| mature miRNA: TGTCTACTCCCTCCGTCCTAA species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|33105904|gb|CF069245.1|CF069245 EST669966 MTUS Medicago truncatula cDNA clone MTUS-18B1, mRNA sequence TGTCTACTCCCTCCGTCCTAA EST sequence (targeted fragment marked with yellow): GCTATGCCGCTCGCCTTGTGAGATTCATCAATTTTGAAAGAACTAAACTTCCTGAAGAAATTCTAAAGCATAATCTGGATGAAAAGAGAAAATATTTTTCAGATGTTCATCTTGAAGTTGAAAGGAGTGATGCCGAGGTTCAGGCGGAGGGAGTATACAACCAAAGGCTTCAGAATCTTGCTGTCACTCTCGATAAGGTAAGGTATGTTATGAGATGTATTTTTGGTGATCCGCGGAAAGCACCACCTCCTCTTGAGAAGCTCAGTCCTGAAGAAGTTGTTTCGTCTCTCTGGAAAGGAGAGGGCTCATTTGTTGAGGAGCTTCTTCAGGGCATAGCTGCTCATGTGGAAGAAGACATCTTGAATGATCTCAAATCAAAAATTCATGCTCGTGATCCTTCAAGTTCGGCAGATATTCTAAAAGAGCTTCGGAAATCTCTATTATGGTTGAGAGATGAGATCCGAAGTCTTTCTTGTACATATAAATGTCGACATGATGCTGCTGCCGACTTGCTCCATATTTATGCTTATACCAAGCACTTCTTTAGAATACAGGAATATCAAACCGTTACGTCACCGCCTGTCCATATTAGTCCACTTGACTTGGGGCCCAAGTATACTAATAAGTTGGGAGCAGAGATTCAGGAGTACCGAAAGGTATATGGTGAAAATTATTGTTTGGGGCAGCTGATTTTTTGGCATAATCAGAGTAATACAGATCCAGATCGTAGCTTGGTTAGAGCAAGCAAGGGGGTGTTTGTCTTTTACAGACATCAATTCCTTTTATGCCAAGGCTCA | |||||||||
gi|148765445|gb|ES612139.1|ES612139 MTGland_A016_2007-05-04/MTGlandA016_D12_045_1 Medicago truncatula A17 glandular trichome Med TGTCTACTCCCTCCGTCCTAA EST sequence (targeted fragment marked with yellow): GATGGGTGGTTGCGGATACTGTGTTTACAGTGTTTGTTTTTGTTAAGGTGGTGATGTGTTATGGGGGTTATCTTCAGGGGCTTTGTCCGGGGGTTATGGTGTACCGTCTATATGTGGCACCATTTGTATCTTGTTTCGTCCATACATTGCGTCTTGCGGGGGGATGACGTTTAATAATATTTGTTGATTAAAAAAAAATTGTAAAACTTTTGAACCCTTAAAAAAATGTAAAACTTCTAAAATTACCCCAAATTTACAACAATACTTCTCTTTTGACACACCCCAGCCTTCATTTTGTACCAAAAAACTCACTCTTGTAATGCCAATTGCCACCTCTTAGTCATTTCACACGTATACAGAATTGTAATTAATTTTGTATATGAAAGAGATATTATGAATTGTTTTACAAAATTGTTCTTGATAAATGGTATAAGAAAGATAAATTAAAGAATTGAAAGAAGATAAAATAATAATTTGTCAAGGGTATAATAGAAAAAATATTATTAATGTTTCATTGGTATTGTAAAACGATTTATAATTTAAGACAATTTTTTCTCAAATGAACTTATAATTTGGGATTGAGGGAGTAGATGGAGCAGTTGTTTGGACATTTCTAGAGTCATGAATTTTGTTGTGGCGATCTCACATCTTTA | |||||||||
gi|148764309|gb|ES611003.1|ES611003 MTGland-A002_2007-02-01_1/MTG-A002_D06_021_1 Medicago truncatula A17 glandular trichome Medi TGTCTACTCCCTCCGTCCTAA EST sequence (targeted fragment marked with