| mature miRNA: TGTTATTTCATCGATTTTGTTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7204932|gb|AW559506.1|AW559506 EST314554 DSIR Medicago truncatula cDNA clone pDSIR-19F12, mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): TATCCCAATGAGAAAGAGAATCATGTGGTTGAATCTCACACCTTACAAATAGTTTACAATGATACACTCTCTGCTATGGTACTTGGTGCAAATATGGTGTTTCCTGCAGTTCTTAACGCTGCAATTGAACTCCATTTATTTGATATCATTGCTAAGGAAAGTAATGGTGGATTCATGTCATCCTTTGAAATTGCTTCAAAGCTACCAACACAGCATTCTGATTTACCGAATAGGCTTGATCGCATGTTTCGATTGCTTGCAAGCTACTCTCTTCTGTCTGTTTCTTCTCGGACCAATGATGATGGTAGCATAGTGAGAGTTTATGGGATCACACCATCTGGTAAATATTTTGTCAAGTATGAAAATGGTGATAGTTATTTGGGCTCATTCACATCATTTTTGTCTCACCCTGCTTTGTCAATGGTGTGGTTGAATTTTAAGGAAGCAATTATTGATCCAGAGGGTGACCTGTTCAAAAAAGTTCATGGAATAACAATGTTTGAATACTTTAAGAAAGATCCCACAGATAAATGAAATATTTAACAAATCATGACGGATACATGCACAACTC | |||||||||
gi|7561395|gb|AW686659.1|AW686659 NF043G12NR1F1000 Nodulated root Medicago truncatula cDNA clone NF043G12NR 5', mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): GAGACATCATAAACGACGCTGCGTTGGACGACTTTTTCAGTTTCATCCACATTTCGTAAACGACAACAGCGTCACACAAACGGTGCCACTCGGTGCTACCGCACCGTCAAGCTGATTTCTTCCTATCCTAAAACGACATCGTATCGATCAATATCATCGACGATCCTCTTTCATCCCAATTACCAAACCCTAATTCAGAGAAAGTTTTTTTCTCCTTAATTTGAAGGCAAATGGCATCTTCTTCAGACTCATGGTTGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCGTCTGCTATAAGAAGGAAAATCACAATATTGGGGACCCGACTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGCCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTTTGCAACGACAAAGTTTATGAAAGAACAAGATGAG | |||||||||
gi|57498568|gb|CX529849.1|CX529849 s13dNF51G03MJ021_245741 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): GCACGAGGAGTTTTTCCACTTATCATCAGTCACATGGAATAAAAATCATATTATGTCAGAGTTAGTAGTTTTTGTATCAGAGGAACAAAATCGAAAAATGGGTCATTTTGTTTTATGGAGTTTTCAAGCATTACCCACGTTTTTATCAATTCAAGCATCATAGCCTTTGTCATCTACCTCTGCTCCACAAAATCGATGAAAGAACATACCAAAATTGTGCTAGATAGAAAGATATTTCATACTATTTTCATTTTGTTATCCTTTTCTTCAAATATGTTTATGAAGCATTTTGATTTTCTACTTGATTTCCTTCCTTTTTTGTCTATTAATTTTTGTTTCTTAGTGGTAAAACTTAGAAATAACAATCTGAATATGGTTAAGGGTTTTAATCACAATAAATTACAGTTTTTCATAGCGACTTTAATATAGTGCACTATTGTTCAGGTAACAAACCCTAGATACGATGTTTATATATATTCACGTAACTCCTCACTTCATAGCAGCTCATCAACAATGGATGTGCCACTTCTCACCAAGAAGATCATAAAGAAGAGGGTCAAACATTTCAAAAGACCCCAAAGCGATCGCAAGATCTGTGTGAAGGTATAATAGCTTTTCACTTTTTCAATTCTGTTCATTGATTATATTCTTT | |||||||||
