| mature miRNA: TTAATCTAGGAAAATACGGTG species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27410141|gb|CA923211.1|CA923211 EST640929 MTUS Medicago truncatula cDNA clone MTUS-64F12, mRNA sequence TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): CGTCCTGGGTAGCAAAAGATTCAATAAGTGAGTTGAAAATAGTTTCATGACAACCATTTTCAGGATGGACAATGCCATAGTTTGAATTCACAAAATTTTCAACACCCTAGTTGACAAAATCATATTCTACCACAACCGAGGAAATAATTCTATTAACCTTATTTTCCTAAATTAAAGAAATAAGCTATACGTTCCACACCCTTT | |||||||||
gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): GGCACGAGGCTTCAATCTCTCTCTCTCCCTCTCTCCCTCTCCCTCTCTCTCTCCGATTCGAAATAAATATGCAGATCTCATGCACCTTCTTCCGCTCTGCCTTTCCTTCGCCGGATCTTTGCCGTCACCGGAGCTTCTGCTTCATTGCCATAGCTTCAGCACAATGAGTTATCTTTGTGCTTATCTATCACCGTAATTTCCTTGATTAATTAGGTAATAATGAATGCATTGAATACTGTGAAAAGAGTTGAACAAACTCATACATACATGATCAATACTAACTTAAGTATGCCTACAAAAACACAAATAAAATCTTGGACTTTAATCACTACGATTTATAGCCCCTAACCTCTAACCAAAGTTCAATGGCCATTCAAGTGAATAAAGAGGGTCTTATCCAATTGTCTAAGACTTTCTCCACTAATGTTTAGTTCTTTGAGAGATTCACCTCCAGAATTATCTTCTGAAATCTTAACTCCACCTGAATTTGAATTAAACACGTTTGAGGGGTTTCGATCTTTATAAATTGCATTCATGGGTGGGAGGGTTAAC | |||||||||
gi|209561362|gb|GE345548.1|GE345548 MEUAP48TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): GGTTGGAAGGGAAATCTCCGTATGGTTGGTTCTTTAAGGATCATTGCATGGGCATTGGTGGGGTGGCTTATTGTGTTTTTTTTCTTTTTCTTTTCTTTTTTTTTGGGTTACAACGAGAACATTTCTCTTCGTGTTTGGTAATTACGCCTACAACGACGATGGTTATTGGGACATGTGGGGGATATGACCATGAGGAGTTTCATATTTTTCTTTTGTCATGTGGTTTTTATTCCTTGGGAGCGTGCATTTTTTTACGATATCAATGATTTTGATTTCGGTTTCCGATTTTCTTGGTTTTGGGGTTATTGTTGGGCACCTATACCGCTCAGGTGGTTTCCTATCATGGTTATGTTCACTCGTGTTATTTTTTTCCTATACATTTACCTTTGAAATGGTTTTTTCCTAGATTAAAAAAAA | |||||||||
gi|157982449|gb|EX530721.1|EX530721 MTGland_B009_2007-05-08/MTGlandB009_E11_044_1 Medicago truncatula A17 glandular trichome Med TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): TNACGGCCGGGCAGGCCAGTTTCTAAATTTTAAGTCGACGTGTGATTTGTGCCAATGATATTATGAATTTGGTTGGAGCATAAACCCTGTATCTTGAAGGATATTTTGTTGTCTTAGAAGCTGATATGGAATTAGACGATTGACTTCTAAACGGTGCAAAGCATGCAATCTTTCTTAAAGGGTGTTGACAAATATACAGAAGGATTGTGCAAATGTGCTCAACTTATAATTCTCTTCCTTTCCTTTTTTTCCATTGTTCCCATANAGGATCTCAATCGTCCAAATTCACCGTGCTTTCCTTGATTAAATGAATAATTTAATTTATTATTTATTTAATGCCTTAGTAAATCAGGACATCTCGGAGATATAATCTACAAAAAATTACAGTACACCGACATTTTATCAAAACTCAAGGTAAAACTGCTGTGATGAATGACTCGGGATAATACAAGCATAACAACACATTCCTGCATATAAATAGTTCTAAAAGAGTAAAACTGTAAGTCAGAGTGAAACTACACGTTTCTATAAGTTTATCTAGACCCTCATACCATTTGTAGCCTCCAACCTCAAATGCATTACTGCGAAGTTCCCTTTTGGTAATCTGGTTAAACTTTTCTATCTTCCATGTATATTTCCCATATAACTCAGGAGGTTTTTGTCCTACGAAGAGAAGAANNNNAANANTTTTACAATTTTTTATGGAAAAATATTGGCAATCAACCACCNCCCNTCNTGAAAGGNTCAAGAATCANCTNNAGCTAAAT | |||||||||