yellow): ACGAGTATTATGAGCTGTTGTGAGTTGTGAATGTGTTACATGCACTTGGTATAAATCCGACAAGAATATTCTTGTGCTTGGTAAAAAAAATCGTGCGTTTAATTTCTCTAAGCTGCTCCTAAAAAAAATAAAAATCTACACTTAATTAATATTACCTCCGTCCCTATATATATATATAAGACCTTTTTTTCAAAATCACGGGAATTAAGATAGTAGATATTTGTATTAAAGTTGTTTGTAAACATTATTATTTTACAAATTTATCCTTTATGAGAGAGAATTAGTTTATGTTTTCAACATATTATTTATTATTGATTGAAGAAAAAGATGTATAATAAATAGGGGCATGTATGTAAAGAAATAATTAATGTAGTTGAAAGTAGCAAAAGAGTCTTATGAAAAGGGAAAAGAAGATTCTCAAAAGGTCTTATAATTAAGGACAGAGGTAGTAGACATAAATTTTTTGACAAAAATTAATAAAAAAAGAATATTATTTACCCATCCTTTCTTTGACTTATTTTTTTTGGCTGTTTTCTTTGACTTATTTGTTAAGTTATAAATCACCCTTAAAAAAAAAAAAAAATTAAGTGGTACATCAATTTTGTTTGCCTTTTTGATTTGGTCAAAAATACTCTACAAATTTACTCTTAATTTTGAAAAAATAATTTGTTATTATATTTGTAATCTTTAAATTAAATTTTGAGTTACTCCATAAAAAAACAAAAATCAAGTTA | |||||||||
gi|89246630|gb|DY618417.1|DY618417 AC4782 NOLLY Medicago truncatula cDNA 5', mRNA sequence TGTCTACTCCCTCCGTCCTAA EST sequence (targeted fragment marked with yellow): GTGAATACTTGAAAAGATGGCTGAAGAGGAACAACCAAAGGATCTTAACTATATTCCAGAGGTTATATTGAAGAAGAGGAAACACAGTGAAGCATGGGCCCTGAGTAAAAAGGCGCAACTCCAGAAAAAAAGTTTCCAGCTCAGAAAGTCCAAGGACTTCATAAAAAAGCCCGAGGATTTCATTTTTGAATATCGCAACAGGGAGATTGACCTTATTAGAATGAAACGAAGGGTCAAGTGGAGACGGGGAGATAAATCGAAGCCAAGCAACAAGCCCATAATAGTCATTCGTATTCAAGGGAAACAAGACATGCATGCTACAACCAGAAAGCACTTATTCAGTTTGGGATTGAGAAGAATATTCAGTGCTGTCTTTGTGAAGCCAACTGATGGAGTGATGGCCAAGCTGGCGAGAGTTGAACCATATGTCACCTATGGATATGCAAATCTTAAAACCATAAAGGAGCTGATTTACAAGAAGGGACATGCAAAAATAGATAAGCGAAAAGTTCCTTTGACAGACAATAACCTTATTGAGCAGGAATTGGGAAAGTTTGGTATTGTATGCATTGAAGACATTGTGCATCAAATTGACAATGTTGGTCCTCATTTCAAGGAAGTTGTCCGATTTATGTGGCCCTTTGAACTGAACAAGCCAGCAGATGGATTAAAAGGATTGAAAAACCGATACAAGGATGGTGGAGATTCAGGGACCGTGAGGATCTCATCAATGAGCTCGTCAATAAAATGAATTGATGTAGGTCACAGCCACAATATACTATCAATACAATCATTGTGTTGATGGTTTGTGGTGTCCTCACATGAATTTTGATGTTTTGTCACAAAAATATACTGCCATTTTCTGCTAAAGCTGAGTTGAAATCTGTAATATCTTTGTGCCTTCATTTATTGCTTTTAGCTGTTTTGTTTCCTTTTTATTTGGGTTAGTATGTAGGGAGTTGACAATGATTGGAAGGAGGAAAGGATTGGTCAAATGTATTTGATGTACTTGAAACCATGCTGATTGCTTCCTTTTCAATATCTAAAACCATGTTTAGGTCCTGG | |||||||||
gi|7565293|gb|AW690557.1|AW690557 NF035H05ST1F1000 Developing stem Medicago truncatula cDNA clone NF035H05ST 5', mRNA sequence TGTCTACTCCCTCCGTCCTAA EST sequence (targeted fragment marked with yellow): GAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAGTTAAGGTTATAATAGAAAAAGTAACATTAAAGTTGCATTGGTATTGTAAAGCGACGTACAATTTAGGACAAATTTTTTTCCCTAAAGCGACATACAATTTGGAACGGAGGGAGTAGATAACTTCGTACGCACAAATTTTAATGATGTTATTCGAACAGCTGTTTTCAGTACTCAAACAGTACGACAAAATAAGGAGCCTTCTACTAAAAAATACAAAAAATAAGCAACCTTGTATGCTTCCAGCAATTATGTGATGATTAGTAAGAAGAAAAATGCTACAAAGCAACGCCTAAGTTGTCTCACTTCTTGACCTCTTCATACTCTGCCTCTGGAGCCTGATCACCACCACCTGGAGAACCTCCATCAGAGGAACCTCCACTTGACCCACCTGACATATGCTGACCAATCTTTGACACGGCTTTGTTAGCAGCATCAAGTTTTGTCTTAATTTCATCAACACTTTCTCCTTCCATAGCCGTTCTCAAATCTGAGACCGAGTTTTCAATTTCCTTCGCAACCTCACTAGGAATCTTTTCCCTATACTCCGCTCAAACTCTTTTCAATCAGAGTAGATTGATGTGTCAGCACTATTTCTTGATATC | |||||||||