miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGGAGAAGCAGGGCACGTGCA
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|83668481|gb|DW018889.1|DW018889 EST1227850 MTY Medicago truncatula cDNA clone MTYBC15, mRNA sequence

TGGAGAAGCAGGGCACGTGCA
||.||||||||.||| | |||
ACTTCTTCGTCTCGTCCTCGT

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGGCAGTGATGATTGATGGAAGGATGGTTGTGTGGCGAGGTGTATTGACGCAGCCACCACTATCCTTCTGTCTCTTTCTTTCTGAGTCTCCTTTTTTGTTGCCATTGCATTGCAAGTTTGTGATTTTGAGTAGGTGAGGCTTTGATGAATGAGTTAGTTTCTCACTCTCATTGCCAATGATCCATCGTTTCTATTTCTCTCTCTCTACTCTACACACACACACACACCACCACCACCACCACCAACAACAACAACAACAGCAAAAGTGCGCTCGCTTTCTCTTTCTACTTCTTCTTCAACATCCTCGTCGTTGTTCGAACTCAACGCGACCTTTTTTTTCTCTCTTCTTCTTTTTGATATTACGAGGCTGTGATGATCCATGTTTCAGATCAGGCATTCTGAGTGTGAAGAACAACGCAGCTGTGTTATGGCGAGGCGACTCTGTCTGTTGCAGTCATGCTCCTGCTCTGCTTCTTCACTCTCTTCTCTAACAAACAATACACTTCTATCTGAGCCTCCTATTCTTCTTCTACACCCCCACACTCTTAGTCTCTCCGGAGTGAGAGGCTGAGATAGATTAGGGTTCAGTCTGTCTTTTTCACCTCAGCTCCTACTTTTCAGGTGGTGGTACAAGCAAAACACAAGATGTCAATATCTATACATGCTTAACAAATTTGATATTGATTTTGTTGAAGAAATGAGTGCTTTCGTTTGTAG



gi|14982448|gb|BI308121.1|BI308121 EST529531 GPOD Medicago truncatula cDNA clone pGPOD-2M23 5' end, mRNA sequence

TGGAGAAGCAGGGCACGTGCA
||||||||||||.|||||. |
ACCTCTTCGTCCTGTGCAT-T

EST sequence (targeted fragment marked with yellow):
CTTTTATATATAATTCTTCTCTGTTTCATCACTAAAACCTTTGATTTGAGGTTTTGAACAAGGTTTTAGAGGTTGACCCTTTTGGTTACCTTGATCAAGATGGAAAACGTTTCAGTCTTATCAAATAAGGAAGATGAGAAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTCTACAAAAAGGTTATTGATTCAAATTTCTCTGCAAGAGCCATTGGTGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATTTAAAGCAAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATATCCAACTGGGTTGAGGACAAACAGAGCAACAGAAGCAGGTTATTGGAAAGCAACTGGGAAAGATAAAGAAATTTTCAAAGGGAAATCGTTGGTTGGTATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCACAATCTTCCAAAAGCTGCAAAGAATGAATGGGTGATTTGTAGGGTTTTTCAGAAGAGTTCAGCTGGGAAAAAAACACATATTTCTGGTATAATGAGGTTGGATTCACTTGGTAATGAATTTGGTTGTTCTGTTTTACCACCACTTACTGATTCGTCGAATTCAATTGGGAAAATCAAACAATTGAATGATTCAGCTTACGTGTCCTGCTTCTCCAACTCAATTGATGTTCAAAGAAACCAAGGAGGGGATCTTGATTCATTCAACAACTCAATTTATGGTATTTCTTCACATAATCAA



gi|20280905|gb|BQ143846.1|BQ143846 NF005F09DT1F1076 Drought Medicago truncatula cDNA clone NF005F09DT 5', mRNA sequence