gi|27406934|gb|CA920004.1|CA920004 EST637722 MTUS Medicago truncatula cDNA clone MTUS-21E2, mRNA sequence TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): AAACACGTGAAATGCAACATTTTTATACTAATTATAAAATAAACAAGTATTAAATATGTATACGGTTTGGTTCGAGCTAAGGGTTGAGAAGTTAGAGATCATGAATTCGAATCCAAACGAAACATTTAGTAATTACTAACATGTTATTAAAAATAATAGTGACTAACATATGTAATTGAAATAAATACAATAATTGTCACACTAACTGGCCTTGCAGTAAGGCCCGAATCATCAAGGAAGCTGCAGAGTTTTGTGAATCCTTCACTCGAGACTTTTCTTCCCCTAACATTTTGAGTGTACCATCTGGAGTGGCTACCTGAACAGAAGTGACAAATATCTTGTTCTGAGGAGTACCTTCGTCTCTCTCAATGCTGTATACTGGAGTAGGCCATTTTTTCCTCCCACAAAGTGCGTATAACTTCTGCTTGGGTTCTTCAATCTCAAAGGTACCATCTAGGCCTTTACAATTGTCGGGCGTCGTGGTAGTGATAGGGAGTACACGTTCTAGTTTCTGCACAGCACTCTTGGCAGCATCAAGCTTTGCAATGTCCTTCTGATCAGAGGAAGCCACGGCAAACAACTCTCCATCAACATAGACACTGGCAGTGCTTTTGTCACCATTCCTCGAATGTCTTATGTCAACCTTTTTCCCATTCTTATGACAGATCTCATAGAGCATTGTCACCGGTTGCGGCTTTTGTTCAGATCATTCAGTGTTACTATTGGCTCCAAAGACCTCTTATTACCACCATAATTTCCTAGATCAAAATCAGATCACATAAACAGCAGCAGCACAGACTCAACACATCAGCAAGA | |||||||||
gi|157979808|gb|EX528080.1|EX528080 MTGland_A036_2007-05-23/MTGlandA036_H08_025_1 Medicago truncatula A17 glandular trichome Med TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): GACAAAGGATGGAGGATAGAATTAATGATAAAAATTCAAGAGTATAAATATTCTTTCTTTTTTTAAATCAAGAGTATAAATATTCTAACCTATCTATCTATAACATTCTAGAAACAAGATCGTTTAATTTTAGCCACACGTTTGANAAAATGTACAAATTCAACTAACTAATTTATTCATTTACAGCTATCAATCAACTTTANACCGAATACAACAATTTTCCAAATACGGNGATGCTTTATTTTCCTATATTAAATTAATTTTCTTAGCACCAACCGAAATTAAATTAAATTCCAATAATTGCAATGTTACAAAGTTGCGTACAACATCGATTAATGTTTTCCGTAAGATTCATCTGTAACAATAACAGCATCAGCATCCCACCAAGTATTATCCGCGTCAGATTCCGTTACATTTCCTAACGGAAAACTGACTTTTCTCATATCACCAACCGTCAAACGCTGACGTCCGTTATCTCTGACATAAACTTTCTGAACGCCGCCAGATTCCACGCGCAGCGTGTTCCCCACCGTGGGTCCCCACTCGGCTACGACCGACGGCTTCCGTCGTCGGANACGAGTGTCCCATATCTCGACTGCAAGANTACCATGTGCGCCTTCTCCTGCGGAAACAATCNCATCTGGTGATGCNGCCGCA | |||||||||
gi|27406163|gb|CA919233.1|CA919233 EST636951 MTUS Medicago truncatula cDNA clone MTUS-10F12, mRNA sequence TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): GACAAATTCAACTAACTAATTTATTCATTTACAGCTATCAATCAACTTTAGACCGAATACAACAATTTTCCAAATACGGCGATGCTTTATTTTCCTATATTAAATTAATTTTCTTAGCACCAACCGAAATTAAATTAAATTCCAATAATTGCAATGTTACAAAGTTGCGTACAACATCGATTAATGTTTTCCGTAAGATTCATCTGTAACAATAACAGCATCAGCATCCCACCAAGTATTATCCGCGTCAGATTCCGTTACATTTCCTAACGGAAAACTGACTTTTCTCATATCACCAACCGTCAAACGCTGACGTCCGTTATCTCTGACATAAACTTTCTGAACGCCGCCAGATTCCACGCGCAGCGTGTTCCCCACCGTGGGTCCCCACTCGGCTACGACCGACGGCTTCCGTCGTCGGAGACGAGTGTCCCATATCTCGACTGCAAGATTACCATGTGCGCCTTCTCCTGCGGAAACAATCACATCTGGTGATGCAGCCGCAGAAGTTAAAGGCGCATGTGGGTTGGTAGAAGAAATAACACCATCCTCGTATTCATCGAAATCTAAACCTAAACCAAATCCTATACTGTCCCAAAGCTTAACAACGTTATCACCATTGGCTAATTCTAAAAGAG | |||||||||
gi|20274358|gb|BQ138232.1|BQ138232 NF001B02PH1F1015 Phoma-infected Medicago truncatula cDNA clone NF001B02PH 5', mRNA sequence TTAATCTAGGAAAATACGGTG EST sequence (targeted fragment marked with yellow): CTAACATTTTCAGATCAATCTCTCCCAGCTTCTAGACTAGACTAGGATACGCATTAAACTCCTCTCATCATCATCATCATCCATGATGGAGCTCCTGCTACAATCTTTATTGCCAAAGTTCCAACTAAGTTTCAGTATAATGACTTACTTTTGTGTTCAACCGTGATTTCCTTGATTAATTAGAGATGAAGAAAGAGTCTCTCATGAGGTCTGAGACAAGAAAAGAGAAAAAAAGAGTTGACTGAAGCATATGTGCCTGGATTCGGAATGTGTACCATTGCTACTTGGTTGTGCTAAGCCACCACCTCATTTCGATGGAAGGGATGTACATACGAGCACTTCAAGCGAAACTGAAGTAGATGTTGATCAGGACCGATGACTTAGGAGGTAGAATGTTGATAAGGGCAATCTAAGTTGAATTGAGGCGGCCTTGGCACTTGCTAGAAAGAATGCATTCACAAGGACATTCATGGTTCGGTCAATTTCACCCAAGAAGAAAGTCGTTGAATGCTTTAAAATNCTTCATGG | |||||||||