mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|83668481|gb|DW018889.1|DW018889 EST1227850 MTY Medicago truncatula cDNA clone MTYBC15, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGGCAGTGATGATTGATGGAAGGATGGTTGTGTGGCGAGGTGTATTGACGCAGCCACCACTATCCTTCTGTCTCTTTCTTTCTGAGTCTCCTTTTTTGTTGCCATTGCATTGCAAGTTTGTGATTTTGAGTAGGTGAGGCTTTGATGAATGAGTTAGTTTCTCACTCTCATTGCCAATGATCCATCGTTTCTATTTCTCTCTCTCTACTCTACACACACACACACACCACCACCACCACCACCAACAACAACAACAACAGCAAAAGTGCGCTCGCTTTCTCTTTCTACTTCTTCTTCAACATCCTCGTCGTTGTTCGAACTCAACGCGACCTTTTTTTTCTCTCTTCTTCTTTTTGATATTACGAGGCTGTGATGATCCATGTTTCAGATCAGGCATTCTGAGTGTGAAGAACAACGCAGCTGTGTTATGGCGAGGCGACTCTGTCTGTTGCAGTCATGCTCCTGCTCTGCTTCTTCACTCTCTTCTCTAACAAACAATACACTTCTATCTGAGCCTCCTATTCTTCTTCTACACCCCCACACTCTTAGTCTCTCCGGAGTGAGAGGCTGAGATAGATTAGGGTTCAGTCTGTCTTTTTCACCTCAGCTCCTACTTTTCAGGTGGTGGTACAAGCAAAACACAAGATGTCAATATCTATACATGCTTAACAAATTTGATATTGATTTTGTTGAAGAAATGAGTGCTTTCGTTTGTAG | |||||||||
gi|14982448|gb|BI308121.1|BI308121 EST529531 GPOD Medicago truncatula cDNA clone pGPOD-2M23 5' end, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CTTTTATATATAATTCTTCTCTGTTTCATCACTAAAACCTTTGATTTGAGGTTTTGAACAAGGTTTTAGAGGTTGACCCTTTTGGTTACCTTGATCAAGATGGAAAACGTTTCAGTCTTATCAAATAAGGAAGATGAGAAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTCTACAAAAAGGTTATTGATTCAAATTTCTCTGCAAGAGCCATTGGTGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATTTAAAGCAAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATATCCAACTGGGTTGAGGACAAACAGAGCAACAGAAGCAGGTTATTGGAAAGCAACTGGGAAAGATAAAGAAATTTTCAAAGGGAAATCGTTGGTTGGTATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCACAATCTTCCAAAAGCTGCAAAGAATGAATGGGTGATTTGTAGGGTTTTTCAGAAGAGTTCAGCTGGGAAAAAAACACATATTTCTGGTATAATGAGGTTGGATTCACTTGGTAATGAATTTGGTTGTTCTGTTTTACCACCACTTACTGATTCGTCGAATTCAATTGGGAAAATCAAACAATTGAATGATTCAGCTTACGTGTCCTGCTTCTCCAACTCAATTGATGTTCAAAGAAACCAAGGAGGGGATCTTGATTCATTCAACAACTCAATTTATGGTATTTCTTCACATAATCAA | |||||||||
gi|20280905|gb|BQ143846.1|BQ143846 NF005F09DT1F1076 Drought Medicago truncatula cDNA clone NF005F09DT 5', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TTATATCATTTTAATCATAAATTAATATTATTCGGCCGCCCCGATTATTTTTGTTTAACTGAATGCACCAAACTACGAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTGAACAGCTAAATTTTTTCACATACACCACAACATTCAAAATTAGAATGTCTAATAAATTTCAGTAAGAGCAAGTGGGCAATACGGCGGGCGGTCAATTCTTTTGGCCAATTTGTTCCTATATACTTTCCTTCCATCCACCTTTCTTCTTCTTTTTTGTAATTTTTTTAAATTACTTTCCTAATTATGTTTTTTGGTTGGTCGCGAGTTTTTTCAATGCGGAGAGTTTTCCCCCCCCCCCCTCCCTTCCCGTCCTTTTTAATGTTTTAATTATCGAAAATTACTAAAAAGGAATAACGAAATATACCCGTCCTGTACAATAAGCGTCCTCATGTCTGTCCGAGTTCGCGTTTCGCTACTTCCGATATCACATTCGCATAATGCCATATCACTTTCTCATTCCCGAATCCCCATTTCATGTGTCCTGTTTCTTCACTATCCAACTTCCATTCCCCAATCGCATATTCCGTTTCACACTGACATTATCCCTCTTCCCACTTCCCCGACTCCGCCGAGATCCCACTTTGTGTCTTTAGATACTTATTTCTCTCTTCATATACTTATGTGTCGTAGTTACATCACTCTCCCGTTCCCACGAGAGTATATAATATATGTATTAAAAACAGATGTGTCTACGGATGTGAGAGTGCGTCGCGCTACGACACTAAAGAGTCACACAGTAGTACATCTTAGCGTATATTATACGACAAGATGAGATTTATATTAGTAGTGATATTGTGTGATAGTTCGTCGATGTCTCTACTATTCGAACAAGTAGCGCGTAGTAAGAGATATGCAGACTATACAGTATAAAGTGACTACAATATGTCAGCATGTAAAATAGATCGTGAGCGCAATCACGACTATAATATGACATATATACACATACATCATATCTCTCCATTATATCTCTATTCAGACTGTCCTATCGCCTATGCGCAGTGTCAGACTACTGTAGCTTATTTCACCTTGACT | |||||||||
gi|11915228|gb|BF650098.1|BF650098 NF087H02EC1F1026 Elicited cell culture Medicago truncatula cDNA clone NF087H02EC 5', mRNA seq TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GTATTTCTACACACAAAGAGATCGTAAATATGCAACAGGACTACGAACAAATCGTGCAACTGCATCAGGTTATTGGAAAGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGACCAAGCTCAATTCCATACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATGTTTTCTCAAAACCAAACCAACCCAATCTACAACAATATAACAACCAATATGGAACCAAAATTACCTCTAGCCAACAATAACAATGCAAGTACATTTGGAGGAGCACCCTTATAGCTTANACCCTTTATCAT | |||||||||
gi|83667284|gb|DW017692.1|DW017692 EST1226653 MTY Medicago truncatula cDNA clone MTYAW81, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CGGCCGGGGATAATTATTTCCATCTTTAAAAAATTCTCACTTGTGAAGTTTGAACCTGTTTCTTAATTTCTCTTCTATATCTTTTGTTAGAAAAGAAAAAATGAGCAACATAAGCATGGTTGAGGCAAAGCTACCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAACTTGTGTGTGATTACTTGATGAAGAAGGTGACACATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAGCAGCATGTGTGGGGGGGAAAGAGTGGTATTTCTACACACAAAGAGATCGTAAATATGCAACAGGACTACGAACAAATCGTGCAACTGCATCAGGTTATTGGAAAGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATCTTACATAAGTTTTGACAAGCTCAATTCCATACAGATGATATGAGCAAGTGCCCTGCTTCTCCATGTTTCCTCAAACCAAACCAACCCATCTACACATATAC |