TGGAGAAGCAGGGCACGTGCA
||.||||.||||.|||.|| |
ACTTCTTTGTCCTGTGTACTT

EST sequence (targeted fragment marked with yellow):
TTATATCATTTTAATCATAAATTAATATTATTCGGCCGCCCCGATTATTTTTGTTTAACTGAATGCACCAAACTACGAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTGAACAGCTAAATTTTTTCACATACACCACAACATTCAAAATTAGAATGTCTAATAAATTTCAGTAAGAGCAAGTGGGCAATACGGCGGGCGGTCAATTCTTTTGGCCAATTTGTTCCTATATACTTTCCTTCCATCCACCTTTCTTCTTCTTTTTTGTAATTTTTTTAAATTACTTTCCTAATTATGTTTTTTGGTTGGTCGCGAGTTTTTTCAATGCGGAGAGTTTTCCCCCCCCCCCCTCCCTTCCCGTCCTTTTTAATGTTTTAATTATCGAAAATTACTAAAAAGGAATAACGAAATATACCCGTCCTGTACAATAAGCGTCCTCATGTCTGTCCGAGTTCGCGTTTCGCTACTTCCGATATCACATTCGCATAATGCCATATCACTTTCTCATTCCCGAATCCCCATTTCATGTGTCCTGTTTCTTCACTATCCAACTTCCATTCCCCAATCGCATATTCCGTTTCACACTGACATTATCCCTCTTCCCACTTCCCCGACTCCGCCGAGATCCCACTTTGTGTCTTTAGATACTTATTTCTCTCTTCATATACTTATGTGTCGTAGTTACATCACTCTCCCGTTCCCACGAGAGTATATAATATATGTATTAAAAACAGATGTGTCTACGGATGTGAGAGTGCGTCGCGCTACGACACTAAAGAGTCACACAGTAGTACATCTTAGCGTATATTATACGACAAGATGAGATTTATATTAGTAGTGATATTGTGTGATAGTTCGTCGATGTCTCTACTATTCGAACAAGTAGCGCGTAGTAAGAGATATGCAGACTATACAGTATAAAGTGACTACAATATGTCAGCATGTAAAATAGATCGTGAGCGCAATCACGACTATAATATGACATATATACACATACATCATATCTCTCCATTATATCTCTATTCAGACTGTCCTATCGCCTATGCGCAGTGTCAGACTACTGTAGCTTATTTCACCTTGACT



gi|11915228|gb|BF650098.1|BF650098 NF087H02EC1F1026 Elicited cell culture Medicago truncatula cDNA clone NF087H02EC 5', mRNA seq

TGGAGAAGCAGGGCACGTGCA
|||||||||||||||| |||
ACCTCTTCGTCCCGTGAACGA

EST sequence (targeted fragment marked with yellow):
GTATTTCTACACACAAAGAGATCGTAAATATGCAACAGGACTACGAACAAATCGTGCAACTGCATCAGGTTATTGGAAAGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGACCAAGCTCAATTCCATACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATGTTTTCTCAAAACCAAACCAACCCAATCTACAACAATATAACAACCAATATGGAACCAAAATTACCTCTAGCCAACAATAACAATGCAAGTACATTTGGAGGAGCACCCTTATAGCTTANACCCTTTATCAT



gi|83667284|gb|DW017692.1|DW017692 EST1226653 MTY Medicago truncatula cDNA clone MTYAW81, mRNA sequence

TGGAGAAGCAGGGCACGTGCA
|||||||||||||||| |||
ACCTCTTCGTCCCGTGAACGA

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGATAATTATTTCCATCTTTAAAAAATTCTCACTTGTGAAGTTTGAACCTGTTTCTTAATTTCTCTTCTATATCTTTTGTTAGAAAAGAAAAAATGAGCAACATAAGCATGGTTGAGGCAAAGCTACCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTGACACATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAGCAGCATGTGTGGGGGGGAAAGAGTGGTATTTCTACACACAAAGAGATCGTAAATATGCAACAGGACTACGAACAAATCGTGCAACTGCATCAGGTTATTGGAAAGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATCTTACATAAGTTTTGACAAGCTCAATTCCATACAGATGATATGAGCAAGTGCCCTGCTTCTCCATGTTTCCTCAAACCAAACCAACCCATCTACACATATAC