGTCCCGTGAACGA

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGATAATTATTTCCATCTTTAAAAAATTCTCACTTGTGAAGTTTGAACCTGTTTCTTAATTTCTCTTCTATATCTTTTGTTAGAAAAGAAAAAATGAGCAACATAAGCATGGTTGAGGCAAAGCTACCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTGACACATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAGCAGCATGTGTGGGGGGGAAAGAGTGGTATTTCTACACACAAAGAGATCGTAAATATGCAACAGGACTACGAACAAATCGTGCAACTGCATCAGGTTATTGGAAAGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATCTTACATAAGTTTTGACAAGCTCAATTCCATACAGATGATATGAGCAAGTGCCCTGCTTCTCCATGTTTCCTCAAACCAAACCAACCCATCTACACATATAC


gi|20280905|gb|BQ143846.1|BQ143846 NF005F09DT1F1076 Drought Medicago truncatula cDNA clone NF005F09DT 5', mRNA sequence 

TGGAGAAGCAGGGCACATGCT
||.||||.||||.||||||
ACTTCTTTGTCCTGTGTACTT

EST sequence (targeted fragment marked with yellow):
TTATATCATTTTAATCATAAATTAATATTATTCGGCCGCCCCGATTATTTTTGTTTAACTGAATGCACCAAACTACGAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTGAACAGCTAAATTTTTTCACATACACCACAACATTCAAAATTAGAATGTCTAATAAATTTCAGTAAGAGCAAGTGGGCAATACGGCGGGCGGTCAATTCTTTTGGCCAATTTGTTCCTATATACTTTCCTTCCATCCACCTTTCTTCTTCTTTTTTGTAATTTTTTTAAATTACTTTCCTAATTATGTTTTTTGGTTGGTCGCGAGTTTTTTCAATGCGGAGAGTTTTCCCCCCCCCCCCTCCCTTCCCGTCCTTTTTAATGTTTTAATTATCGAAAATTACTAAAAAGGAATAACGAAATATACCCGTCCTGTACAATAAGCGTCCTCATGTCTGTCCGAGTTCGCGTTTCGCTACTTCCGATATCACATTCGCATAATGCCATATCACTTTCTCATTCCCGAATCCCCATTTCATGTGTCCTGTTTCTTCACTATCCAACTTCCATTCCCCAATCGCATATTCCGTTTCACACTGACATTATCCCTCTTCCCACTTCCCCGACTCCGCCGAGATCCCACTTTGTGTCTTTAGATACTTATTTCTCTCTTCATATACTTATGTGTCGTAGTTACATCACTCTCCCGTTCCCACGAGAGTATATAATATATGTATTAAAAACAGATGTGTCTACGGATGTGAGAGTGCGTCGCGCTACGACACTAAAGAGTCACACAGTAGTACATCTTAGCGTATATTATACGACAAGATGAGATTTATATTAGTAGTGATATTGTGTGATAGTTCGTCGATGTCTCTACTATTCGAACAAGTAGCGCGTAGTAAGAGATATGCAGACTATACAGTATAAAGTGACTACAATATGTCAGCATGTAAAATAGATCGTGAGCGCAATCACGACTATAATATGACATATATACACATACATCATATCTCTCCATTATATCTCTATTCAGACTGTCCTATCGCCTATGCGCAGTGTCAGACTACTGTAGCTTATTTCACCTTGACT