gi|14872479|gb|BI267449.1|BI267449 NF110B06IN1F1057 Insect herbivory Medicago truncatula cDNA clone NF110B06IN 5', mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): CACAAATTGAACGTGTCACTCAAATCTTGGGTCGCCGTACCAAAAATAATCCTTGTCTTATTGGGGAACCTGGTGTCGGAAAGACAGCAATTGCTGAAGGTCTTGCTCAACGGATTGCAAATGGTGATGTCCCCGAAACCATAGAGGGAAAGAAGGTTATAACCCTAGATATGGGTCTACTTGTAGCTGGAACTAAATACCGTGGAGAATTTGAAGAAAGATTGAAAAAACTAATGGAGGAAATCAAACAAAGCGATGAAATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCGGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGTATAGGAGCCACAACTCTAGATGAATATAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGGCGATTCCAACCTGTTAAAGTGCCAGAGCCAACTGTTCCTGAAACCATACAAATACTGAAAGGACTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACTGATGAGGCTCTTGTAGCTGCTGCAGAGCTGTCACATCAATATATTAGCGATCGATTTTTGCCTGACAAAGCTATANATTTGATTGATGAAGCTGGTTCCCGAGTNCGACTTCACATGCACAGNT | |||||||||
gi|7676043|gb|AW329736.2|AW329736 N201003e rootphos(-) Medicago truncatula cDNA clone MHRP-23E8, mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): CTCGAGTTTTTTTTTTTTTTTTTTTTTTTATTACAACACAGATACTTTAATTATCACAACTTATTACACTACAATACCGAAACAACAACAACGAAATCGATGAAATAACAAAAGCATACTAGTATAAACCAATAATAACACTTTAAATCATTTCATCTGCGTCTAACAGTAACGGGACTTCGCACAATATGTTTCCCATTTGTCCATCACAGTTCTCCAAATTCGTATTTTCCCTTCGAAGAGTAATGGGACTCCTTACAATGTGTTTTCCATTTGACCATTGCAGTTCTCCAAATTCGTATTTTCCCTGTGGAGTCACACTTGTTGCTTGCACAGTAACTTTAAATGTCTTCTTTTCACCTATTTTCTTGAATTTCAAGGAACTTGGTACAACAACAATTTTATATCCAGGCAATTGGGCTTTTGCAGTATATGTACTTCGGGGCCCAACATTGGTAACTGGACGAGTGACAGTAACAGCATTTAACCCAA | |||||||||
gi|209566148|gb|GE349528.1|GE349528 MEUAD09TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): CTTCATCATCAAGGAGGGATGCACGTACCGGATGAAGGTTAAGTTCCGAGTGCAACATGAGGTTATTTCTGGATTGAAGTACGTGCAACTTGTCAAGAGGTTTAATGTCAGAGTCGACAAAAGTGATGAAATGATGGGAAGTTACCCGCCGAATACCAAGGAGAACCCGTTTTACGAGAAAACCTTCATCGAAGAAGAAGCCCCTAAAAATGTCTTGCTGCGTGGTGAGTACGAAGCCCCCAGCAGGTTCGTGGATGACGACAAAAATGTCCATTTGGAATTCCAATGGGGCTTCGCGATCAAGAACCGCTGGGACTGAGCGTGTTTCTAATTATATTCGTACCTCAACACGTTTAAGTTGGCGTTTCGTCTAGTTAGCTAGCTACTACTTTCTGTCTCTTAATGGGCGTTTATTTTTATGTTTCAATCTTACCTTGAAACCGTTATACCTATTTTTTTTTAAAAATGCATAGGTTCCCTGTTTATTCACTTT | |||||||||
gi|30099092|gb|CB891924.1|CB891924 EST648893 KV3 Medicago truncatula cDNA clone KV3-52H21, mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): GGGGGTGCACGATCTATAGATATCACACTCTCATATACATCAATTATTAGGGTACATATACACTAGTTATTATAATACTCATTACTAAGCACATATACTTATTATAAAACTCATTAGACTACCATACATACCCAAGCAACAACAACATTGATGAAATAACAAAAGCAAACTGGTATAATCTAATAGCCAAACATGCATTTACATATGCATCTACATTTTATTGTCATAACTGAACCAACTCAGAAATAATCTTTCATTTGCGTTGAACAGTAACGGGGCTCCTTACGATGTGTTTTCCATTTGTCCATCTCAATTCTCCAAATTGGTATTTCCTCCTTGGAATCTCACTTGTTGCTTGAACAATAACTTGAAATGTCTTCTTTTCACCTATTTTCTTGAAATTCAAGGAACTTGGTACAACAGCAATTTTATATCCAGGCAATTGAACTTTAGCAAAATATGTACTTGGTGGCCCGACATTGGTAACTGTACGAGTGACAGTAATAGCATTTAATCCAAGATTTGGTAATGTGATTGAAGGGTAATTCAAGTCATCTATACTATGAGTTCCTGAACAAGTAAATGTCATGTTGAAATTAAGTGCTGAAATGAGTTGCTTGTTGTATCCAGAGGCACATAAGAAGTTTAAGTAATCCTTAA | |||||||||
gi|161108047|gb|EY477993.1|EY477993 METB901TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): GTGCTTCAAAGCTACCAACACAGCATTCTGATTTACCGAATAGGCTTGATCGCATGTTTCGATTGCTTGCAAGCTACTCTCTTCTGTCTGTTTCTTCTCGGACCAATGATGATGGTAGCATAGTGAGAGTTTATGGGATCACACCATCTGGTAAATATTTTGTCAAGTATGAAAATGGTGATAGTTATTTGGGCTCATTCACATCATTTTTGTCTCACCCTGCTTTGTCAATGGTGTGGTTGAATTTTAAGGAAGCAATTATTGATCCAGAGGGTGACCTGTTCAAAAAAGTTCATGGAATAACAATGTTTGAATACTTTAAGAAAGATCCACAGATAAATGAAATATTTAACAAATCAATGACGGATACATGCACAACTCACATGAAAAGAATCCTTGAAATATACCAAGGATTTGAGGGAATATCAACACTGGTTGATGTAGGTGGTGGAACAGGGCAAAGTCTCAAAATGATTATCTCTAAATACCCATCAATAAAGGCAATCAATTTTGACCTTCCACAAGTAATTGAAAATACACCACCTTTTCCAGGCATTGAATATGTTGGAGGAAATATGTTTGAAAGTGTTCCACAAGGAGATGTCATAATGATTAAGGCTGTCAGCCATAACTGGTCAGATGAAAAGTGCATAAAAATGTTTACCAATTGTTACAAAGCTTTGCCACCAAATGGAAAACTCATTCTCATAGAACCCTTGCAACCAGAAGATCAAGAACCAACAAATGTATCTAGATGGCTTTCAATTGCTGATGACATGATGTTTGTCACAGCTGGTGGAATGGAAAGAAGTGCGAAGATATGAGACTTTGGGAAACGATCTGGATTT | |||||||||
gi|7205671|gb|AW560245.1|AW560245 EST315293 DSIR Medicago truncatula cDNA clone pDSIR-26F11, mRNA sequence TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): ATTCTTACAACATTTCCTTTACCCTTCACGGTACTGACAAAATGTGATACATTACAAGAACACATTTACATTGATCGTGTATAAAATTTGATATCATCTTTTACTAGGATTTGAGTATTAAATGGAGCCATCAAAATGTGGCACATTTTATGGTTCTGCACAACATGTAGTTGTCACAGGACTCCCATTTATCAATTATTACAACACAGATACTTTAACTATCACAACTTATTACACTACAATACCGAAACAACAACAATGAAATCGATGAAATAACAAAAGCATACTAGTATAAACCAATAATAACACTTTAAATCATTTCATCTGCGTCTAACAGTAACGGGACTTCACACAATGTTTCCCATTTGTCCATCACAGTTCTCCAAATTCGTATTTTCCCTTCGAAGAGTAATGGGACTCCTTACAAAGTGTTTTCCATTTGACCATTGCAGTTCTCCAAATTCGTATTTTCCCTGTGGAGTCACACTTGTTGCTTGCACAGTAACTTTAAATGTCTTCTTTTCACCTATTTTCTTGAATTTCAAGGAACTTGGTACAACAACAATTTTATATCCAGGCAATTGGGCTTTTGCAGTATATGTACTTCGTGG | |||||||||
gi|14880052|gb|BI271479.1|BI271479 NF053E08FL1F1067 Developing flower Medicago truncatula cDNA clone NF053E08FL 5', mRNA sequenc TGTTATTTCATCGATTTTGTTG EST sequence (targeted fragment marked with yellow): GGACTTAAAAAAATAGATGAAATAACAAGATTCTTCAACAAAAAAATAACTAATCCTTGTGTGATGTGGATCGTTAACCTGGTTGGGAGGACACGACACGATTCTTAGCTTCACCGAGTTGTATTGTACCTCCGATCCTCATAGGTTTCTTTCTTCTGTTCCTCTCCGTGCTGCGCACAATCTCCGCATAGCTGCTATCGTGCGCAGTTTTCGTCGATTGATTTATTGAGAGCTAAGATACAATACAAGTACTGAAAAATCACCAATTTAGAGAAGGAGTATGGCTGATATATTCGCATGGCTCTTCTCCTTCTTCACCCTCATTGCCTTAATTGTAATTATTATTTATCAGTTAATGTGCTTGGCAGACCTTGAATTTGATTATATAAATCCTTATGATTCTGCATCTCGAATAAACAAAATGGTTTTGCCTGAGTATATCACAGTAGCTGCCCTGTGCGGTTTCTACCTTGTAACAGGACATTGGGTTATGGCACTGTTGTGTGCTCCTTACCTCTACTACAATTATAGATTGTACAGTCAAGGAAAGCATCTGGT | |||||||||